Clone Name | rbart60c12 |
---|---|
Clone Library Name | barley_pub |
>ref|XM_968674.1| PREDICTED: Tribolium castaneum similar to CG18076-PH, isoform H (LOC662585), mRNA Length = 25527 Score = 44.1 bits (22), Expect = 0.081 Identities = 22/22 (100%) Strand = Plus / Plus Query: 66 ttaaggaagcaaccaaaaaagg 87 |||||||||||||||||||||| Sbjct: 9131 ttaaggaagcaaccaaaaaagg 9152
>emb|AL139035.27| Human DNA sequence from clone RP11-214F16 on chromosome 13 Contains the TM9SF2 gene for transmembrane 9 superfamily member 2 (P76), three novel genes, a cofilin 1 (non-muscle) (CFL1) pseudogene, the 5' end of the CLYBL gene for citrate lyase beta like (CLB bA134O15.1) and two CpG islands, complete sequence Length = 157662 Score = 40.1 bits (20), Expect = 1.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 80 aaaaaaggaaatcaattaat 99 |||||||||||||||||||| Sbjct: 59070 aaaaaaggaaatcaattaat 59051
>gb|AC073088.5| Homo sapiens BAC clone RP11-323P8 from 2, complete sequence Length = 55713 Score = 40.1 bits (20), Expect = 1.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 71 gaagcaaccaaaaaaggaaa 90 |||||||||||||||||||| Sbjct: 39570 gaagcaaccaaaaaaggaaa 39551
>emb|BX510362.9| Mouse DNA sequence from clone RP23-371L4 on chromosome 2, complete sequence Length = 98800 Score = 40.1 bits (20), Expect = 1.3 Identities = 30/32 (93%), Gaps = 1/32 (3%) Strand = Plus / Minus Query: 79 caaaaaaggaaatcaattaatccacagctccc 110 |||||||||||||||||| | ||||||||||| Sbjct: 55251 caaaaaaggaaatcaattca-ccacagctccc 55221
>emb|AL713977.13| Mouse DNA sequence from clone RP23-303A21 on chromosome X, complete sequence Length = 159014 Score = 40.1 bits (20), Expect = 1.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 75 caaccaaaaaaggaaatcaa 94 |||||||||||||||||||| Sbjct: 97814 caaccaaaaaaggaaatcaa 97833
>ref|XM_634193.1| Dictyostelium discoideum hypothetical protein (DDB0218427), partial mRNA Length = 1032 Score = 38.2 bits (19), Expect = 5.0 Identities = 19/19 (100%) Strand = Plus / Minus Query: 62 ttaattaaggaagcaacca 80 ||||||||||||||||||| Sbjct: 788 ttaattaaggaagcaacca 770
>gb|AC132833.10| Mus musculus chromosome 15, clone RP24-498G7, complete sequence Length = 154206 Score = 38.2 bits (19), Expect = 5.0 Identities = 19/19 (100%) Strand = Plus / Plus Query: 83 aaaggaaatcaattaatcc 101 ||||||||||||||||||| Sbjct: 31740 aaaggaaatcaattaatcc 31758
>gb|CP000098.1| Methanosarcina barkeri str. fusaro plasmid 1, complete sequence Length = 36358 Score = 38.2 bits (19), Expect = 5.0 Identities = 19/19 (100%) Strand = Plus / Minus Query: 54 tctacttattaattaagga 72 ||||||||||||||||||| Sbjct: 2027 tctacttattaattaagga 2009
>gb|AC158565.2| Mus musculus chromosome 15, clone RP24-354O12, complete sequence Length = 150125 Score = 38.2 bits (19), Expect = 5.0 Identities = 19/19 (100%) Strand = Plus / Minus Query: 83 aaaggaaatcaattaatcc 101 ||||||||||||||||||| Sbjct: 28534 aaaggaaatcaattaatcc 28516
>emb|BX957219.1| Methanococcus maripaludis S2 complete genome; segment 1/5 Length = 345730 Score = 38.2 bits (19), Expect = 5.0 Identities = 22/23 (95%) Strand = Plus / Minus Query: 63 taattaaggaagcaaccaaaaaa 85 |||||||||||| |||||||||| Sbjct: 166525 taattaaggaagaaaccaaaaaa 166503
>emb|AL591174.13| Mouse DNA sequence from clone RP23-271B20 on chromosome 11, complete sequence Length = 205379 Score = 38.2 bits (19), Expect = 5.0 Identities = 25/27 (92%) Strand = Plus / Minus Query: 69 aggaagcaaccaaaaaaggaaatcaat 95 |||||| ||||| |||||||||||||| Sbjct: 179728 aggaagaaaccagaaaaggaaatcaat 179702
>emb|BX465841.9| Zebrafish DNA sequence from clone CH211-198K5 in linkage group 21, complete sequence Length = 83186 Score = 38.2 bits (19), Expect = 5.0 Identities = 19/19 (100%) Strand = Plus / Minus Query: 79 caaaaaaggaaatcaatta 97 ||||||||||||||||||| Sbjct: 3290 caaaaaaggaaatcaatta 3272
>gb|AC108110.3| Homo sapiens chromosome 5 clone RP11-265O6, complete sequence Length = 136730 Score = 38.2 bits (19), Expect = 5.0 Identities = 22/23 (95%) Strand = Plus / Minus Query: 79 caaaaaaggaaatcaattaatcc 101 ||||||||||||||||| ||||| Sbjct: 66754 caaaaaaggaaatcaatgaatcc 66732
>gb|AC104980.5| Homo sapiens chromosome 8, clone RP11-281D17, complete sequence Length = 187226 Score = 38.2 bits (19), Expect = 5.0 Identities = 22/23 (95%) Strand = Plus / Plus Query: 47 atcaagttctacttattaattaa 69 ||||||||||||||| ||||||| Sbjct: 21975 atcaagttctacttaataattaa 21997
>gb|AC105193.4| Homo sapiens chromosome 8, clone RP11-379M16, complete sequence Length = 171256 Score = 38.2 bits (19), Expect = 5.0 Identities = 22/23 (95%) Strand = Plus / Plus Query: 47 atcaagttctacttattaattaa 69 ||||||||||||||| ||||||| Sbjct: 139111 atcaagttctacttaataattaa 139133
>dbj|AK041955.1| Mus musculus 3 days neonate thymus cDNA, RIKEN full-length enriched library, clone:A630048L09 product:unclassifiable, full insert sequence Length = 3975 Score = 38.2 bits (19), Expect = 5.0 Identities = 25/27 (92%) Strand = Plus / Plus Query: 69 aggaagcaaccaaaaaaggaaatcaat 95 |||||| ||||| |||||||||||||| Sbjct: 3814 aggaagaaaccagaaaaggaaatcaat 3840
>dbj|AK041558.1| Mus musculus 3 days neonate thymus cDNA, RIKEN full-length enriched library, clone:A630020N13 product:unclassifiable, full insert sequence Length = 3976 Score = 38.2 bits (19), Expect = 5.0 Identities = 25/27 (92%) Strand = Plus / Plus Query: 69 aggaagcaaccaaaaaaggaaatcaat 95 |||||| ||||| |||||||||||||| Sbjct: 3815 aggaagaaaccagaaaaggaaatcaat 3841
>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete sequence Length = 27566993 Score = 38.2 bits (19), Expect = 5.0 Identities = 19/19 (100%) Strand = Plus / Plus Query: 43 atccatcaagttctactta 61 ||||||||||||||||||| Sbjct: 14433502 atccatcaagttctactta 14433520
>gb|AC026316.16| Homo sapiens 3 BAC RP11-373E16 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 164409 Score = 38.2 bits (19), Expect = 5.0 Identities = 19/19 (100%) Strand = Plus / Plus Query: 64 aattaaggaagcaaccaaa 82 ||||||||||||||||||| Sbjct: 36364 aattaaggaagcaaccaaa 36382
>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence Length = 27492551 Score = 38.2 bits (19), Expect = 5.0 Identities = 19/19 (100%) Strand = Plus / Plus Query: 43 atccatcaagttctactta 61 ||||||||||||||||||| Sbjct: 14387786 atccatcaagttctactta 14387804
>emb|AL731753.2|CNS08C82 Oryza sativa chromosome 12, . BAC OJ1112_B07 of library Monsanto from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 118101 Score = 38.2 bits (19), Expect = 5.0 Identities = 19/19 (100%) Strand = Plus / Minus Query: 43 atccatcaagttctactta 61 ||||||||||||||||||| Sbjct: 83790 atccatcaagttctactta 83772
>dbj|AP004289.2| Homo sapiens genomic DNA, chromosome 8q23, clone: KB1844F2 Length = 151991 Score = 38.2 bits (19), Expect = 5.0 Identities = 22/23 (95%) Strand = Plus / Minus Query: 47 atcaagttctacttattaattaa 69 ||||||||||||||| ||||||| Sbjct: 48564 atcaagttctacttaataattaa 48542 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 1,391,346 Number of Sequences: 3902068 Number of extensions: 1391346 Number of successful extensions: 97755 Number of sequences better than 10.0: 22 Number of HSP's better than 10.0 without gapping: 21 Number of HSP's successfully gapped in prelim test: 1 Number of HSP's that attempted gapping in prelim test: 97607 Number of HSP's gapped (non-prelim): 149 length of query: 110 length of database: 17,233,045,268 effective HSP length: 21 effective length of query: 89 effective length of database: 17,151,101,840 effective search space: 1526448063760 effective search space used: 1526448063760 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 19 (38.2 bits)