ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbart60c02
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1emb|CR925859.4| Zebrafish DNA sequence from clone CH211-160L12 i... 42 0.35
2gb|AE005174.2| Escherichia coli O157:H7 EDL933, complete genome 40 1.4
3dbj|BA000007.2| Escherichia coli O157:H7 DNA, complete genome 40 1.4
4emb|AL451084.19| Human DNA sequence from clone RP11-357H24 on ch... 38 5.4
5emb|AJ630363.1| Canis familiaris MHC class II region on chromoso... 38 5.4
6ref|XM_694825.1| PREDICTED: Danio rerio similar to Zinc finger p... 38 5.4
7dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic D... 38 5.4
8dbj|AP006460.4| Oryza sativa (japonica cultivar-group) genomic D... 38 5.4
9emb|AJ270774.1|HSA270774 Homo sapiens partial TCF-4 gene for T-c... 38 5.4

>emb|CR925859.4| Zebrafish DNA sequence from clone CH211-160L12 in linkage group 10,
            complete sequence
          Length = 24181

 Score = 42.1 bits (21), Expect = 0.35
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 58   caaaagcacaaacaaacgaac 78
            |||||||||||||||||||||
Sbjct: 9811 caaaagcacaaacaaacgaac 9791



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>gb|AE005174.2| Escherichia coli O157:H7 EDL933, complete genome
          Length = 5528445

 Score = 40.1 bits (20), Expect = 1.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 37     tgaacaacacgcggtttcag 56
              ||||||||||||||||||||
Sbjct: 192841 tgaacaacacgcggtttcag 192822



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>dbj|BA000007.2| Escherichia coli O157:H7 DNA, complete genome
          Length = 5498450

 Score = 40.1 bits (20), Expect = 1.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 37     tgaacaacacgcggtttcag 56
              ||||||||||||||||||||
Sbjct: 192840 tgaacaacacgcggtttcag 192821



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>emb|AL451084.19| Human DNA sequence from clone RP11-357H24 on chromosome 10 Contains the
             3' end of the TCF7L2 gene for transcription factor 7-like
             2 (T-cell specific, HMG-box), complete sequence
          Length = 183815

 Score = 38.2 bits (19), Expect = 5.4
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 28    tctgtactctgaacaacac 46
             |||||||||||||||||||
Sbjct: 20292 tctgtactctgaacaacac 20310



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>emb|AJ630363.1| Canis familiaris MHC class II region on chromosome CFA12, partial
             sequence, BAC clones 224p2 and 282j14, containing DLA-DQA1
             gene, DLA-DQB1 gene and DLA-DQB pseudogene
          Length = 180560

 Score = 38.2 bits (19), Expect = 5.4
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 51    tttcagtcaaaagcacaaa 69
             |||||||||||||||||||
Sbjct: 85430 tttcagtcaaaagcacaaa 85412



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>ref|XM_694825.1| PREDICTED: Danio rerio similar to Zinc finger protein 180 (HHZ168)
           (LOC571254), partial mRNA
          Length = 1020

 Score = 38.2 bits (19), Expect = 5.4
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                              
Query: 50  gtttcagtcaaaagcacaa 68
           |||||||||||||||||||
Sbjct: 334 gtttcagtcaaaagcacaa 352



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>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete
                sequence
          Length = 29644043

 Score = 38.2 bits (19), Expect = 5.4
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                       
Query: 51       tttcagtcaaaagcacaaacaaa 73
                ||||||||||||||| |||||||
Sbjct: 27415534 tttcagtcaaaagcataaacaaa 27415556



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>dbj|AP006460.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC
              clone:OSJNBb0003M19
          Length = 171790

 Score = 38.2 bits (19), Expect = 5.4
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                     
Query: 51     tttcagtcaaaagcacaaacaaa 73
              ||||||||||||||| |||||||
Sbjct: 121195 tttcagtcaaaagcataaacaaa 121217



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>emb|AJ270774.1|HSA270774 Homo sapiens partial TCF-4 gene for T-cell transcription factor-4,
             exons 6-11
          Length = 24413

 Score = 38.2 bits (19), Expect = 5.4
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 28    tctgtactctgaacaacac 46
             |||||||||||||||||||
Sbjct: 14243 tctgtactctgaacaacac 14261


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 855,066
Number of Sequences: 3902068
Number of extensions: 855066
Number of successful extensions: 61884
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 61809
Number of HSP's gapped (non-prelim): 75
length of query: 118
length of database: 17,233,045,268
effective HSP length: 21
effective length of query: 97
effective length of database: 17,151,101,840
effective search space: 1663656878480
effective search space used: 1663656878480
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 19 (38.2 bits)
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