ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbart60d01 |
|---|---|
| Clone Library Name | barley_pub |
>PABP2_ARATH (P42731) Polyadenylate-binding protein 2 (Poly(A)-binding protein| 2) (PABP 2) Length = 629 Score = 76.3 bits (186), Expect = 2e-14 Identities = 43/58 (74%), Positives = 48/58 (82%) Frame = -2 Query: 340 AAKVTGMLLEMDQTEVLHLLESPDALKAKVAEAMEVLRSAQQHTNQSPEQQLASLSLN 167 AAKVTGMLLEMDQTEVLHLLESP+ALKAKVAEAM+VLRS +QLASL+L+ Sbjct: 575 AAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAMDVLRSV---AAGGATEQLASLNLS 629
>PABP5_ARATH (Q05196) Polyadenylate-binding protein 5 (Poly(A)-binding protein| 5) (PABP 5) Length = 668 Score = 67.8 bits (164), Expect = 6e-12 Identities = 37/54 (68%), Positives = 43/54 (79%), Gaps = 1/54 (1%) Frame = -2 Query: 340 AAKVTGMLLEMDQTEVLHLLESPDALKAKVAEAMEVL-RSAQQHTNQSPEQQLA 182 AAKVTGMLLEMDQ E+LHLLESP+ALKAKV+EA++VL RSA S + Q A Sbjct: 610 AAKVTGMLLEMDQAEILHLLESPEALKAKVSEALDVLRRSADPAAVSSVDDQFA 663
>PABP3_ARATH (O64380) Polyadenylate-binding protein 3 (Poly(A)-binding protein| 3) (PABP 3) Length = 660 Score = 63.5 bits (153), Expect = 1e-10 Identities = 30/44 (68%), Positives = 39/44 (88%) Frame = -2 Query: 337 AKVTGMLLEMDQTEVLHLLESPDALKAKVAEAMEVLRSAQQHTN 206 AKVTGMLLEMDQ E+LHL+ESP+ALK+KV+EA++VLR + T+ Sbjct: 608 AKVTGMLLEMDQAEILHLMESPEALKSKVSEALDVLRLSVDPTD 651
>EPAB_XENTR (Q6DEY7) Embryonic polyadenylate-binding protein (Embryonic poly(A)| binding protein) (ePABP) Length = 629 Score = 56.2 bits (134), Expect = 2e-08 Identities = 27/54 (50%), Positives = 44/54 (81%), Gaps = 2/54 (3%) Frame = -2 Query: 340 AAKVTGMLLEMDQTEVLHLLESPDALKAKVAEAMEVLRS--AQQHTNQSPEQQL 185 A K+TGMLLE+D +E+LH+LESP++L +KV EA+ VL++ A++++ +S +Q L Sbjct: 575 AGKITGMLLEIDNSELLHMLESPESLHSKVEEAVAVLQAHQAKENSQKSAQQSL 628
>EPABA_XENLA (Q98SP8) Embryonic polyadenylate-binding protein-A (Embryonic| poly(A) binding protein-A) (ePABP-A) (ePAB-A) (XePABP-A) Length = 629 Score = 55.1 bits (131), Expect = 4e-08 Identities = 26/51 (50%), Positives = 37/51 (72%) Frame = -2 Query: 340 AAKVTGMLLEMDQTEVLHLLESPDALKAKVAEAMEVLRSAQQHTNQSPEQQ 188 A K+TGMLLE+D +E+LH+LESP++L +KV EA+ VL++ Q N Q Sbjct: 575 AGKITGMLLEIDNSELLHMLESPESLHSKVEEAVAVLQAHQAKENAQKSAQ 625
>PABP4_HUMAN (Q13310) Polyadenylate-binding protein 4 (Poly(A)-binding protein| 4) (PABP 4) (Inducible poly(A)-binding protein) (iPABP) (Activated-platelet protein 1) (APP-1) Length = 644 Score = 54.3 bits (129), Expect = 7e-08 Identities = 25/56 (44%), Positives = 43/56 (76%) Frame = -2 Query: 340 AAKVTGMLLEMDQTEVLHLLESPDALKAKVAEAMEVLRSAQQHTNQSPEQQLASLS 173 A K+TGMLLE+D +E+LH+LESP++L++KV EA+ VL++ H + Q++ +++ Sbjct: 587 AGKITGMLLEIDNSELLHMLESPESLRSKVDEAVAVLQA--HHAKKEAAQKVGAVA 640
>EPABB_XENLA (Q6GR16) Embryonic polyadenylate-binding protein-B (Embryonic| poly(A) binding protein-B) (ePABP-B) (ePAB-B) (XePABP-B) Length = 629 Score = 53.9 bits (128), Expect = 1e-07 Identities = 28/55 (50%), Positives = 40/55 (72%) Frame = -2 Query: 340 AAKVTGMLLEMDQTEVLHLLESPDALKAKVAEAMEVLRSAQQHTNQSPEQQLASL 176 A K+TGMLLE+D +E+LH+LESP++L +KV EA+ VL+ A Q +P+ SL Sbjct: 575 AGKITGMLLEIDNSELLHMLESPESLHSKVEEAVAVLQ-AHQAKESAPKSAPQSL 628
>PABP1_RAT (Q9EPH8) Polyadenylate-binding protein 1 (Poly(A)-binding protein| 1) (PABP 1) Length = 636 Score = 53.9 bits (128), Expect = 1e-07 Identities = 24/41 (58%), Positives = 36/41 (87%) Frame = -2 Query: 340 AAKVTGMLLEMDQTEVLHLLESPDALKAKVAEAMEVLRSAQ 218 A K+TGMLLE+D +E+LH+LESP++L++KV EA+ VL++ Q Sbjct: 578 AGKITGMLLEIDNSELLHMLESPESLRSKVDEAVAVLQAHQ 618
>PABP1_MOUSE (P29341) Polyadenylate-binding protein 1 (Poly(A)-binding protein| 1) (PABP 1) Length = 636 Score = 53.9 bits (128), Expect = 1e-07 Identities = 24/41 (58%), Positives = 36/41 (87%) Frame = -2 Query: 340 AAKVTGMLLEMDQTEVLHLLESPDALKAKVAEAMEVLRSAQ 218 A K+TGMLLE+D +E+LH+LESP++L++KV EA+ VL++ Q Sbjct: 578 AGKITGMLLEIDNSELLHMLESPESLRSKVDEAVAVLQAHQ 618
>PABP1_HUMAN (P11940) Polyadenylate-binding protein 1 (Poly(A)-binding protein| 1) (PABP 1) Length = 636 Score = 53.9 bits (128), Expect = 1e-07 Identities = 24/41 (58%), Positives = 36/41 (87%) Frame = -2 Query: 340 AAKVTGMLLEMDQTEVLHLLESPDALKAKVAEAMEVLRSAQ 218 A K+TGMLLE+D +E+LH+LESP++L++KV EA+ VL++ Q Sbjct: 578 AGKITGMLLEIDNSELLHMLESPESLRSKVDEAVAVLQAHQ 618
>PABP1_BOVIN (P61286) Polyadenylate-binding protein 1 (Poly(A)-binding protein| 1) (PABP 1) Length = 636 Score = 53.9 bits (128), Expect = 1e-07 Identities = 24/41 (58%), Positives = 36/41 (87%) Frame = -2 Query: 340 AAKVTGMLLEMDQTEVLHLLESPDALKAKVAEAMEVLRSAQ 218 A K+TGMLLE+D +E+LH+LESP++L++KV EA+ VL++ Q Sbjct: 578 AGKITGMLLEIDNSELLHMLESPESLRSKVDEAVAVLQAHQ 618
>PABPB_XENLA (Q6IP09) Polyadenylate-binding protein 1-B (Poly(A)-binding protein| 1-B) (Cytoplasmic poly(A)-binding protein 1-B) (PABP-B) (PABP 1-B) (xPABP1-B) Length = 633 Score = 53.9 bits (128), Expect = 1e-07 Identities = 24/41 (58%), Positives = 36/41 (87%) Frame = -2 Query: 340 AAKVTGMLLEMDQTEVLHLLESPDALKAKVAEAMEVLRSAQ 218 A K+TGMLLE+D +E+LH+LESP++L++KV EA+ VL++ Q Sbjct: 576 AGKITGMLLEIDNSELLHMLESPESLRSKVDEAVAVLQAHQ 616
>PABPA_XENLA (P20965) Polyadenylate-binding protein 1-A (Poly(A)-binding protein| 1-A) (Cytoplasmic poly(A)-binding protein 1-A) (PABP-A) (PABP 1-A) (xPABP1-A) Length = 633 Score = 53.9 bits (128), Expect = 1e-07 Identities = 24/41 (58%), Positives = 36/41 (87%) Frame = -2 Query: 340 AAKVTGMLLEMDQTEVLHLLESPDALKAKVAEAMEVLRSAQ 218 A K+TGMLLE+D +E+LH+LESP++L++KV EA+ VL++ Q Sbjct: 576 AGKITGMLLEIDNSELLHMLESPESLRSKVDEAVAVLQAHQ 616
>PABP3_HUMAN (Q9H361) Polyadenylate-binding protein 3 (Poly(A)-binding protein| 3) (PABP 3) (Testis-specific poly(A)-binding protein) Length = 631 Score = 51.6 bits (122), Expect = 5e-07 Identities = 23/41 (56%), Positives = 36/41 (87%) Frame = -2 Query: 340 AAKVTGMLLEMDQTEVLHLLESPDALKAKVAEAMEVLRSAQ 218 A K+TGMLLE+D +E+L++LESP++L++KV EA+ VL++ Q Sbjct: 573 AGKITGMLLEIDNSELLYMLESPESLRSKVDEAVAVLQAHQ 613
>PABP_DROME (P21187) Polyadenylate-binding protein (Poly(A)-binding protein)| (PABP) Length = 634 Score = 49.3 bits (116), Expect = 2e-06 Identities = 22/38 (57%), Positives = 32/38 (84%) Frame = -2 Query: 340 AAKVTGMLLEMDQTEVLHLLESPDALKAKVAEAMEVLR 227 A K+TGMLLE++ +E+LH++E +ALKAKV EA+ VL+ Sbjct: 588 AGKITGMLLEIENSELLHMIEDQEALKAKVEEAVAVLQ 625
>PABPX_ARATH (Q9ZQA8) Probable polyadenylate-binding protein At2g36660| (Poly(A)-binding protein At2g36660) (PABP) Length = 609 Score = 49.3 bits (116), Expect = 2e-06 Identities = 24/41 (58%), Positives = 34/41 (82%) Frame = -2 Query: 340 AAKVTGMLLEMDQTEVLHLLESPDALKAKVAEAMEVLRSAQ 218 A K+TGMLLEMD++E+L LL+SP+ L +V EA EVL+S++ Sbjct: 545 ANKITGMLLEMDKSELLLLLKSPEDLAVRVDEAFEVLKSSK 585
>EDD1_RAT (Q62671) Ubiquitin-protein ligase EDD1 (EC 6.3.2.-) (Hyperplastic| discs protein homolog) (100 kDa protein) (Fragment) Length = 920 Score = 44.3 bits (103), Expect = 8e-05 Identities = 24/59 (40%), Positives = 38/59 (64%) Frame = -2 Query: 340 AAKVTGMLLEMDQTEVLHLLESPDALKAKVAEAMEVLRSAQQHTNQSPEQQLASLSLND 164 A+K+TGMLLE+ ++L LL S D+L+A+V EAME++ + H ++ + L L D Sbjct: 535 ASKITGMLLELSPAQLLLLLASEDSLRARVEEAMELIVA---HGRENGADSILDLGLLD 590
>EDD1_HUMAN (O95071) Ubiquitin-protein ligase EDD1 (EC 6.3.2.-) (Hyperplastic| discs protein homolog) (hHYD) (Progestin-induced protein) Length = 2799 Score = 43.9 bits (102), Expect = 1e-04 Identities = 24/59 (40%), Positives = 38/59 (64%) Frame = -2 Query: 340 AAKVTGMLLEMDQTEVLHLLESPDALKAKVAEAMEVLRSAQQHTNQSPEQQLASLSLND 164 A+K+TGMLLE+ ++L LL S D+L+A+V EAME++ + H ++ + L L D Sbjct: 2413 ASKITGMLLELSPAQLLLLLASEDSLRARVDEAMELIIA---HGRENGADSILDLGLVD 2468
>EDD1_MOUSE (Q80TP3) Ubiquitin-protein ligase EDD1 (EC 6.3.2.-) (Hyperplastic| discs protein homolog) Length = 2792 Score = 43.9 bits (102), Expect = 1e-04 Identities = 24/59 (40%), Positives = 38/59 (64%) Frame = -2 Query: 340 AAKVTGMLLEMDQTEVLHLLESPDALKAKVAEAMEVLRSAQQHTNQSPEQQLASLSLND 164 A+K+TGMLLE+ ++L LL S D+L+A+V EAME++ + H ++ + L L D Sbjct: 2407 ASKITGMLLELSPAQLLLLLASEDSLRARVDEAMELIIA---HGRENGADSILDLGLLD 2462
>PABP_SCHPO (P31209) Polyadenylate-binding protein (Poly(A)-binding protein)| (PABP) Length = 653 Score = 42.0 bits (97), Expect = 4e-04 Identities = 23/48 (47%), Positives = 31/48 (64%) Frame = -2 Query: 340 AAKVTGMLLEMDQTEVLHLLESPDALKAKVAEAMEVLRSAQQHTNQSP 197 + K+TGMLLEM +E+L LLE AL +V EA+ VL Q+ +Q P Sbjct: 605 SGKITGMLLEMPNSELLELLEDDSALNERVNEAIGVL---QEFVDQEP 649
>HYD_DROME (P51592) Ubiquitin--protein ligase hyd (EC 6.3.2.-) (Protein| hyperplastic discs) Length = 2885 Score = 38.9 bits (89), Expect = 0.003 Identities = 18/51 (35%), Positives = 31/51 (60%) Frame = -2 Query: 340 AAKVTGMLLEMDQTEVLHLLESPDALKAKVAEAMEVLRSAQQHTNQSPEQQ 188 A K+TGMLLE+ ++L ++ S + L+ KV EA+E++ Q+ + Q Sbjct: 2520 APKITGMLLEIPTPQLLSVISSDETLRQKVNEAIEIITFKQKSETSAQSSQ 2570
>PABP_YEAST (P04147) Polyadenylate-binding protein, cytoplasmic and nuclear| (Poly(A)-binding protein) (PABP) (ARS consensus-binding protein ACBP-67) (Polyadenylate tail-binding protein) Length = 576 Score = 35.0 bits (79), Expect = 0.046 Identities = 18/50 (36%), Positives = 26/50 (52%) Frame = -2 Query: 340 AAKVTGMLLEMDQTEVLHLLESPDALKAKVAEAMEVLRSAQQHTNQSPEQ 191 A K+TGM+L++ EV LLES + + EA S ++ Q EQ Sbjct: 526 AGKITGMILDLPPQEVFPLLESDELFEQHYKEASAAYESFKKEQEQQTEQ 575
>FLHF_TREPA (Q56339) Flagellar biosynthesis protein flhF (Flagella-associated| GTP-binding protein) Length = 437 Score = 32.0 bits (71), Expect = 0.39 Identities = 26/97 (26%), Positives = 45/97 (46%), Gaps = 13/97 (13%) Frame = -2 Query: 334 KVTGMLLEMDQTEVLHLLESPDALKAKVAEAMEVLRSAQQHTN-----QSPEQQLASLSL 170 +V+ +E + E + +LES + AK+A+ +E L SA + SPE A Sbjct: 73 RVSAARVEDTEAEKIKILESAQRINAKIAQQVEPLISAAKEKKTEKVPTSPEAVHALTQT 132 Query: 169 NDGLISS--------*AKQRQFLHHIKLI*TENDLVY 83 +G+I A++ Q + I+L+ END + Sbjct: 133 LEGMIQKITNSAPVVIAQELQSIQRIELLLEENDFSF 169
>ZDS1_YEAST (P50111) Protein ZDS1 (Protein NRC1) (RT2GS1)| Length = 915 Score = 28.9 bits (63), Expect = 3.3 Identities = 13/25 (52%), Positives = 17/25 (68%) Frame = +2 Query: 230 ENLHGFSNLGLESVWRLKQVKHLGL 304 ENLHG N G+ES + KQ +LG+ Sbjct: 106 ENLHGRGNSGIESSNKTKQGNYLGI 130
>LAMA4_MOUSE (P97927) Laminin alpha-4 chain precursor| Length = 1816 Score = 28.9 bits (63), Expect = 3.3 Identities = 19/82 (23%), Positives = 37/82 (45%), Gaps = 4/82 (4%) Frame = -2 Query: 325 GMLLEMDQTEVL----HLLESPDALKAKVAEAMEVLRSAQQHTNQSPEQQLASLSLNDGL 158 GML+E + + + HL+E ++ K+ E + ++ PE+ L L + Sbjct: 360 GMLVEKESMDTIDQATHLVEQAHNMRDKIQEINSKMLYYGENQELGPEEIAEKLVLAQKM 419 Query: 157 ISS*AKQRQFLHHIKLI*TEND 92 + ++ FL H +L+ E D Sbjct: 420 LEEIRSRQPFLTHRELVDEEAD 441
>MUKB_VIBVY (Q7MJ64) Chromosome partition protein mukB (Structural maintenance| of chromosome-related protein) Length = 1487 Score = 28.5 bits (62), Expect = 4.3 Identities = 27/77 (35%), Positives = 39/77 (50%), Gaps = 7/77 (9%) Frame = -2 Query: 316 LEMDQTEVLHLLESPDAL-KAKV--AEAMEVLRSAQ----QHTNQSPEQQLASLSLNDGL 158 L++ QT L ++ AL KAKV +++ SAQ Q T EQ A L+L L Sbjct: 406 LDVQQTRALQYQQAVQALEKAKVLLSDSTLTAESAQALVAQLTQSEAEQTQALLALKHKL 465 Query: 157 ISS*AKQRQFLHHIKLI 107 S A +QF + +KL+ Sbjct: 466 DMSSAAAQQFENALKLV 482
>MUKB_VIBVU (Q8DAP8) Chromosome partition protein mukB (Structural maintenance| of chromosome-related protein) Length = 1487 Score = 28.5 bits (62), Expect = 4.3 Identities = 27/77 (35%), Positives = 39/77 (50%), Gaps = 7/77 (9%) Frame = -2 Query: 316 LEMDQTEVLHLLESPDAL-KAKV--AEAMEVLRSAQ----QHTNQSPEQQLASLSLNDGL 158 L++ QT L ++ AL KAKV +++ SAQ Q T EQ A L+L L Sbjct: 406 LDVQQTRALQYQQAVQALEKAKVLLSDSTLTAESAQALVAQLTQSEAEQTQALLALKHKL 465 Query: 157 ISS*AKQRQFLHHIKLI 107 S A +QF + +KL+ Sbjct: 466 DMSSAAAQQFENALKLV 482
>IF36_SCHPO (O94513) Eukaryotic translation initiation factor 3 subunit 6| (eIF-3 p48) Length = 501 Score = 28.1 bits (61), Expect = 5.6 Identities = 14/42 (33%), Positives = 25/42 (59%) Frame = -2 Query: 316 LEMDQTEVLHLLESPDALKAKVAEAMEVLRSAQQHTNQSPEQ 191 LE + +L +LE+PD + A + + L+ Q+H N +PE+ Sbjct: 99 LEEEVQGILGVLENPDLIAALRQDKGQNLQHLQEHYNITPER 140
>ETF1_SFVKA (P32096) Early transcription factor 70 kDa subunit (EC 3.6.1.-)| (ATP-dependent helicase VETFS) (VETF small subunit) Length = 635 Score = 28.1 bits (61), Expect = 5.6 Identities = 16/45 (35%), Positives = 24/45 (53%), Gaps = 3/45 (6%) Frame = +2 Query: 23 KPIHGKPKRLVQLLAKAKSQINQVIFSLNKF---DMVQKLSLFSS 148 K IHGKPK + +K K+ + ++ + N D Q + LFSS Sbjct: 376 KLIHGKPKTFAIVTSKMKASLEDLLVTYNSLANDDGSQIMFLFSS 420
>MDH_THEFY (Q47TT4) Malate dehydrogenase (EC 1.1.1.37)| Length = 330 Score = 28.1 bits (61), Expect = 5.6 Identities = 15/32 (46%), Positives = 19/32 (59%) Frame = -2 Query: 328 TGMLLEMDQTEVLHLLESPDALKAKVAEAMEV 233 +G LL +D L LLE P A+KA AME+ Sbjct: 27 SGQLLGVDTPVRLRLLEIPQAIKAAEGTAMEL 58
>SYM_AZOSE (Q5P239) Methionyl-tRNA synthetase (EC 6.1.1.10) (Methionine--tRNA| ligase) (MetRS) Length = 718 Score = 27.7 bits (60), Expect = 7.3 Identities = 17/59 (28%), Positives = 31/59 (52%), Gaps = 6/59 (10%) Frame = -2 Query: 322 MLLEMDQTEVLHLLES------PDALKAKVAEAMEVLRSAQQHTNQSPEQQLASLSLND 164 ++ +++ ++ LLE+ P A AKVA + + QQH QS E + +S++D Sbjct: 550 LMTRVERKQIDALLEANRESLAPAAPAAKVASSQQRHAEKQQHEAQSAETAMPHISIDD 608
>FA62A_PONPY (Q5RAG2) Protein FAM62A| Length = 1104 Score = 27.7 bits (60), Expect = 7.3 Identities = 9/19 (47%), Positives = 11/19 (57%) Frame = -1 Query: 344 PGCQGYWHASGDGPDRGAS 288 PGC G W + P RG+S Sbjct: 609 PGCPGAWDVDSENPQRGSS 627
>FA62A_HUMAN (Q9BSJ8) Protein FAM62A (Membrane bound C2 domain-containing| protein) Length = 1104 Score = 27.7 bits (60), Expect = 7.3 Identities = 9/19 (47%), Positives = 11/19 (57%) Frame = -1 Query: 344 PGCQGYWHASGDGPDRGAS 288 PGC G W + P RG+S Sbjct: 609 PGCPGAWDVDSENPQRGSS 627
>PYRC_THEAQ (P96081) Dihydroorotase (EC 3.5.2.3) (DHOase)| Length = 426 Score = 27.3 bits (59), Expect = 9.6 Identities = 14/39 (35%), Positives = 22/39 (56%) Frame = -2 Query: 274 PDALKAKVAEAMEVLRSAQQHTNQSPEQQLASLSLNDGL 158 P+A A++A +EVLR A + + +P + LS GL Sbjct: 202 PEAEAARIARDLEVLRYALRRSPATPRLHVQHLSTKRGL 240
>CYLN2_RAT (O55156) Cytoplasmic linker protein 2 (Cytoplasmic linker protein| 115) (CLIP-115) Length = 1046 Score = 27.3 bits (59), Expect = 9.6 Identities = 17/52 (32%), Positives = 25/52 (48%), Gaps = 6/52 (11%) Frame = -2 Query: 316 LEMDQTEVLHLLESP------DALKAKVAEAMEVLRSAQQHTNQSPEQQLAS 179 LE+ + H LE+ + L+ K+ EA E L QQH E+Q A+ Sbjct: 663 LELGNLQAKHDLETAMHGKEKEGLRQKLQEAQEELAGLQQHWRAQLEEQAAA 714 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 43,370,882 Number of Sequences: 219361 Number of extensions: 661253 Number of successful extensions: 1930 Number of sequences better than 10.0: 35 Number of HSP's better than 10.0 without gapping: 1897 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 1929 length of database: 80,573,946 effective HSP length: 90 effective length of database: 60,831,456 effective search space used: 1459954944 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
