>UL52_EBV (P03193) Helicase/primase complex protein (Probable DNA replication|
           protein BSLF1)
          Length = 874

 Score = 30.8 bits (68), Expect = 0.81
 Identities = 14/39 (35%), Positives = 21/39 (53%)
 Frame = -3

Query: 249 SKHVRTYVRRRTALAMHITHANVRTRMEHLLFFRWIGSP 133
           ++H+RTY  R T LA H+    ++ RME    + W   P
Sbjct: 312 AEHMRTYFTRETYLAEHVRVQQLKIRMEPPAPYTWDPDP 350

>NUP1_YEAST (P20676) Nucleoporin NUP1 (Nuclear pore protein NUP1)|
          Length = 1076

 Score = 28.1 bits (61), Expect = 5.3
 Identities = 13/37 (35%), Positives = 19/37 (51%)
 Frame = +2

Query: 2   EECTSSCLITMANKLTHQHNHNYTGFNHHKKKQESPT 112
           E   S+     AN     +  ++T FNH+K+K  SPT
Sbjct: 733 ESMKSTASTAAANTEKLSNGFSFTKFNHNKEKSNSPT 769

>IFRD1_MOUSE (P19182) Interferon-related developmental regulator 1 (Nerve growth|
           factor-inducible protein PC4) (TPA-induced sequence 7)
           (TIS7 protein)
          Length = 449

 Score = 28.1 bits (61), Expect = 5.3
 Identities = 11/40 (27%), Positives = 25/40 (62%), Gaps = 1/40 (2%)
 Frame = +2

Query: 194 VICM-ASAVRRRTYVRTCLLLCSYLDTGERPQIHNNLKCF 310
           +IC  A++++ R    TC  +C ++ T +  ++++ L+CF
Sbjct: 174 IICDGAASIQARQTCATCFGVCCFIATDDITELYSTLECF 213

>MYF5_XENLA (P24700) Myogenic factor 5 (Myf-5)|
          Length = 255

 Score = 27.7 bits (60), Expect = 6.9
 Identities = 19/64 (29%), Positives = 28/64 (43%), Gaps = 1/64 (1%)
 Frame = +2

Query: 14  SSCLITMANKLTHQHNHNYTGFNHHKKKQESPT*NVHIR*GDPI-HRKNNKCSMRVRTFA 190
           SSC+ +     T  + H  + +  HKK  E    + H+R   PI H +   C M    +A
Sbjct: 18  SSCIPSPEEGYTEDYEHGMSIYGAHKKDLEESDEDEHVR--APIGHHQAGNCLM----WA 71

Query: 191 CVIC 202
           C  C
Sbjct: 72  CKAC 75

>SNF1_CANAL (P52497) Carbon catabolite derepressing protein kinase (EC|
           2.7.11.1)
          Length = 620

 Score = 27.3 bits (59), Expect = 9.0
 Identities = 9/24 (37%), Positives = 16/24 (66%)
 Frame = +2

Query: 35  ANKLTHQHNHNYTGFNHHKKKQES 106
           A++  HQHNH++   +HH  + +S
Sbjct: 11  ADQQQHQHNHHHHHHHHHHNENQS 34

>CLK1_HUMAN (P49759) Dual specificity protein kinase CLK1 (EC 2.7.12.1)|
           (CDC-like kinase 1)
          Length = 484

 Score = 27.3 bits (59), Expect = 9.0
 Identities = 20/73 (27%), Positives = 31/73 (42%)
 Frame = -1

Query: 311 ENILSYCEFVVALPCQGSCTKVSTYVRTYDDALHLPCISRMQTYVHAWNICYSFDGSGLL 132
           +N+  YCE         S  +V  ++ T D      C+  ++ + H  +IC  F+  GL 
Sbjct: 194 KNVDRYCE------AARSEIQVLEHLNTTDPNSTFRCVQMLEWFEHHGHICIVFELLGLS 247

Query: 131 TVCVHFTWGFLAF 93
           T       GFL F
Sbjct: 248 TYDFIKENGFLPF 260

>BEX3_RAT (Q6PDU5) Protein BEX3 (Brain-expressed X-linked protein 3 homolog)|
           (rBex3) (p75NTR-associated cell death executor) (Nerve
           growth factor receptor-associated protein 1)
          Length = 130

 Score = 27.3 bits (59), Expect = 9.0
 Identities = 11/25 (44%), Positives = 14/25 (56%), Gaps = 3/25 (12%)
 Frame = +2

Query: 35  ANKLTHQHNHNYT---GFNHHKKKQ 100
           AN   H HNHN+      NHH++ Q
Sbjct: 34  ANNNNHNHNHNHNHNHNHNHHRRGQ 58

>S28A1_RAT (Q62674) Sodium/nucleoside cotransporter 1 (Na(+)/nucleoside|
           cotransporter 1) (Sodium-coupled nucleoside transporter
           1) (Concentrative nucleoside transporter 1) (CNT 1)
          Length = 648

 Score = 27.3 bits (59), Expect = 9.0
 Identities = 16/43 (37%), Positives = 21/43 (48%)
 Frame = -3

Query: 213 ALAMHITHANVRTRMEHLLFFRWIGSPHRMCTFYVGLSCFFLW 85
           ALA+ I    V   + + L  R +GS  R C  + G SC  LW
Sbjct: 109 ALALLIITCVVLVFLAYDLLKRLLGSKLRRCVKFQGHSCLSLW 151

>MATK_PSEMZ (Q9MV48) Maturase K (Intron maturase)|
          Length = 515

 Score = 27.3 bits (59), Expect = 9.0
 Identities = 18/53 (33%), Positives = 27/53 (50%), Gaps = 8/53 (15%)
 Frame = -3

Query: 231 YVR--RRTALAMHITHANVRTRMEHLLFFR------WIGSPHRMCTFYVGLSC 97
           YVR   R+ +A+  TH  V+    HLL FR      W   P+R+C+  +  +C
Sbjct: 274 YVRYGERSIIAIKGTHLLVKKCRYHLLIFRQCYFHLWF-EPYRVCSHQLSKNC 325

>RNAS1_MICNV (Q9WUV3) Ribonuclease pancreatic precursor (EC 3.1.27.5) (RNase 1)|
           (RNase A)
          Length = 148

 Score = 27.3 bits (59), Expect = 9.0
 Identities = 14/48 (29%), Positives = 22/48 (45%)
 Frame = -1

Query: 266 QGSCTKVSTYVRTYDDALHLPCISRMQTYVHAWNICYSFDGSGLLTVC 123
           QG C  V+T+V     A+H  C  +  T  +  + CY    +  +T C
Sbjct: 61  QGYCKPVNTFVHEPQTAVHAVCSQKNVTCKNGNSNCYKSHSALHITDC 108


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 58,464,736
Number of Sequences: 219361
Number of extensions: 1190310
Number of successful extensions: 2953
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 2839
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2939
length of database: 80,573,946
effective HSP length: 107
effective length of database: 57,102,319
effective search space used: 1370455656
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)