ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbart60b08
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1dbj|AK059280.1| Oryza sativa (japonica cultivar-group) cDNA clon... 159 8e-36
2gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 107 3e-20
3gb|AC146619.1| Genomic sequence for Oryza sativa, Nipponbare str... 107 3e-20
4gb|AC104179.1| Genomic sequence for Oryza sativa, Nipponbare str... 107 3e-20
5dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic D... 107 3e-20
6dbj|AK121380.1| Oryza sativa (japonica cultivar-group) cDNA clon... 107 3e-20
7gb|BT016213.1| Zea mays clone Contig46 mRNA sequence 105 1e-19
8gb|AY106193.1| Zea mays PCO120598 mRNA sequence 105 1e-19
9gb|AC162616.7| Mus musculus chromosome 5, clone RP23-260P17, com... 44 0.33
10gb|DQ481663.1| Takifugu rubripes HoxAa gene cluster, complete se... 42 1.3
11gb|AC099035.2| Drosophila melanogaster clone BACR37H13, complete... 40 5.2
12ref|XM_370396.1| Magnaporthe grisea 70-15 chromosome II hypothet... 40 5.2
13ref|XM_878287.1| PREDICTED: Bos taurus similar to heat shock 70k... 40 5.2
14gb|AY625701.1| Paramisgurnus dabryanus cytochrome b (cytb) gene,... 40 5.2
15gb|AC008352.2|AC008352 Drosophila melanogaster, chromosome 2R, r... 40 5.2
16gb|AC007177.1|AC007177 Drosophila melanogaster, chromosome 2R, r... 40 5.2
17gb|AE003459.3| Drosophila melanogaster chromosome 2R, section 67... 40 5.2 
>dbj|AK059280.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-025-C11, full
            insert sequence
          Length = 1285

 Score =  159 bits (80), Expect = 8e-36
 Identities = 125/140 (89%)
 Strand = Plus / Minus

                                                                        
Query: 244  ggtaactcgagcaccttgtgcattccttttgacctgcttcccggcctaaactggttcccc 303
            ||||| || |||||||||||| ||||||||||  ||||||| || ||||| ||||| || 
Sbjct: 1080 ggtaattcaagcaccttgtgcgttccttttgatttgcttcctggtctaaattggtttcct 1021

                                                                        
Query: 304  tcaatgtacagctccttcagaaacggatgcttgtataatccttcaggaatccttccaatg 363
            ||||||||||||||||||| ||| ||||| ||||||||||||||||||||||| ||||||
Sbjct: 1020 tcaatgtacagctccttcaaaaatggatgtttgtataatccttcaggaatcctcccaatg 961

                                
Query: 364  aagttgttgttgtccaagta 383
            |||||||| |||||||||||
Sbjct: 960  aagttgttattgtccaagta 941
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>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score =  107 bits (54), Expect = 3e-20
 Identities = 69/74 (93%)
 Strand = Plus / Plus

                                                                           
Query: 310     tacagctccttcagaaacggatgcttgtataatccttcaggaatccttccaatgaagttg 369
               ||||||||||||| ||| ||||| ||||||||||||||||||||||| ||||||||||||
Sbjct: 5809588 tacagctccttcaaaaatggatgtttgtataatccttcaggaatcctcccaatgaagttg 5809647

                             
Query: 370     ttgttgtccaagta 383
               || |||||||||||
Sbjct: 5809648 ttattgtccaagta 5809661



 Score = 58.0 bits (29), Expect = 2e-05
 Identities = 59/69 (85%)
 Strand = Plus / Plus

                                                                           
Query: 244     ggtaactcgagcaccttgtgcattccttttgacctgcttcccggcctaaactggttcccc 303
               ||||| || |||||||||||| ||||||||||  ||||||| || ||||| ||||| || 
Sbjct: 5809415 ggtaattcaagcaccttgtgcgttccttttgatttgcttcctggtctaaattggtttcct 5809474

                        
Query: 304     tcaatgtac 312
               |||||||||
Sbjct: 5809475 tcaatgtac 5809483
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>gb|AC146619.1| Genomic sequence for Oryza sativa, Nipponbare strain, clone
             OSJNAa0021B21, from chromosome 3, complete sequence
          Length = 139208

 Score =  107 bits (54), Expect = 3e-20
 Identities = 69/74 (93%)
 Strand = Plus / Plus

                                                                         
Query: 310   tacagctccttcagaaacggatgcttgtataatccttcaggaatccttccaatgaagttg 369
             ||||||||||||| ||| ||||| ||||||||||||||||||||||| ||||||||||||
Sbjct: 38418 tacagctccttcaaaaatggatgtttgtataatccttcaggaatcctcccaatgaagttg 38477

                           
Query: 370   ttgttgtccaagta 383
             || |||||||||||
Sbjct: 38478 ttattgtccaagta 38491



 Score = 58.0 bits (29), Expect = 2e-05
 Identities = 59/69 (85%)
 Strand = Plus / Plus

                                                                         
Query: 244   ggtaactcgagcaccttgtgcattccttttgacctgcttcccggcctaaactggttcccc 303
             ||||| || |||||||||||| ||||||||||  ||||||| || ||||| ||||| || 
Sbjct: 38245 ggtaattcaagcaccttgtgcgttccttttgatttgcttcctggtctaaattggtttcct 38304

                      
Query: 304   tcaatgtac 312
             |||||||||
Sbjct: 38305 tcaatgtac 38313
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>gb|AC104179.1| Genomic sequence for Oryza sativa, Nipponbare strain, clone
             OSJNBa0021B21, from chromosome 3, complete sequence
          Length = 166777

 Score =  107 bits (54), Expect = 3e-20
 Identities = 69/74 (93%)
 Strand = Plus / Minus

                                                                         
Query: 310   tacagctccttcagaaacggatgcttgtataatccttcaggaatccttccaatgaagttg 369
             ||||||||||||| ||| ||||| ||||||||||||||||||||||| ||||||||||||
Sbjct: 21583 tacagctccttcaaaaatggatgtttgtataatccttcaggaatcctcccaatgaagttg 21524

                           
Query: 370   ttgttgtccaagta 383
             || |||||||||||
Sbjct: 21523 ttattgtccaagta 21510



 Score = 58.0 bits (29), Expect = 2e-05
 Identities = 59/69 (85%)
 Strand = Plus / Minus

                                                                         
Query: 244   ggtaactcgagcaccttgtgcattccttttgacctgcttcccggcctaaactggttcccc 303
             ||||| || |||||||||||| ||||||||||  ||||||| || ||||| ||||| || 
Sbjct: 21756 ggtaattcaagcaccttgtgcgttccttttgatttgcttcctggtctaaattggtttcct 21697

                      
Query: 304   tcaatgtac 312
             |||||||||
Sbjct: 21696 tcaatgtac 21688
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>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
               sequence
          Length = 36192742

 Score =  107 bits (54), Expect = 3e-20
 Identities = 69/74 (93%)
 Strand = Plus / Plus

                                                                           
Query: 310     tacagctccttcagaaacggatgcttgtataatccttcaggaatccttccaatgaagttg 369
               ||||||||||||| ||| ||||| ||||||||||||||||||||||| ||||||||||||
Sbjct: 5808801 tacagctccttcaaaaatggatgtttgtataatccttcaggaatcctcccaatgaagttg 5808860

                             
Query: 370     ttgttgtccaagta 383
               || |||||||||||
Sbjct: 5808861 ttattgtccaagta 5808874



 Score = 58.0 bits (29), Expect = 2e-05
 Identities = 59/69 (85%)
 Strand = Plus / Plus

                                                                           
Query: 244     ggtaactcgagcaccttgtgcattccttttgacctgcttcccggcctaaactggttcccc 303
               ||||| || |||||||||||| ||||||||||  ||||||| || ||||| ||||| || 
Sbjct: 5808628 ggtaattcaagcaccttgtgcgttccttttgatttgcttcctggtctaaattggtttcct 5808687

                        
Query: 304     tcaatgtac 312
               |||||||||
Sbjct: 5808688 tcaatgtac 5808696
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>dbj|AK121380.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023127G18, full
            insert sequence
          Length = 2169

 Score =  107 bits (54), Expect = 3e-20
 Identities = 69/74 (93%)
 Strand = Plus / Minus

                                                                        
Query: 310  tacagctccttcagaaacggatgcttgtataatccttcaggaatccttccaatgaagttg 369
            ||||||||||||| ||| ||||| ||||||||||||||||||||||| ||||||||||||
Sbjct: 1576 tacagctccttcaaaaatggatgtttgtataatccttcaggaatcctcccaatgaagttg 1517

                          
Query: 370  ttgttgtccaagta 383
            || |||||||||||
Sbjct: 1516 ttattgtccaagta 1503



 Score = 58.0 bits (29), Expect = 2e-05
 Identities = 59/69 (85%)
 Strand = Plus / Minus

                                                                        
Query: 244  ggtaactcgagcaccttgtgcattccttttgacctgcttcccggcctaaactggttcccc 303
            ||||| || |||||||||||| ||||||||||  ||||||| || ||||| ||||| || 
Sbjct: 1749 ggtaattcaagcaccttgtgcgttccttttgatttgcttcctggtctaaattggtttcct 1690

                     
Query: 304  tcaatgtac 312
            |||||||||
Sbjct: 1689 tcaatgtac 1681
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>gb|BT016213.1| Zea mays clone Contig46 mRNA sequence
          Length = 1260

 Score =  105 bits (53), Expect = 1e-19
 Identities = 113/133 (84%)
 Strand = Plus / Minus

                                                                        
Query: 253  agcaccttgtgcattccttttgacctgcttcccggcctaaactggttcccctcaatgtac 312
            |||||||||||| |||| || || ||| |||| || || || ||||| || || ||||||
Sbjct: 1067 agcaccttgtgcgttcccttcgatctggttcctggtctgaagtggtttccttcgatgtac 1008

                                                                        
Query: 313  agctccttcagaaacggatgcttgtataatccttcaggaatccttccaatgaagttgttg 372
            |||||||||||||| |||||| |||| || ||||| || ||||| |||||||||||||| 
Sbjct: 1007 agctccttcagaaatggatgcctgtacaacccttccggtatcctcccaatgaagttgtta 948

                         
Query: 373  ttgtccaagtaca 385
            |||||||||||||
Sbjct: 947  ttgtccaagtaca 935
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>gb|AY106193.1| Zea mays PCO120598 mRNA sequence
          Length = 1504

 Score =  105 bits (53), Expect = 1e-19
 Identities = 113/133 (84%)
 Strand = Plus / Minus

                                                                        
Query: 253  agcaccttgtgcattccttttgacctgcttcccggcctaaactggttcccctcaatgtac 312
            |||||||||||| |||| || || ||| |||| || || || ||||| || || ||||||
Sbjct: 1097 agcaccttgtgcgttcccttcgatctggttcctggtctgaagtggtttccttcgatgtac 1038

                                                                        
Query: 313  agctccttcagaaacggatgcttgtataatccttcaggaatccttccaatgaagttgttg 372
            |||||||||||||| |||||| |||| || ||||| || ||||| |||||||||||||| 
Sbjct: 1037 agctccttcagaaatggatgcctgtacaacccttccggtatcctcccaatgaagttgtta 978

                         
Query: 373  ttgtccaagtaca 385
            |||||||||||||
Sbjct: 977  ttgtccaagtaca 965
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>gb|AC162616.7| Mus musculus chromosome 5, clone RP23-260P17, complete sequence
          Length = 180400

 Score = 44.1 bits (22), Expect = 0.33
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                   
Query: 95    tatacagatatatcatatacca 116
             ||||||||||||||||||||||
Sbjct: 79622 tatacagatatatcatatacca 79601
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>gb|DQ481663.1| Takifugu rubripes HoxAa gene cluster, complete sequence
          Length = 385816

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 338    ataatccttcaggaatccttc 358
              |||||||||||||||||||||
Sbjct: 352917 ataatccttcaggaatccttc 352937
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>gb|AC099035.2| Drosophila melanogaster clone BACR37H13, complete sequence
          Length = 175448

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 358    ccaatgaagttgttgttgtc 377
              ||||||||||||||||||||
Sbjct: 141915 ccaatgaagttgttgttgtc 141896
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>ref|XM_370396.1| Magnaporthe grisea 70-15 chromosome II hypothetical protein
           (MG06893.4) partial mRNA
          Length = 1644

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 150 gtcgtgtggagatgaagaat 169
           ||||||||||||||||||||
Sbjct: 147 gtcgtgtggagatgaagaat 128
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>ref|XM_878287.1| PREDICTED: Bos taurus similar to heat shock 70kDa protein 4 isoform
           a, transcript variant 5 (LOC536558), mRNA
          Length = 1494

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 255 caccttgtgcattccttttgacct 278
           ||||||||| ||||||||||||||
Sbjct: 460 caccttgtgtattccttttgacct 483
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>gb|AY625701.1| Paramisgurnus dabryanus cytochrome b (cytb) gene, partial cds;
           mitochondrial
          Length = 1140

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 159 agatgaagaatggtggctgc 178
           ||||||||||||||||||||
Sbjct: 590 agatgaagaatggtggctgc 571
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>gb|AC008352.2|AC008352 Drosophila melanogaster, chromosome 2R, region 59C-59D, BAC clone
             BACR08P09, complete sequence
          Length = 181463

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 358   ccaatgaagttgttgttgtc 377
             ||||||||||||||||||||
Sbjct: 78585 ccaatgaagttgttgttgtc 78566
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>gb|AC007177.1|AC007177 Drosophila melanogaster, chromosome 2R, region 59C1-59C5, P1 clones
           DS06621 and DS02186, complete sequence
          Length = 101320

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 358 ccaatgaagttgttgttgtc 377
           ||||||||||||||||||||
Sbjct: 16  ccaatgaagttgttgttgtc 35
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>gb|AE003459.3| Drosophila melanogaster chromosome 2R, section 67 of 73 of the complete
              sequence
          Length = 283700

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 358    ccaatgaagttgttgttgtc 377
              ||||||||||||||||||||
Sbjct: 144398 ccaatgaagttgttgttgtc 144379


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,329,818
Number of Sequences: 3902068
Number of extensions: 3329818
Number of successful extensions: 51888
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 17
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 51832
Number of HSP's gapped (non-prelim): 56
length of query: 391
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 369
effective length of database: 17,147,199,772
effective search space: 6327316715868
effective search space used: 6327316715868
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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