ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbart60b07
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1IPYR_MAIZE (O48556) Soluble inorganic pyrophosphatase (EC 3.6.1.... 32 0.40
2IPYR_HORVD (O23979) Soluble inorganic pyrophosphatase (EC 3.6.1.... 32 0.40
3IPYR_SOLTU (Q43187) Soluble inorganic pyrophosphatase (EC 3.6.1.... 30 2.0
4IPYR_ARATH (P21216) Soluble inorganic pyrophosphatase (EC 3.6.1.... 29 3.4
5EX5B_BUCAI (P57529) Exodeoxyribonuclease V beta chain (EC 3.1.11.5) 28 7.6
6CARA_DEIRA (Q9RWI4) Carbamoyl-phosphate synthase small chain (EC... 27 9.9

>IPYR_MAIZE (O48556) Soluble inorganic pyrophosphatase (EC 3.6.1.1)|
           (Pyrophosphate phospho-hydrolase) (PPase)
          Length = 214

 Score = 32.0 bits (71), Expect = 0.40
 Identities = 14/20 (70%), Positives = 17/20 (85%)
 Frame = -2

Query: 313 EAIQHSMDLYATYICEGLRR 254
           EAIQ+SMDLYA YI + LR+
Sbjct: 195 EAIQYSMDLYAQYILQSLRQ 214



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>IPYR_HORVD (O23979) Soluble inorganic pyrophosphatase (EC 3.6.1.1)|
           (Pyrophosphate phospho-hydrolase) (PPase)
          Length = 215

 Score = 32.0 bits (71), Expect = 0.40
 Identities = 14/20 (70%), Positives = 17/20 (85%)
 Frame = -2

Query: 313 EAIQHSMDLYATYICEGLRR 254
           EAIQ+SMDLYA YI + LR+
Sbjct: 196 EAIQYSMDLYAQYILQSLRQ 215



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>IPYR_SOLTU (Q43187) Soluble inorganic pyrophosphatase (EC 3.6.1.1)|
           (Pyrophosphate phospho-hydrolase) (PPase)
          Length = 211

 Score = 29.6 bits (65), Expect = 2.0
 Identities = 13/19 (68%), Positives = 15/19 (78%)
 Frame = -2

Query: 310 AIQHSMDLYATYICEGLRR 254
           AIQ+SMDLYA YI   LR+
Sbjct: 193 AIQYSMDLYAEYILHSLRK 211



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>IPYR_ARATH (P21216) Soluble inorganic pyrophosphatase (EC 3.6.1.1)|
           (Pyrophosphate phospho-hydrolase) (PPase)
          Length = 218

 Score = 28.9 bits (63), Expect = 3.4
 Identities = 13/20 (65%), Positives = 16/20 (80%)
 Frame = -2

Query: 313 EAIQHSMDLYATYICEGLRR 254
           +AI+ SMDLYA YI  GL+R
Sbjct: 199 DAIKDSMDLYAAYIKAGLQR 218



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>EX5B_BUCAI (P57529) Exodeoxyribonuclease V beta chain (EC 3.1.11.5)|
          Length = 1174

 Score = 27.7 bits (60), Expect = 7.6
 Identities = 11/41 (26%), Positives = 26/41 (63%), Gaps = 4/41 (9%)
 Frame = -2

Query: 220 LDDVDEKLFVSRA----LSTSSVISIHTFLFYVTYLHTYTY 110
           + D+ E ++V +     +++SS+ +IH+F  ++  LHT+ +
Sbjct: 106 IHDIKEAIYVLKRAQNDMNSSSIYTIHSFCQHILQLHTFHF 146



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>CARA_DEIRA (Q9RWI4) Carbamoyl-phosphate synthase small chain (EC 6.3.5.5)|
           (Carbamoyl-phosphate synthetase glutamine chain)
          Length = 394

 Score = 27.3 bits (59), Expect = 9.9
 Identities = 11/39 (28%), Positives = 22/39 (56%)
 Frame = -2

Query: 136 VTYLHTYTYILLVYDIDPPKPCIKAVVAAR*TGHSFPNY 20
           +TY H   Y + +YD++  KP ++  ++   +G  + NY
Sbjct: 57  ITYPHVGNYGVAIYDMESNKPYVRGFISREFSG-EYSNY 94


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 45,780,541
Number of Sequences: 219361
Number of extensions: 785130
Number of successful extensions: 1677
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1666
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1677
length of database: 80,573,946
effective HSP length: 80
effective length of database: 63,025,066
effective search space used: 1512601584
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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