ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbart60c12
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1ref|XM_968674.1| PREDICTED: Tribolium castaneum similar to CG180... 44 0.081
2emb|AL139035.27| Human DNA sequence from clone RP11-214F16 on ch... 40 1.3
3gb|AC073088.5| Homo sapiens BAC clone RP11-323P8 from 2, complet... 40 1.3
4emb|BX510362.9| Mouse DNA sequence from clone RP23-371L4 on chro... 40 1.3
5emb|AL713977.13| Mouse DNA sequence from clone RP23-303A21 on ch... 40 1.3
6ref|XM_634193.1| Dictyostelium discoideum hypothetical protein (... 38 5.0
7gb|AC132833.10| Mus musculus chromosome 15, clone RP24-498G7, co... 38 5.0
8gb|CP000098.1| Methanosarcina barkeri str. fusaro plasmid 1, com... 38 5.0
9gb|AC158565.2| Mus musculus chromosome 15, clone RP24-354O12, co... 38 5.0
10emb|BX957219.1| Methanococcus maripaludis S2 complete genome; se... 38 5.0
11emb|AL591174.13| Mouse DNA sequence from clone RP23-271B20 on ch... 38 5.0
12emb|BX465841.9| Zebrafish DNA sequence from clone CH211-198K5 in... 38 5.0
13gb|AC108110.3| Homo sapiens chromosome 5 clone RP11-265O6, compl... 38 5.0
14gb|AC104980.5| Homo sapiens chromosome 8, clone RP11-281D17, com... 38 5.0
15gb|AC105193.4| Homo sapiens chromosome 8, clone RP11-379M16, com... 38 5.0
16dbj|AK041955.1| Mus musculus 3 days neonate thymus cDNA, RIKEN f... 38 5.0
17dbj|AK041558.1| Mus musculus 3 days neonate thymus cDNA, RIKEN f... 38 5.0
18dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic D... 38 5.0
19gb|AC026316.16| Homo sapiens 3 BAC RP11-373E16 (Roswell Park Can... 38 5.0
20gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome... 38 5.0
21emb|AL731753.2|CNS08C82 Oryza sativa chromosome 12, . BAC OJ1112... 38 5.0
22dbj|AP004289.2| Homo sapiens genomic DNA, chromosome 8q23, clone... 38 5.0

>ref|XM_968674.1| PREDICTED: Tribolium castaneum similar to CG18076-PH, isoform H
            (LOC662585), mRNA
          Length = 25527

 Score = 44.1 bits (22), Expect = 0.081
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                  
Query: 66   ttaaggaagcaaccaaaaaagg 87
            ||||||||||||||||||||||
Sbjct: 9131 ttaaggaagcaaccaaaaaagg 9152



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>emb|AL139035.27| Human DNA sequence from clone RP11-214F16 on chromosome 13 Contains the
             TM9SF2 gene for transmembrane 9 superfamily member 2
             (P76), three novel genes, a cofilin 1 (non-muscle) (CFL1)
             pseudogene, the 5' end of the CLYBL gene for citrate lyase
             beta like (CLB bA134O15.1) and two CpG islands, complete
             sequence
          Length = 157662

 Score = 40.1 bits (20), Expect = 1.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 80    aaaaaaggaaatcaattaat 99
             ||||||||||||||||||||
Sbjct: 59070 aaaaaaggaaatcaattaat 59051



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>gb|AC073088.5| Homo sapiens BAC clone RP11-323P8 from 2, complete sequence
          Length = 55713

 Score = 40.1 bits (20), Expect = 1.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 71    gaagcaaccaaaaaaggaaa 90
             ||||||||||||||||||||
Sbjct: 39570 gaagcaaccaaaaaaggaaa 39551



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>emb|BX510362.9| Mouse DNA sequence from clone RP23-371L4 on chromosome 2, complete
             sequence
          Length = 98800

 Score = 40.1 bits (20), Expect = 1.3
 Identities = 30/32 (93%), Gaps = 1/32 (3%)
 Strand = Plus / Minus

                                             
Query: 79    caaaaaaggaaatcaattaatccacagctccc 110
             |||||||||||||||||| | |||||||||||
Sbjct: 55251 caaaaaaggaaatcaattca-ccacagctccc 55221



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>emb|AL713977.13| Mouse DNA sequence from clone RP23-303A21 on chromosome X, complete
             sequence
          Length = 159014

 Score = 40.1 bits (20), Expect = 1.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 75    caaccaaaaaaggaaatcaa 94
             ||||||||||||||||||||
Sbjct: 97814 caaccaaaaaaggaaatcaa 97833



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>ref|XM_634193.1| Dictyostelium discoideum hypothetical protein (DDB0218427), partial
           mRNA
          Length = 1032

 Score = 38.2 bits (19), Expect = 5.0
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                              
Query: 62  ttaattaaggaagcaacca 80
           |||||||||||||||||||
Sbjct: 788 ttaattaaggaagcaacca 770



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>gb|AC132833.10| Mus musculus chromosome 15, clone RP24-498G7, complete sequence
          Length = 154206

 Score = 38.2 bits (19), Expect = 5.0
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 83    aaaggaaatcaattaatcc 101
             |||||||||||||||||||
Sbjct: 31740 aaaggaaatcaattaatcc 31758



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>gb|CP000098.1| Methanosarcina barkeri str. fusaro plasmid 1, complete sequence
          Length = 36358

 Score = 38.2 bits (19), Expect = 5.0
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                               
Query: 54   tctacttattaattaagga 72
            |||||||||||||||||||
Sbjct: 2027 tctacttattaattaagga 2009



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>gb|AC158565.2| Mus musculus chromosome 15, clone RP24-354O12, complete sequence
          Length = 150125

 Score = 38.2 bits (19), Expect = 5.0
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 83    aaaggaaatcaattaatcc 101
             |||||||||||||||||||
Sbjct: 28534 aaaggaaatcaattaatcc 28516



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>emb|BX957219.1| Methanococcus maripaludis S2 complete genome; segment 1/5
          Length = 345730

 Score = 38.2 bits (19), Expect = 5.0
 Identities = 22/23 (95%)
 Strand = Plus / Minus

                                     
Query: 63     taattaaggaagcaaccaaaaaa 85
              |||||||||||| ||||||||||
Sbjct: 166525 taattaaggaagaaaccaaaaaa 166503



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>emb|AL591174.13| Mouse DNA sequence from clone RP23-271B20 on chromosome 11, complete
              sequence
          Length = 205379

 Score = 38.2 bits (19), Expect = 5.0
 Identities = 25/27 (92%)
 Strand = Plus / Minus

                                         
Query: 69     aggaagcaaccaaaaaaggaaatcaat 95
              |||||| ||||| ||||||||||||||
Sbjct: 179728 aggaagaaaccagaaaaggaaatcaat 179702



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>emb|BX465841.9| Zebrafish DNA sequence from clone CH211-198K5 in linkage group 21,
            complete sequence
          Length = 83186

 Score = 38.2 bits (19), Expect = 5.0
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                               
Query: 79   caaaaaaggaaatcaatta 97
            |||||||||||||||||||
Sbjct: 3290 caaaaaaggaaatcaatta 3272



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>gb|AC108110.3| Homo sapiens chromosome 5 clone RP11-265O6, complete sequence
          Length = 136730

 Score = 38.2 bits (19), Expect = 5.0
 Identities = 22/23 (95%)
 Strand = Plus / Minus

                                    
Query: 79    caaaaaaggaaatcaattaatcc 101
             ||||||||||||||||| |||||
Sbjct: 66754 caaaaaaggaaatcaatgaatcc 66732



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>gb|AC104980.5| Homo sapiens chromosome 8, clone RP11-281D17, complete sequence
          Length = 187226

 Score = 38.2 bits (19), Expect = 5.0
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                    
Query: 47    atcaagttctacttattaattaa 69
             ||||||||||||||| |||||||
Sbjct: 21975 atcaagttctacttaataattaa 21997



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>gb|AC105193.4| Homo sapiens chromosome 8, clone RP11-379M16, complete sequence
          Length = 171256

 Score = 38.2 bits (19), Expect = 5.0
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                     
Query: 47     atcaagttctacttattaattaa 69
              ||||||||||||||| |||||||
Sbjct: 139111 atcaagttctacttaataattaa 139133



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>dbj|AK041955.1| Mus musculus 3 days neonate thymus cDNA, RIKEN full-length enriched
            library, clone:A630048L09 product:unclassifiable, full
            insert sequence
          Length = 3975

 Score = 38.2 bits (19), Expect = 5.0
 Identities = 25/27 (92%)
 Strand = Plus / Plus

                                       
Query: 69   aggaagcaaccaaaaaaggaaatcaat 95
            |||||| ||||| ||||||||||||||
Sbjct: 3814 aggaagaaaccagaaaaggaaatcaat 3840



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>dbj|AK041558.1| Mus musculus 3 days neonate thymus cDNA, RIKEN full-length enriched
            library, clone:A630020N13 product:unclassifiable, full
            insert sequence
          Length = 3976

 Score = 38.2 bits (19), Expect = 5.0
 Identities = 25/27 (92%)
 Strand = Plus / Plus

                                       
Query: 69   aggaagcaaccaaaaaaggaaatcaat 95
            |||||| ||||| ||||||||||||||
Sbjct: 3815 aggaagaaaccagaaaaggaaatcaat 3841



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>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete
                sequence
          Length = 27566993

 Score = 38.2 bits (19), Expect = 5.0
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                   
Query: 43       atccatcaagttctactta 61
                |||||||||||||||||||
Sbjct: 14433502 atccatcaagttctactta 14433520



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>gb|AC026316.16| Homo sapiens 3 BAC RP11-373E16 (Roswell Park Cancer Institute Human BAC
             Library) complete sequence
          Length = 164409

 Score = 38.2 bits (19), Expect = 5.0
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 64    aattaaggaagcaaccaaa 82
             |||||||||||||||||||
Sbjct: 36364 aattaaggaagcaaccaaa 36382



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>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence
          Length = 27492551

 Score = 38.2 bits (19), Expect = 5.0
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                   
Query: 43       atccatcaagttctactta 61
                |||||||||||||||||||
Sbjct: 14387786 atccatcaagttctactta 14387804



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>emb|AL731753.2|CNS08C82 Oryza sativa chromosome 12, . BAC OJ1112_B07 of library Monsanto from
             chromosome 12 of cultivar Nipponbare of ssp. japonica of
             Oryza sativa (rice), complete sequence
          Length = 118101

 Score = 38.2 bits (19), Expect = 5.0
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 43    atccatcaagttctactta 61
             |||||||||||||||||||
Sbjct: 83790 atccatcaagttctactta 83772



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>dbj|AP004289.2| Homo sapiens genomic DNA, chromosome 8q23, clone: KB1844F2
          Length = 151991

 Score = 38.2 bits (19), Expect = 5.0
 Identities = 22/23 (95%)
 Strand = Plus / Minus

                                    
Query: 47    atcaagttctacttattaattaa 69
             ||||||||||||||| |||||||
Sbjct: 48564 atcaagttctacttaataattaa 48542


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 1,391,346
Number of Sequences: 3902068
Number of extensions: 1391346
Number of successful extensions: 97755
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 21
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 97607
Number of HSP's gapped (non-prelim): 149
length of query: 110
length of database: 17,233,045,268
effective HSP length: 21
effective length of query: 89
effective length of database: 17,151,101,840
effective search space: 1526448063760
effective search space used: 1526448063760
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 19 (38.2 bits)
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