ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbart60b06
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1ASO_CUCPM (P37064) L-ascorbate oxidase (EC 1.10.3.3) (Ascorbase)... 35 0.043
2ASO_CUCMA (P24792) L-ascorbate oxidase precursor (EC 1.10.3.3) (... 35 0.043
3ASO_TOBAC (Q40588) L-ascorbate oxidase precursor (EC 1.10.3.3) (... 32 0.47
4ASO_CUCSA (P14133) L-ascorbate oxidase precursor (EC 1.10.3.3) (... 31 0.62
5Y1282_METJA (Q58678) Hypothetical UPF0252 protein MJ1282 28 4.0
6CYB_MYOYA (Q7Y8K8) Cytochrome b 28 6.8

>ASO_CUCPM (P37064) L-ascorbate oxidase (EC 1.10.3.3) (Ascorbase) (ASO)|
          Length = 552

 Score = 35.0 bits (79), Expect = 0.043
 Identities = 13/24 (54%), Positives = 18/24 (75%)
 Frame = -2

Query: 402 MGMGVAFEEGIERVGKLPEEITRC 331
           MGMGV F EG+E+VG++P +   C
Sbjct: 515 MGMGVVFAEGVEKVGRIPTKALAC 538



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>ASO_CUCMA (P24792) L-ascorbate oxidase precursor (EC 1.10.3.3) (Ascorbase)|
           (ASO)
          Length = 579

 Score = 35.0 bits (79), Expect = 0.043
 Identities = 13/24 (54%), Positives = 18/24 (75%)
 Frame = -2

Query: 402 MGMGVAFEEGIERVGKLPEEITRC 331
           MGMGV F EG+E+VG++P +   C
Sbjct: 545 MGMGVVFAEGVEKVGRIPTKALAC 568



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>ASO_TOBAC (Q40588) L-ascorbate oxidase precursor (EC 1.10.3.3) (Ascorbase)|
           (ASO)
          Length = 578

 Score = 31.6 bits (70), Expect = 0.47
 Identities = 13/24 (54%), Positives = 16/24 (66%)
 Frame = -2

Query: 402 MGMGVAFEEGIERVGKLPEEITRC 331
           MGMGV F EG+  V K+P+E   C
Sbjct: 542 MGMGVIFAEGVHLVKKIPKEALAC 565



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>ASO_CUCSA (P14133) L-ascorbate oxidase precursor (EC 1.10.3.3) (Ascorbase)|
           (ASO)
          Length = 587

 Score = 31.2 bits (69), Expect = 0.62
 Identities = 13/26 (50%), Positives = 16/26 (61%)
 Frame = -2

Query: 402 MGMGVAFEEGIERVGKLPEEITRCVS 325
           MGMGV F EG+  VG +P +   C S
Sbjct: 551 MGMGVVFAEGVHMVGMIPPKALACGS 576



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>Y1282_METJA (Q58678) Hypothetical UPF0252 protein MJ1282|
          Length = 352

 Score = 28.5 bits (62), Expect = 4.0
 Identities = 11/30 (36%), Positives = 20/30 (66%)
 Frame = -2

Query: 135 LRHMLISFSLSLILQHIFQ*ANCWTINHVC 46
           +R +++ F + LILQ+I+     + +NHVC
Sbjct: 1   MRKIILIFFIFLILQNIYAYEKIYDVNHVC 30



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>CYB_MYOYA (Q7Y8K8) Cytochrome b|
          Length = 379

 Score = 27.7 bits (60), Expect = 6.8
 Identities = 21/68 (30%), Positives = 32/68 (47%), Gaps = 4/68 (5%)
 Frame = -3

Query: 227 FFTFNYLFSQTFTVEILSSNSLYFSFGSNRA*GICS----YPFHYL*YYNTFSSEQIVGL 60
           FFTF++LF       ++         GSN   GI S     PFH   YY   + + ++GL
Sbjct: 178 FFTFHFLFPFIVAAMVMVHLLFLHETGSNNPTGIPSNTDMIPFHP--YY---TIKDVLGL 232

Query: 59  LIMYVQII 36
           L+M   ++
Sbjct: 233 LLMITALL 240


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 45,497,541
Number of Sequences: 219361
Number of extensions: 748261
Number of successful extensions: 1860
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1848
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1860
length of database: 80,573,946
effective HSP length: 109
effective length of database: 56,663,597
effective search space used: 1359926328
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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