Clone Name | rbart60b10 |
---|---|
Clone Library Name | barley_pub |
>gb|U86763.1|TAU86763 Triticum aestivum delta-type tonoplast intrinsic protein mRNA, complete cds Length = 1067 Score = 121 bits (61), Expect = 1e-24 Identities = 152/183 (83%), Gaps = 17/183 (9%) Strand = Plus / Minus Query: 138 gcttcgatctgaaccaaacaacatgacgttcttcacatcatcgagacatt-------ctg 190 ||||||||||||||||||||||| || ||||||||||||||||| ||||| ||| Sbjct: 932 gcttcgatctgaaccaaacaacaggatgttcttcacatcatcgaaacattcgtgagactg 873 Query: 191 accaccacgcacgcacttttttatgttgccgaaggcatcatggaaaccaaacaccgaacg 250 |||||||| |||||| ||||||||||||||||||||| |||| |||||||| Sbjct: 872 cccaccacgtacgcac-tttttatgttgccgaaggcattatgg---------accgaacg 823 Query: 251 acccttcacatggatggcttaatagtcgttgctggcgacgggggtgtggttgtcgcacat 310 || |||| ||||| ||||||| |||||||||| |||||||||| |||||| ||| ||||| Sbjct: 822 actcttcccatggctggcttagtagtcgttgccggcgacggggctgtggtcgtcccacat 763 Query: 311 gta 313 ||| Sbjct: 762 gta 760 Score = 115 bits (58), Expect = 9e-23 Identities = 84/92 (91%), Gaps = 3/92 (3%) Strand = Plus / Minus Query: 27 atcgcataaggaaactcaactgaagaattctcaaaccccaacaacttcacaacatcacat 86 |||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||| Sbjct: 1027 atcgcataaggaaactcaactgaaaaattctcaaaccccaccaacttcacaacatcacat 968 Query: 87 tatattacagatagagaagcatgcatcatcca 118 | ||||||||| || | ||||||||||||| Sbjct: 967 t---ttacagataaaggaacatgcatcatcca 939
>gb|AY525641.1| Triticum aestivum delta tonoplast intrinsic protein TIP2;3 mRNA, complete cds Length = 829 Score = 61.9 bits (31), Expect = 1e-06 Identities = 43/47 (91%) Strand = Plus / Minus Query: 267 gcttaatagtcgttgctggcgacgggggtgtggttgtcgcacatgta 313 ||||| |||||||||| |||||||| |||||||| |||||||||||| Sbjct: 800 gcttagtagtcgttgccggcgacggcggtgtggtcgtcgcacatgta 754
>gb|AY525639.1| Triticum aestivum delta tonoplast intrinsic protein TIP2;1 mRNA, complete cds Length = 817 Score = 58.0 bits (29), Expect = 2e-05 Identities = 44/49 (89%) Strand = Plus / Minus Query: 265 tggcttaatagtcgttgctggcgacgggggtgtggttgtcgcacatgta 313 ||||||| |||||||||| |||||||| | |||||| |||||||||||| Sbjct: 806 tggcttagtagtcgttgccggcgacggagctgtggtcgtcgcacatgta 758
>gb|AY525640.1| Triticum aestivum delta tonoplast intrinsic protein TIP2;2 mRNA, complete cds Length = 853 Score = 50.1 bits (25), Expect = 0.004 Identities = 37/41 (90%) Strand = Plus / Minus Query: 273 tagtcgttgctggcgacgggggtgtggttgtcgcacatgta 313 |||||||||| |||||||| | |||||| |||||||||||| Sbjct: 797 tagtcgttgccggcgacggagctgtggtcgtcgcacatgta 757
>emb|BX470264.22| Zebrafish DNA sequence from clone CH211-252F13 in linkage group 7, complete sequence Length = 168673 Score = 42.1 bits (21), Expect = 1.0 Identities = 21/21 (100%) Strand = Plus / Plus Query: 72 ttcacaacatcacattatatt 92 ||||||||||||||||||||| Sbjct: 78807 ttcacaacatcacattatatt 78827
>gb|AC165149.5| Mus musculus BAC clone RP24-114C10 from chromosome 13, complete sequence Length = 191162 Score = 40.1 bits (20), Expect = 4.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 36 ggaaactcaactgaagaatt 55 |||||||||||||||||||| Sbjct: 13923 ggaaactcaactgaagaatt 13942
>ref|NM_020416.2| Homo sapiens protein phosphatase 2 (formerly 2A), regulatory subunit B (PR 52), gamma isoform (PPP2R2C), transcript variant 1, mRNA Length = 4117 Score = 40.1 bits (20), Expect = 4.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 59 aaaccccaacaacttcacaa 78 |||||||||||||||||||| Sbjct: 3856 aaaccccaacaacttcacaa 3837
>ref|NM_181876.1| Homo sapiens protein phosphatase 2 (formerly 2A), regulatory subunit B (PR 52), gamma isoform (PPP2R2C), transcript variant 2, mRNA Length = 4087 Score = 40.1 bits (20), Expect = 4.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 59 aaaccccaacaacttcacaa 78 |||||||||||||||||||| Sbjct: 3826 aaaccccaacaacttcacaa 3807
>gb|AC121551.11| Mus musculus chromosome 1, clone RP24-144H23, complete sequence Length = 168683 Score = 40.1 bits (20), Expect = 4.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 36 ggaaactcaactgaagaatt 55 |||||||||||||||||||| Sbjct: 136133 ggaaactcaactgaagaatt 136114
>gb|AC006012.2| Homo sapiens PAC clone RP5-942I16 from 7, complete sequence Length = 121598 Score = 40.1 bits (20), Expect = 4.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 224 ggcatcatggaaaccaaaca 243 |||||||||||||||||||| Sbjct: 113843 ggcatcatggaaaccaaaca 113824
>gb|AC117212.5| Mus musculus BAC clone RP23-302A24 from chromosome 6, complete sequence Length = 212735 Score = 40.1 bits (20), Expect = 4.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 59 aaaccccaacaacttcacaa 78 |||||||||||||||||||| Sbjct: 57462 aaaccccaacaacttcacaa 57481
>gb|BC021735.2| Homo sapiens protein phosphatase 2 (formerly 2A), regulatory subunit B (PR 52), gamma isoform, mRNA (cDNA clone IMAGE:4816112) Length = 1172 Score = 40.1 bits (20), Expect = 4.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 59 aaaccccaacaacttcacaa 78 |||||||||||||||||||| Sbjct: 918 aaaccccaacaacttcacaa 899
>gb|BC045682.1| Homo sapiens protein phosphatase 2 (formerly 2A), regulatory subunit B (PR 52), gamma isoform, mRNA (cDNA clone IMAGE:5300526) Length = 2161 Score = 40.1 bits (20), Expect = 4.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 59 aaaccccaacaacttcacaa 78 |||||||||||||||||||| Sbjct: 1900 aaaccccaacaacttcacaa 1881
>dbj|AK127386.1| Homo sapiens cDNA FLJ45468 fis, clone BRSTN2015788 Length = 1737 Score = 40.1 bits (20), Expect = 4.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 59 aaaccccaacaacttcacaa 78 |||||||||||||||||||| Sbjct: 1499 aaaccccaacaacttcacaa 1480
>gb|AC068733.12| Homo sapiens chromosome 11, clone RP11-304C12, complete sequence Length = 191656 Score = 40.1 bits (20), Expect = 4.1 Identities = 23/24 (95%) Strand = Plus / Plus Query: 55 tctcaaaccccaacaacttcacaa 78 ||||||||||||||| |||||||| Sbjct: 107696 tctcaaaccccaacaccttcacaa 107719
>gb|AC073589.6| Mus musculus strain C57BL/6J chromosome 12 clone RP23-147E23, complete sequence Length = 222430 Score = 40.1 bits (20), Expect = 4.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 145 tctgaaccaaacaacatgac 164 |||||||||||||||||||| Sbjct: 111593 tctgaaccaaacaacatgac 111574
>gb|AC084327.5| Mus musculus strain C57BL6/J chromosome 6 clone RP23-367K14, complete sequence Length = 108667 Score = 40.1 bits (20), Expect = 4.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 59 aaaccccaacaacttcacaa 78 |||||||||||||||||||| Sbjct: 32732 aaaccccaacaacttcacaa 32713
>gb|AC116317.4| Homo sapiens BAC clone RP11-1406H17 from 4, complete sequence Length = 160943 Score = 40.1 bits (20), Expect = 4.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 59 aaaccccaacaacttcacaa 78 |||||||||||||||||||| Sbjct: 82311 aaaccccaacaacttcacaa 82330
>tpe|BN000872.1| TPA: TPA_exp: Mus musculus immunoglobulin heavy chain variable region locus, strain C57BL/6 Length = 2500000 Score = 40.1 bits (20), Expect = 4.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 145 tctgaaccaaacaacatgac 164 |||||||||||||||||||| Sbjct: 1893522 tctgaaccaaacaacatgac 1893503 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 2,798,128 Number of Sequences: 3902068 Number of extensions: 2798128 Number of successful extensions: 50103 Number of sequences better than 10.0: 19 Number of HSP's better than 10.0 without gapping: 19 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 50058 Number of HSP's gapped (non-prelim): 43 length of query: 313 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 291 effective length of database: 17,147,199,772 effective search space: 4989835133652 effective search space used: 4989835133652 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)