ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbart60b06 |
|---|---|
| Clone Library Name | barley_pub |
>ref|XM_450643.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1731 Score = 75.8 bits (38), Expect = 1e-10 Identities = 65/74 (87%) Strand = Plus / Minus Query: 330 cgcagcgcgtgatctcctccgggagcttgccgacgcgctcgatgccctcctcgaaggcga 389 |||||| | |||||||| ||| |||| |||||||||||||| ||||||||||||| ||| Sbjct: 1708 cgcagcccatgatctccggcggcagctcgccgacgcgctcgacgccctcctcgaagacga 1649 Query: 390 cgcccatgcccatg 403 ||||||||||||| Sbjct: 1648 tgcccatgcccatg 1635
>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete sequence Length = 22696651 Score = 75.8 bits (38), Expect = 1e-10 Identities = 65/74 (87%) Strand = Plus / Plus Query: 330 cgcagcgcgtgatctcctccgggagcttgccgacgcgctcgatgccctcctcgaaggcga 389 |||||| | |||||||| ||| |||| |||||||||||||| ||||||||||||| ||| Sbjct: 11976552 cgcagcccatgatctccggcggcagctcgccgacgcgctcgacgccctcctcgaagacga 11976611 Query: 390 cgcccatgcccatg 403 ||||||||||||| Sbjct: 11976612 tgcccatgcccatg 11976625 Score = 40.1 bits (20), Expect = 5.4 Identities = 32/36 (88%) Strand = Plus / Minus Query: 368 tcgatgccctcctcgaaggcgacgcccatgcccatg 403 |||| |||||||||||| | ||||||||||||||| Sbjct: 19370014 tcgacgccctcctcgaacaccacgcccatgcccatg 19369979
>dbj|AP005422.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, PAC clone:P0441A12 Length = 185437 Score = 75.8 bits (38), Expect = 1e-10 Identities = 65/74 (87%) Strand = Plus / Plus Query: 330 cgcagcgcgtgatctcctccgggagcttgccgacgcgctcgatgccctcctcgaaggcga 389 |||||| | |||||||| ||| |||| |||||||||||||| ||||||||||||| ||| Sbjct: 81032 cgcagcccatgatctccggcggcagctcgccgacgcgctcgacgccctcctcgaagacga 81091 Query: 390 cgcccatgcccatg 403 ||||||||||||| Sbjct: 81092 tgcccatgcccatg 81105
>gb|AC128667.3| Mus musculus BAC clone RP24-160B11 from chromosome 17, complete sequence Length = 164685 Score = 48.1 bits (24), Expect = 0.022 Identities = 24/24 (100%) Strand = Plus / Minus Query: 148 ccaaaggaaaaatataaggaatta 171 |||||||||||||||||||||||| Sbjct: 47531 ccaaaggaaaaatataaggaatta 47508
>gb|AC153018.4| Mus musculus BAC clone RP23-95J19 from chromosome 17, complete sequence Length = 223539 Score = 48.1 bits (24), Expect = 0.022 Identities = 24/24 (100%) Strand = Plus / Plus Query: 148 ccaaaggaaaaatataaggaatta 171 |||||||||||||||||||||||| Sbjct: 62082 ccaaaggaaaaatataaggaatta 62105
>emb|AL606590.3|OSJN00031 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0052O21, complete sequence Length = 166475 Score = 44.1 bits (22), Expect = 0.35 Identities = 28/30 (93%) Strand = Plus / Minus Query: 130 ccttaggccctgtttgaaccaaaggaaaaa 159 ||||||||||| |||||| ||||||||||| Sbjct: 98940 ccttaggccctctttgaatcaaaggaaaaa 98911
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete sequence Length = 35498469 Score = 44.1 bits (22), Expect = 0.35 Identities = 28/30 (93%) Strand = Plus / Minus Query: 130 ccttaggccctgtttgaaccaaaggaaaaa 159 ||||||||||| |||||| ||||||||||| Sbjct: 7077749 ccttaggccctctttgaatcaaaggaaaaa 7077720
>gb|CP000148.1| Geobacter metallireducens GS-15, complete genome Length = 3997420 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 347 tccgggagcttgccgacgcgc 367 ||||||||||||||||||||| Sbjct: 2980441 tccgggagcttgccgacgcgc 2980421
>ref|XM_647158.1| Entamoeba histolytica HM-1:IMSS hypothetical protein (126.t00015) partial mRNA Length = 1458 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 94 taatatcaaagataatgaaaa 114 ||||||||||||||||||||| Sbjct: 1116 taatatcaaagataatgaaaa 1136
>emb|AJ972409.1| Spiroplasma citri pBJS-O plasmid, complete sequence Length = 13374 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 94 taatatcaaagataatgaaaa 114 ||||||||||||||||||||| Sbjct: 1695 taatatcaaagataatgaaaa 1715
>emb|BX248398.9| Human DNA sequence from clone RP6-137J22 on chromosome 1 Contains a novel gene, the gene for a novel protein similar to cyclophilin-LC (cyclophilin homolog overexpressed in liver cancer (chromosome 1 amplified sequence 2)) and a CpG island, complete sequence Length = 127263 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 219 tgtgaagaatgaatgaaatta 239 ||||||||||||||||||||| Sbjct: 105289 tgtgaagaatgaatgaaatta 105309
>emb|AL161613.23| Human DNA sequence from clone RP11-22J15 on chromosome 13 Contains the 5' end of the LATS2 gene for LATS, large tumor suppressor, homolog 2 (LATS (large tumor suppressor, Drosophila) homolog 2), a ribosomal protein S12 (40S ribosomal protein S12) (RPS12) pseudogene, a chromosome 9 open reading frame 12 (C9orf12) (INSP5K2, FLJ13161)pseudogene and two CpG islands, complete sequence Length = 113372 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 203 aaaataaataattgaatgtga 223 ||||||||||||||||||||| Sbjct: 50524 aaaataaataattgaatgtga 50544
>emb|AL022240.8|HS328E19 Human DNA sequence from clone RP3-328E19 on chromosome 1q12-21.2 Contains the 5' end of a novel gene, a peptidylprolyl isomerase A (cyclophilin A) (PPIA) pseudogene, a novel pseudogene, the 3' end of a novel gene and a CpG island, complete sequence Length = 97619 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 219 tgtgaagaatgaatgaaatta 239 ||||||||||||||||||||| Sbjct: 42510 tgtgaagaatgaatgaaatta 42530
>gb|BT008984.1| Triticum aestivum clone wdk2c.pk007.b15:fis, full insert mRNA sequence Length = 2056 Score = 42.1 bits (21), Expect = 1.4 Identities = 42/49 (85%) Strand = Plus / Minus Query: 355 cttgccgacgcgctcgatgccctcctcgaaggcgacgcccatgcccatg 403 |||||||||||| |||||| |||| ||||| ||| |||||||||||| Sbjct: 1750 cttgccgacgcggtcgatggcctcggcgaagatgacccccatgcccatg 1702
>dbj|BA000038.2| Vibrio vulnificus YJ016 DNA, chromosome II, complete sequence Length = 1857073 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 137 ccctgtttgaaccaaaggaaa 157 ||||||||||||||||||||| Sbjct: 1117556 ccctgtttgaaccaaaggaaa 1117536
>gb|AC174352.7| Medicago truncatula clone mth2-7o1, complete sequence Length = 121626 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 218 atgtgaagaatgaatgaaatt 238 ||||||||||||||||||||| Sbjct: 53067 atgtgaagaatgaatgaaatt 53087
>gb|AC011884.8| Homo sapiens chromosome , clone RP11-17N6, complete sequence Length = 163009 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 209 aataattgaatgtgaagaatg 229 ||||||||||||||||||||| Sbjct: 3897 aataattgaatgtgaagaatg 3917
>gb|AC018683.4|AC018683 Homo sapiens BAC clone RP11-423P14 from 4, complete sequence Length = 201907 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 151 aaggaaaaatataaggaatta 171 ||||||||||||||||||||| Sbjct: 30654 aaggaaaaatataaggaatta 30674
>emb|BX255944.7| Zebrafish DNA sequence from clone CH211-241L20, complete sequence Length = 169165 Score = 42.1 bits (21), Expect = 1.4 Identities = 24/25 (96%) Strand = Plus / Plus Query: 88 gtgttgtaatatcaaagataatgaa 112 |||||||||||||||| |||||||| Sbjct: 61734 gtgttgtaatatcaaaaataatgaa 61758
>gb|CP000251.1| Anaeromyxobacter dehalogenans 2CP-C, complete genome Length = 5013479 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 368 tcgatgccctcctcgaaggcg 388 ||||||||||||||||||||| Sbjct: 4136824 tcgatgccctcctcgaaggcg 4136804
>emb|BX276095.7| Zebrafish DNA sequence from clone CH211-225H17, complete sequence Length = 197554 Score = 42.1 bits (21), Expect = 1.4 Identities = 27/29 (93%) Strand = Plus / Plus Query: 209 aataattgaatgtgaagaatgaatgaaat 237 |||||||||||| ||||||||||||||| Sbjct: 190567 aataattgaatgaaaagaatgaatgaaat 190595
>emb|AJ297706.1|SCI297706 Spiroplasma citri soj gene (partial), ORF2, p89 gene and ORF4 (partial) Length = 4273 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 94 taatatcaaagataatgaaaa 114 ||||||||||||||||||||| Sbjct: 474 taatatcaaagataatgaaaa 494
>emb|AJ969074.1| Spiroplasma citri plasmid pSci6 Length = 35318 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 94 taatatcaaagataatgaaaa 114 ||||||||||||||||||||| Sbjct: 1585 taatatcaaagataatgaaaa 1565
>emb|AJ969070.1| Spiroplasma citri pSci2 plasmid Length = 14407 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 94 taatatcaaagataatgaaaa 114 ||||||||||||||||||||| Sbjct: 1086 taatatcaaagataatgaaaa 1106
>ref|NG_001019.4| Homo sapiens immunoglobulin heavy locus (IGH@) on chromosome 14 Length = 1279711 Score = 42.1 bits (21), Expect = 1.4 Identities = 27/29 (93%) Strand = Plus / Minus Query: 40 atttgtacatacatgattaatagtccaac 68 |||||||||||| | |||||||||||||| Sbjct: 285998 atttgtacatacttaattaatagtccaac 285970
>gb|CP000086.1| Burkholderia thailandensis E264 chromosome I, complete sequence Length = 3809201 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 351 ggagcttgccgacgcgctcga 371 ||||||||||||||||||||| Sbjct: 2536960 ggagcttgccgacgcgctcga 2536980
>gb|AE016796.1| Vibrio vulnificus CMCP6 chromosome II, complete sequence Length = 1844853 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 137 ccctgtttgaaccaaaggaaa 157 ||||||||||||||||||||| Sbjct: 491374 ccctgtttgaaccaaaggaaa 491354
>dbj|AP004473.1| Lotus japonicus genomic DNA, chromosome 4, clone:LjT10J15, TM0007, complete sequence Length = 92741 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 82 gaaaatgtgttgtaatatcaa 102 ||||||||||||||||||||| Sbjct: 53126 gaaaatgtgttgtaatatcaa 53146
>gb|AC164566.3| Mus musculus BAC clone RP23-94P17 from chromosome 16, complete sequence Length = 203314 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 97 tatcaaagataatgaaaagga 117 ||||||||||||||||||||| Sbjct: 57818 tatcaaagataatgaaaagga 57798
>dbj|AB019438.1| Homo sapiens DNA for immunoglobulin heavy-chain variable region, complete sequence, 2 of 5 Length = 200000 Score = 42.1 bits (21), Expect = 1.4 Identities = 27/29 (93%) Strand = Plus / Minus Query: 40 atttgtacatacatgattaatagtccaac 68 |||||||||||| | |||||||||||||| Sbjct: 85998 atttgtacatacttaattaatagtccaac 85970
>gb|AC108759.2| Oryza sativa (Japonica cultiva-group) chromosome 9 BAC clone OSJNBa0072P02, complete sequence Length = 157488 Score = 40.1 bits (20), Expect = 5.4 Identities = 32/36 (88%) Strand = Plus / Minus Query: 368 tcgatgccctcctcgaaggcgacgcccatgcccatg 403 |||| |||||||||||| | ||||||||||||||| Sbjct: 89240 tcgacgccctcctcgaacaccacgcccatgcccatg 89205
>gb|AC116728.12| Mus musculus chromosome 3, clone RP23-345H12, complete sequence Length = 192916 Score = 40.1 bits (20), Expect = 5.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 87 tgtgttgtaatatcaaagat 106 |||||||||||||||||||| Sbjct: 153703 tgtgttgtaatatcaaagat 153684
>gb|AC006334.3| Homo sapiens BAC clone RP11-421B22 from 7, complete sequence Length = 141899 Score = 40.1 bits (20), Expect = 5.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 1 atattaatcttgtatcttgc 20 |||||||||||||||||||| Sbjct: 37382 atattaatcttgtatcttgc 37363
>gb|AC018464.9| Homo sapiens BAC clone RP11-328M22 from 7, complete sequence Length = 155862 Score = 40.1 bits (20), Expect = 5.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 204 aaataaataattgaatgtga 223 |||||||||||||||||||| Sbjct: 114817 aaataaataattgaatgtga 114836
>gb|CP000316.1| Polaromonas sp. JS666, complete genome Length = 5200264 Score = 40.1 bits (20), Expect = 5.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 361 gacgcgctcgatgccctcct 380 |||||||||||||||||||| Sbjct: 1371853 gacgcgctcgatgccctcct 1371872
>emb|AL162595.17| Human DNA sequence from clone RP5-1061H20 on chromosome 1 Contains three novel genes, a novel pseudogene, the 5' end of the RAB4A gene for RAB4A, member RAS oncogene family and a CpG island, complete sequence Length = 115018 Score = 40.1 bits (20), Expect = 5.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 1 atattaatcttgtatcttgc 20 |||||||||||||||||||| Sbjct: 47301 atattaatcttgtatcttgc 47282
>emb|AL139425.8| Human DNA sequence from clone RP4-788L13 on chromosome 1p21.1-21.3 Contains the 3' end of gene for plasticity related gene 1 (PRG), complete sequence Length = 68858 Score = 40.1 bits (20), Expect = 5.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 223 aagaatgaatgaaattatgt 242 |||||||||||||||||||| Sbjct: 7286 aagaatgaatgaaattatgt 7267
>gb|AC116447.10| Homo sapiens chromosome 18, clone RP11-54G14, complete sequence Length = 105108 Score = 40.1 bits (20), Expect = 5.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 1 atattaatcttgtatcttgc 20 |||||||||||||||||||| Sbjct: 69755 atattaatcttgtatcttgc 69774
>emb|AL136459.12| Human DNA sequence from clone RP5-888L3 on chromosome 1, complete sequence Length = 19838 Score = 40.1 bits (20), Expect = 5.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 156 aaaatataaggaattagagg 175 |||||||||||||||||||| Sbjct: 16199 aaaatataaggaattagagg 16180
>emb|CR848038.1| Chlamydophila abortus strain S26/3, complete genome Length = 1144377 Score = 40.1 bits (20), Expect = 5.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 57 taatagtccaacaatttgct 76 |||||||||||||||||||| Sbjct: 774821 taatagtccaacaatttgct 774840
>emb|CR936947.2| Medicago truncatula chromosome 5 clone mte1-85h10, COMPLETE SEQUENCE Length = 136310 Score = 40.1 bits (20), Expect = 5.4 Identities = 23/24 (95%) Strand = Plus / Minus Query: 142 tttgaaccaaaggaaaaatataag 165 |||||||||||| ||||||||||| Sbjct: 73404 tttgaaccaaagaaaaaatataag 73381
>emb|BX005227.12| Zebrafish DNA sequence from clone CH211-286C23 in linkage group 21, complete sequence Length = 187709 Score = 40.1 bits (20), Expect = 5.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 226 aatgaatgaaattatgtgag 245 |||||||||||||||||||| Sbjct: 138253 aatgaatgaaattatgtgag 138234
>emb|BX649396.3| Zebrafish DNA sequence from clone DKEY-177E22 in linkage group 9, complete sequence Length = 46907 Score = 40.1 bits (20), Expect = 5.4 Identities = 26/28 (92%) Strand = Plus / Plus Query: 209 aataattgaatgtgaagaatgaatgaaa 236 |||||||||||| |||||||||||||| Sbjct: 29644 aataattgaatgaaaagaatgaatgaaa 29671
>gb|AC010118.8| Drosophila melanogaster 3L BAC RP98-10D15 (Roswell Park Cancer Institute Drosophila BAC Library) complete sequence Length = 171868 Score = 40.1 bits (20), Expect = 5.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 140 tgtttgaaccaaaggaaaaa 159 |||||||||||||||||||| Sbjct: 99513 tgtttgaaccaaaggaaaaa 99494
>gb|AC104798.4| Homo sapiens BAC clone RP11-328N8 from 4, complete sequence Length = 132337 Score = 40.1 bits (20), Expect = 5.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 1 atattaatcttgtatcttgc 20 |||||||||||||||||||| Sbjct: 31402 atattaatcttgtatcttgc 31421
>gb|AC007754.4|AC007754 Drosophila melanogaster, chromosome 3R, region 87E-87E, BAC clone BACR05K08, complete sequence Length = 188967 Score = 40.1 bits (20), Expect = 5.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 271 aatattttctcgcacgtttt 290 |||||||||||||||||||| Sbjct: 183265 aatattttctcgcacgtttt 183246
>gb|CP000248.1| Novosphingobium aromaticivorans DSM 12444, complete genome Length = 3561584 Score = 40.1 bits (20), Expect = 5.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 356 ttgccgacgcgctcgatgcc 375 |||||||||||||||||||| Sbjct: 2630709 ttgccgacgcgctcgatgcc 2630690
>gb|AC008360.3|AC008360 Drosophila melanogaster, chromosome 3R, region 87E-87F, BAC clone BACR06H18, complete sequence Length = 194672 Score = 40.1 bits (20), Expect = 5.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 271 aatattttctcgcacgtttt 290 |||||||||||||||||||| Sbjct: 64986 aatattttctcgcacgtttt 64967
>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete sequence Length = 27566993 Score = 40.1 bits (20), Expect = 5.4 Identities = 23/24 (95%) Strand = Plus / Minus Query: 140 tgtttgaaccaaaggaaaaatata 163 ||||||||||| |||||||||||| Sbjct: 15463389 tgtttgaaccataggaaaaatata 15463366
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete sequence Length = 43261740 Score = 40.1 bits (20), Expect = 5.4 Identities = 26/28 (92%) Strand = Plus / Minus Query: 132 ttaggccctgtttgaaccaaaggaaaaa 159 ||||||||| |||||| ||||||||||| Sbjct: 9373669 ttaggccctctttgaatcaaaggaaaaa 9373642
>gb|DQ017268.1| Bombyx mori densovirus 3 isolate VD1, complete genome Length = 6543 Score = 40.1 bits (20), Expect = 5.4 Identities = 23/24 (95%) Strand = Plus / Minus Query: 96 atatcaaagataatgaaaaggata 119 |||| ||||||||||||||||||| Sbjct: 5377 atataaaagataatgaaaaggata 5354
>gb|AC026201.3|AC026201 Homo sapiens chromosome 11 clone RP11-546N8 map 11q, complete sequence Length = 202218 Score = 40.1 bits (20), Expect = 5.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 35 taattatttgtacatacatg 54 |||||||||||||||||||| Sbjct: 86968 taattatttgtacatacatg 86987
>gb|AC011815.7|AC011815 Homo sapiens chromosome , clone RP11-158H5, complete sequence Length = 156244 Score = 40.1 bits (20), Expect = 5.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 1 atattaatcttgtatcttgc 20 |||||||||||||||||||| Sbjct: 147857 atattaatcttgtatcttgc 147838
>dbj|AP001081.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, clone:P0693B08 Length = 140812 Score = 40.1 bits (20), Expect = 5.4 Identities = 26/28 (92%) Strand = Plus / Minus Query: 132 ttaggccctgtttgaaccaaaggaaaaa 159 ||||||||| |||||| ||||||||||| Sbjct: 43996 ttaggccctctttgaatcaaaggaaaaa 43969
>dbj|AP001073.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0667A10 Length = 152237 Score = 40.1 bits (20), Expect = 5.4 Identities = 26/28 (92%) Strand = Plus / Minus Query: 132 ttaggccctgtttgaaccaaaggaaaaa 159 ||||||||| |||||| ||||||||||| Sbjct: 150263 ttaggccctctttgaatcaaaggaaaaa 150236
>dbj|BA000011.4| Thermoplasma volcanium GSS1 DNA, complete genome Length = 1584804 Score = 40.1 bits (20), Expect = 5.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 152 aggaaaaatataaggaatta 171 |||||||||||||||||||| Sbjct: 1278086 aggaaaaatataaggaatta 1278105
>dbj|BA000035.2| Corynebacterium efficiens YS-314 DNA, complete genome Length = 3147090 Score = 40.1 bits (20), Expect = 5.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 369 cgatgccctcctcgaaggcg 388 |||||||||||||||||||| Sbjct: 2260096 cgatgccctcctcgaaggcg 2260115
>dbj|AK110881.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-172-G09, full insert sequence Length = 2047 Score = 40.1 bits (20), Expect = 5.4 Identities = 32/36 (88%) Strand = Plus / Minus Query: 368 tcgatgccctcctcgaaggcgacgcccatgcccatg 403 |||| |||||||||||| | ||||||||||||||| Sbjct: 1788 tcgacgccctcctcgaacaccacgcccatgcccatg 1753
>emb|CR394535.19| Zebrafish DNA sequence from clone CH211-198P19 in linkage group 3, complete sequence Length = 190173 Score = 40.1 bits (20), Expect = 5.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 201 cgaaaataaataattgaatg 220 |||||||||||||||||||| Sbjct: 153555 cgaaaataaataattgaatg 153574
>emb|AL646052.1| Ralstonia solanacearum GMI1000 chromosome complete sequence Length = 3716413 Score = 40.1 bits (20), Expect = 5.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 323 ttgctgacgcagcgcgtgat 342 |||||||||||||||||||| Sbjct: 474993 ttgctgacgcagcgcgtgat 475012
>gb|AE003699.3| Drosophila melanogaster chromosome 3R, section 37 of 118 of the complete sequence Length = 208424 Score = 40.1 bits (20), Expect = 5.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 271 aatattttctcgcacgtttt 290 |||||||||||||||||||| Sbjct: 199851 aatattttctcgcacgtttt 199832
>gb|AE003472.1| Drosophila melanogaster chromosome 3L, section 6 of 83 of the complete sequence Length = 303191 Score = 40.1 bits (20), Expect = 5.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 140 tgtttgaaccaaaggaaaaa 159 |||||||||||||||||||| Sbjct: 289334 tgtttgaaccaaaggaaaaa 289315
>dbj|AP006214.1| Homo sapiens genomic DNA, chromosome 11, clone:RP11-176I21, complete sequence Length = 62000 Score = 40.1 bits (20), Expect = 5.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 35 taattatttgtacatacatg 54 |||||||||||||||||||| Sbjct: 56643 taattatttgtacatacatg 56624
>gb|AC005557.1|AC005557 Drosophila melanogaster, chromosome 3L, region 62A10-62B5, P1 clones DS02777, DS03222, DS02345, and DS04808, complete sequence Length = 257867 Score = 40.1 bits (20), Expect = 5.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 140 tgtttgaaccaaaggaaaaa 159 |||||||||||||||||||| Sbjct: 212500 tgtttgaaccaaaggaaaaa 212481
>gb|AE016958.1| Mycobacterium avium subsp. paratuberculosis str. k10, complete genome Length = 4829781 Score = 40.1 bits (20), Expect = 5.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 369 cgatgccctcctcgaaggcg 388 |||||||||||||||||||| Sbjct: 2172543 cgatgccctcctcgaaggcg 2172562
>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence Length = 27492551 Score = 40.1 bits (20), Expect = 5.4 Identities = 23/24 (95%) Strand = Plus / Minus Query: 140 tgtttgaaccaaaggaaaaatata 163 ||||||||||| |||||||||||| Sbjct: 15417672 tgtttgaaccataggaaaaatata 15417649
>emb|AL713911.3|CNS07YQC Oryza sativa chromosome 12, . BAC OSJNBb0066P16 of library OSJNBb from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 126680 Score = 40.1 bits (20), Expect = 5.4 Identities = 23/24 (95%) Strand = Plus / Plus Query: 140 tgtttgaaccaaaggaaaaatata 163 ||||||||||| |||||||||||| Sbjct: 39098 tgtttgaaccataggaaaaatata 39121
>emb|AL844225.9| Mouse DNA sequence from clone RP23-119M24 on chromosome 2, complete sequence Length = 137220 Score = 40.1 bits (20), Expect = 5.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 35 taattatttgtacatacatg 54 |||||||||||||||||||| Sbjct: 19808 taattatttgtacatacatg 19827
>gb|DQ138935.1| Drosophila yakuba strain Tai18 CG12105 gene, partial cds Length = 4278 Score = 40.1 bits (20), Expect = 5.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 106 taatgaaaaggatatgagca 125 |||||||||||||||||||| Sbjct: 2019 taatgaaaaggatatgagca 2038
>dbj|AB033596.1| Parvo-like virus orf4, orf3, orf2, orf1 genes, complete cds Length = 6542 Score = 40.1 bits (20), Expect = 5.4 Identities = 23/24 (95%) Strand = Plus / Minus Query: 96 atatcaaagataatgaaaaggata 119 |||| ||||||||||||||||||| Sbjct: 5376 atataaaagataatgaaaaggata 5353 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 5,219,148 Number of Sequences: 3902068 Number of extensions: 5219148 Number of successful extensions: 110275 Number of sequences better than 10.0: 70 Number of HSP's better than 10.0 without gapping: 71 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 109557 Number of HSP's gapped (non-prelim): 718 length of query: 403 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 381 effective length of database: 17,147,199,772 effective search space: 6533083113132 effective search space used: 6533083113132 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
