Clone Name | rbart60b04 |
---|---|
Clone Library Name | barley_pub |
>emb|AL606636.4|OSJN00075 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0036B21, complete sequence Length = 138969 Score = 244 bits (123), Expect = 2e-61 Identities = 192/215 (89%) Strand = Plus / Minus Query: 176 agctagaaggagaacttgaggagcatgtcgtgcttgtacacctggccgggcctcaccgtg 235 ||||||||||||||||||| | |||||||||| ||||||||||||||||||| ||||| Sbjct: 88861 agctagaaggagaacttgaaggccatgtcgtgcctgtacacctggccgggcctgaccgtc 88802 Query: 236 accgacgggaactcggggtggttcacggcgtccgggtacgcctgcgtctcaaggcaaaac 295 | || |||||||| |||||||||||||||||| |||| |||||||||| ||||| ||| Sbjct: 88801 atggaggggaactccgggtggttcacggcgtccacgtacccctgcgtctccaggcagaac 88742 Query: 296 ccgccgtactgctcgtacaccttgccgcccttgcccttggtgtggttgagaaagttgccg 355 ||||||||||||| ||||||||||||||||||||||||| ||| ||| || |||||||| Sbjct: 88741 ccgccgtactgctggtacaccttgccgcccttgcccttgatgttgttcagccagttgccg 88682 Query: 356 gtgtagagctgcatggccggctggttggcccacag 390 ||||| |||||||||||||||||||| |||||||| Sbjct: 88681 gtgtacagctgcatggccggctggttcgcccacag 88647 Score = 127 bits (64), Expect = 3e-26 Identities = 133/156 (85%) Strand = Plus / Minus Query: 178 ctagaaggagaacttgaggagcatgtcgtgcttgtacacctggccgggcctcaccgtgac 237 |||||| ||||||||| | ||| ||||||||||||||||| ||||||||||| | || Sbjct: 81940 ctagaacgagaacttgtacaccatctcgtgcttgtacacctgtccgggcctcacgatcac 81881 Query: 238 cgacgggaactcggggtggttcacggcgtccgggtacgcctgcgtctcaaggcaaaaccc 297 ||||||||| | |||||||||||||||||| ||| || |||||||||| ||||| | | | Sbjct: 81880 cgacgggaagttggggtggttcacggcgtcggggaacccctgcgtctccaggcacagcgc 81821 Query: 298 gccgtactgctcgtacaccttgccgcccttgccctt 333 |||||||||| ||||| |||| |||||||| ||||| Sbjct: 81820 gccgtactgcccgtacgccttcccgcccttcccctt 81785
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete sequence Length = 35498469 Score = 244 bits (123), Expect = 2e-61 Identities = 192/215 (89%) Strand = Plus / Minus Query: 176 agctagaaggagaacttgaggagcatgtcgtgcttgtacacctggccgggcctcaccgtg 235 ||||||||||||||||||| | |||||||||| ||||||||||||||||||| ||||| Sbjct: 22880086 agctagaaggagaacttgaaggccatgtcgtgcctgtacacctggccgggcctgaccgtc 22880027 Query: 236 accgacgggaactcggggtggttcacggcgtccgggtacgcctgcgtctcaaggcaaaac 295 | || |||||||| |||||||||||||||||| |||| |||||||||| ||||| ||| Sbjct: 22880026 atggaggggaactccgggtggttcacggcgtccacgtacccctgcgtctccaggcagaac 22879967 Query: 296 ccgccgtactgctcgtacaccttgccgcccttgcccttggtgtggttgagaaagttgccg 355 ||||||||||||| ||||||||||||||||||||||||| ||| ||| || |||||||| Sbjct: 22879966 ccgccgtactgctggtacaccttgccgcccttgcccttgatgttgttcagccagttgccg 22879907 Query: 356 gtgtagagctgcatggccggctggttggcccacag 390 ||||| |||||||||||||||||||| |||||||| Sbjct: 22879906 gtgtacagctgcatggccggctggttcgcccacag 22879872 Score = 127 bits (64), Expect = 3e-26 Identities = 133/156 (85%) Strand = Plus / Minus Query: 178 ctagaaggagaacttgaggagcatgtcgtgcttgtacacctggccgggcctcaccgtgac 237 |||||| ||||||||| | ||| ||||||||||||||||| ||||||||||| | || Sbjct: 22873165 ctagaacgagaacttgtacaccatctcgtgcttgtacacctgtccgggcctcacgatcac 22873106 Query: 238 cgacgggaactcggggtggttcacggcgtccgggtacgcctgcgtctcaaggcaaaaccc 297 ||||||||| | |||||||||||||||||| ||| || |||||||||| ||||| | | | Sbjct: 22873105 cgacgggaagttggggtggttcacggcgtcggggaacccctgcgtctccaggcacagcgc 22873046 Query: 298 gccgtactgctcgtacaccttgccgcccttgccctt 333 |||||||||| ||||| |||| |||||||| ||||| Sbjct: 22873045 gccgtactgcccgtacgccttcccgcccttcccctt 22873010
>dbj|AK106058.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-206-F10, full insert sequence Length = 1343 Score = 244 bits (123), Expect = 2e-61 Identities = 192/215 (89%) Strand = Plus / Minus Query: 176 agctagaaggagaacttgaggagcatgtcgtgcttgtacacctggccgggcctcaccgtg 235 ||||||||||||||||||| | |||||||||| ||||||||||||||||||| ||||| Sbjct: 1154 agctagaaggagaacttgaaggccatgtcgtgcctgtacacctggccgggcctgaccgtc 1095 Query: 236 accgacgggaactcggggtggttcacggcgtccgggtacgcctgcgtctcaaggcaaaac 295 | || |||||||| |||||||||||||||||| |||| |||||||||| ||||| ||| Sbjct: 1094 atggaggggaactccgggtggttcacggcgtccacgtacccctgcgtctccaggcagaac 1035 Query: 296 ccgccgtactgctcgtacaccttgccgcccttgcccttggtgtggttgagaaagttgccg 355 ||||||||||||| ||||||||||||||||||||||||| ||| ||| || |||||||| Sbjct: 1034 ccgccgtactgctggtacaccttgccgcccttgcccttgatgttgttcagccagttgccg 975 Query: 356 gtgtagagctgcatggccggctggttggcccacag 390 ||||| |||||||||||||||||||| |||||||| Sbjct: 974 gtgtacagctgcatggccggctggttcgcccacag 940
>ref|XM_472739.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 1092 Score = 240 bits (121), Expect = 3e-60 Identities = 190/213 (89%) Strand = Plus / Minus Query: 178 ctagaaggagaacttgaggagcatgtcgtgcttgtacacctggccgggcctcaccgtgac 237 ||||||||||||||||| | |||||||||| ||||||||||||||||||| ||||| | Sbjct: 1092 ctagaaggagaacttgaaggccatgtcgtgcctgtacacctggccgggcctgaccgtcat 1033 Query: 238 cgacgggaactcggggtggttcacggcgtccgggtacgcctgcgtctcaaggcaaaaccc 297 || |||||||| |||||||||||||||||| |||| |||||||||| ||||| ||||| Sbjct: 1032 ggaggggaactccgggtggttcacggcgtccacgtacccctgcgtctccaggcagaaccc 973 Query: 298 gccgtactgctcgtacaccttgccgcccttgcccttggtgtggttgagaaagttgccggt 357 ||||||||||| ||||||||||||||||||||||||| ||| ||| || |||||||||| Sbjct: 972 gccgtactgctggtacaccttgccgcccttgcccttgatgttgttcagccagttgccggt 913 Query: 358 gtagagctgcatggccggctggttggcccacag 390 ||| |||||||||||||||||||| |||||||| Sbjct: 912 gtacagctgcatggccggctggttcgcccacag 880
>gb|AY108337.1| Zea mays PCO116943 mRNA sequence Length = 500 Score = 139 bits (70), Expect = 8e-30 Identities = 178/214 (83%) Strand = Plus / Minus Query: 177 gctagaaggagaacttgaggagcatgtcgtgcttgtacacctggccgggcctcaccgtga 236 |||||||||||||||||| | ||||||||||||||||||||| || ||||| || | Sbjct: 328 gctagaaggagaacttgaacaccatgtcgtgcttgtacacctgccccggcctgacgatct 269 Query: 237 ccgacgggaactcggggtggttcacggcgtccgggtacgcctgcgtctcaaggcaaaacc 296 || ||||| | ||||||||| |||||||||||| || |||||||||| ||||| | | Sbjct: 268 gggaggggaaattggggtggttgacggcgtccgggaacccctgcgtctcgaggcacagcg 209 Query: 297 cgccgtactgctcgtacaccttgccgcccttgcccttggtgtggttgagaaagttgccgg 356 |||||||||||| |||||||||||||||||| |||||| || | ||| |||||||| | Sbjct: 208 cgccgtactgctggtacaccttgccgcccttccccttgacgtcctggaggaagttgcccg 149 Query: 357 tgtagagctgcatggccggctggttggcccacag 390 |||||| ||||| | ||||||||||||||||| Sbjct: 148 tgtagaactgcaccccaggctggttggcccacag 115
>ref|XM_472738.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 1206 Score = 127 bits (64), Expect = 3e-26 Identities = 133/156 (85%) Strand = Plus / Minus Query: 178 ctagaaggagaacttgaggagcatgtcgtgcttgtacacctggccgggcctcaccgtgac 237 |||||| ||||||||| | ||| ||||||||||||||||| ||||||||||| | || Sbjct: 1206 ctagaacgagaacttgtacaccatctcgtgcttgtacacctgtccgggcctcacgatcac 1147 Query: 238 cgacgggaactcggggtggttcacggcgtccgggtacgcctgcgtctcaaggcaaaaccc 297 ||||||||| | |||||||||||||||||| ||| || |||||||||| ||||| | | | Sbjct: 1146 cgacgggaagttggggtggttcacggcgtcggggaacccctgcgtctccaggcacagcgc 1087 Query: 298 gccgtactgctcgtacaccttgccgcccttgccctt 333 |||||||||| ||||| |||| |||||||| ||||| Sbjct: 1086 gccgtactgcccgtacgccttcccgcccttcccctt 1051
>dbj|AK104444.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-210-H06, full insert sequence Length = 1285 Score = 127 bits (64), Expect = 3e-26 Identities = 133/156 (85%) Strand = Plus / Minus Query: 178 ctagaaggagaacttgaggagcatgtcgtgcttgtacacctggccgggcctcaccgtgac 237 |||||| ||||||||| | ||| ||||||||||||||||| ||||||||||| | || Sbjct: 1172 ctagaacgagaacttgtacaccatatcgtgcttgtacacctgtccgggcctcacgatcac 1113 Query: 238 cgacgggaactcggggtggttcacggcgtccgggtacgcctgcgtctcaaggcaaaaccc 297 ||||||||| | |||||||||||||||||| ||| || |||||||||| ||||| | | | Sbjct: 1112 cgacgggaagttggggtggttcacggcgtcggggaacccctgcgtctccaggcacagcgc 1053 Query: 298 gccgtactgctcgtacaccttgccgcccttgccctt 333 |||||||||| ||||| |||| |||||||| ||||| Sbjct: 1052 gccgtactgcccgtacgccttcccgcccttcccctt 1017
>dbj|AK059553.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-029-G05, full insert sequence Length = 1329 Score = 127 bits (64), Expect = 3e-26 Identities = 133/156 (85%) Strand = Plus / Minus Query: 178 ctagaaggagaacttgaggagcatgtcgtgcttgtacacctggccgggcctcaccgtgac 237 |||||| ||||||||| | ||| ||||||||||||||||| ||||||||||| | || Sbjct: 1196 ctagaacgagaacttgtacaccatctcgtgcttgtacacctgtccgggcctcacgatcac 1137 Query: 238 cgacgggaactcggggtggttcacggcgtccgggtacgcctgcgtctcaaggcaaaaccc 297 ||||||||| | |||||||||||||||||| ||| || |||||||||| ||||| | | | Sbjct: 1136 cgacgggaagttggggtggttcacggcgtcggggaacccctgcgtctccaggcacagcgc 1077 Query: 298 gccgtactgctcgtacaccttgccgcccttgccctt 333 |||||||||| ||||| |||| |||||||| ||||| Sbjct: 1076 gccgtactgcccgtacgccttcccgcccttcccctt 1041
>ref|XM_466392.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1299 Score = 56.0 bits (28), Expect = 9e-05 Identities = 67/80 (83%) Strand = Plus / Minus Query: 251 gggtggttcacggcgtccgggtacgcctgcgtctcaaggcaaaacccgccgtactgctcg 310 ||||||||||||||||| ||| || |||||||||| | ||| | | |||||||| | || Sbjct: 1096 gggtggttcacggcgtcggggaacccctgcgtctccaagcacagcgcgccgtaccggccg 1037 Query: 311 tacaccttgccgcccttgcc 330 |||||| | ||||||||||| Sbjct: 1036 tacaccctcccgcccttgcc 1017
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete sequence Length = 35954743 Score = 56.0 bits (28), Expect = 9e-05 Identities = 67/80 (83%) Strand = Plus / Minus Query: 251 gggtggttcacggcgtccgggtacgcctgcgtctcaaggcaaaacccgccgtactgctcg 310 ||||||||||||||||| ||| || |||||||||| | ||| | | |||||||| | || Sbjct: 22124192 gggtggttcacggcgtcggggaacccctgcgtctccaagcacagcgcgccgtaccggccg 22124133 Query: 311 tacaccttgccgcccttgcc 330 |||||| | ||||||||||| Sbjct: 22124132 tacaccctcccgcccttgcc 22124113
>dbj|AP005116.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC clone:P0703B01 Length = 137445 Score = 56.0 bits (28), Expect = 9e-05 Identities = 67/80 (83%) Strand = Plus / Minus Query: 251 gggtggttcacggcgtccgggtacgcctgcgtctcaaggcaaaacccgccgtactgctcg 310 ||||||||||||||||| ||| || |||||||||| | ||| | | |||||||| | || Sbjct: 98091 gggtggttcacggcgtcggggaacccctgcgtctccaagcacagcgcgccgtaccggccg 98032 Query: 311 tacaccttgccgcccttgcc 330 |||||| | ||||||||||| Sbjct: 98031 tacaccctcccgcccttgcc 98012
>dbj|AP006070.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:B1342F01 Length = 153287 Score = 56.0 bits (28), Expect = 9e-05 Identities = 67/80 (83%) Strand = Plus / Minus Query: 251 gggtggttcacggcgtccgggtacgcctgcgtctcaaggcaaaacccgccgtactgctcg 310 ||||||||||||||||| ||| || |||||||||| | ||| | | |||||||| | || Sbjct: 20036 gggtggttcacggcgtcggggaacccctgcgtctccaagcacagcgcgccgtaccggccg 19977 Query: 311 tacaccttgccgcccttgcc 330 |||||| | ||||||||||| Sbjct: 19976 tacaccctcccgcccttgcc 19957
>dbj|AK109600.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-137-E04, full insert sequence Length = 1324 Score = 56.0 bits (28), Expect = 9e-05 Identities = 67/80 (83%) Strand = Plus / Minus Query: 251 gggtggttcacggcgtccgggtacgcctgcgtctcaaggcaaaacccgccgtactgctcg 310 ||||||||||||||||| ||| || |||||||||| | ||| | | |||||||| | || Sbjct: 1096 gggtggttcacggcgtcggggaacccctgcgtctccaagcacagcgcgccgtaccggccg 1037 Query: 311 tacaccttgccgcccttgcc 330 |||||| | ||||||||||| Sbjct: 1036 tacaccctcccgcccttgcc 1017
>emb|BX248517.10| Zebrafish DNA sequence from clone DKEY-30O16 in linkage group 16, complete sequence Length = 201353 Score = 48.1 bits (24), Expect = 0.021 Identities = 27/28 (96%) Strand = Plus / Minus Query: 14 atatgaatttatttttcaaataccgtat 41 ||||||||||||||||||||||| |||| Sbjct: 178061 atatgaatttatttttcaaatactgtat 178034
>gb|CP000248.1| Novosphingobium aromaticivorans DSM 12444, complete genome Length = 3561584 Score = 46.1 bits (23), Expect = 0.084 Identities = 29/31 (93%) Strand = Plus / Minus Query: 347 aagttgccggtgtagagctgcatggccggct 377 |||||||||||||||||||||| | |||||| Sbjct: 874546 aagttgccggtgtagagctgcacgcccggct 874516
>ref|XM_385445.1| Gibberella zeae PH-1 chromosome 3 hypothetical protein (FG05269.1) partial mRNA Length = 3132 Score = 44.1 bits (22), Expect = 0.33 Identities = 22/22 (100%) Strand = Plus / Minus Query: 313 caccttgccgcccttgcccttg 334 |||||||||||||||||||||| Sbjct: 1935 caccttgccgcccttgcccttg 1914
>gb|CP000148.1| Geobacter metallireducens GS-15, complete genome Length = 3997420 Score = 42.1 bits (21), Expect = 1.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 350 ttgccggtgtagagctgcatg 370 ||||||||||||||||||||| Sbjct: 231723 ttgccggtgtagagctgcatg 231703
>gb|AC025277.10| Homo sapiens chromosome 16 clone CTD-3229J4, complete sequence Length = 189032 Score = 42.1 bits (21), Expect = 1.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 12 acatatgaatttatttttcaa 32 ||||||||||||||||||||| Sbjct: 46203 acatatgaatttatttttcaa 46183
>emb|AL606508.12| Mouse DNA sequence from clone RP23-180B9 on chromosome 11 Contains the 3' end of a novel gene and a CpG island, complete sequence Length = 189315 Score = 42.1 bits (21), Expect = 1.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 13 catatgaatttatttttcaaa 33 ||||||||||||||||||||| Sbjct: 115868 catatgaatttatttttcaaa 115888
>gb|AY122103.1| Drosophila melanogaster GH10091 full insert cDNA Length = 1348 Score = 42.1 bits (21), Expect = 1.3 Identities = 30/33 (90%) Strand = Plus / Minus Query: 253 gtggttcacggcgtccgggtacgcctgcgtctc 285 |||||||| ||||||||||||| ||||||||| Sbjct: 1108 gtggttcatggcgtccgggtacttctgcgtctc 1076
>ref|NM_168931.1| Drosophila melanogaster CG32445-RA (CG32445), mRNA Length = 1329 Score = 42.1 bits (21), Expect = 1.3 Identities = 30/33 (90%) Strand = Plus / Minus Query: 253 gtggttcacggcgtccgggtacgcctgcgtctc 285 |||||||| ||||||||||||| ||||||||| Sbjct: 1108 gtggttcatggcgtccgggtacttctgcgtctc 1076
>gb|AC010701.3| Drosophila melanogaster 3L BAC RP98-26P10 (Roswell Park Cancer Institute Drosophila BAC Library) complete sequence Length = 174920 Score = 42.1 bits (21), Expect = 1.3 Identities = 30/33 (90%) Strand = Plus / Plus Query: 253 gtggttcacggcgtccgggtacgcctgcgtctc 285 |||||||| ||||||||||||| ||||||||| Sbjct: 29942 gtggttcatggcgtccgggtacttctgcgtctc 29974
>gb|AE003595.3| Drosophila melanogaster chromosome 3L, section 76 of 83 of the complete sequence Length = 294272 Score = 42.1 bits (21), Expect = 1.3 Identities = 30/33 (90%) Strand = Plus / Minus Query: 253 gtggttcacggcgtccgggtacgcctgcgtctc 285 |||||||| ||||||||||||| ||||||||| Sbjct: 59998 gtggttcatggcgtccgggtacttctgcgtctc 59966
>emb|AL807247.10| Mouse DNA sequence from clone RP23-178D3 on chromosome 4, complete sequence Length = 184686 Score = 42.1 bits (21), Expect = 1.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 17 tgaatttatttttcaaatacc 37 ||||||||||||||||||||| Sbjct: 40076 tgaatttatttttcaaatacc 40056
>gb|CP000031.1| Silicibacter pomeroyi DSS-3, complete genome Length = 4109442 Score = 40.1 bits (20), Expect = 5.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 315 ccttgccgcccttgcccttg 334 |||||||||||||||||||| Sbjct: 1226600 ccttgccgcccttgcccttg 1226581
>gb|AC102418.9| Mus musculus chromosome 3, clone RP24-499L10, complete sequence Length = 208274 Score = 40.1 bits (20), Expect = 5.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 10 aaacatatgaatttattttt 29 |||||||||||||||||||| Sbjct: 117563 aaacatatgaatttattttt 117544
>ref|XM_470761.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1375 Score = 40.1 bits (20), Expect = 5.2 Identities = 29/32 (90%) Strand = Plus / Minus Query: 260 acggcgtccgggtacgcctgcgtctcaaggca 291 |||||||||||||| |||||||||| ||||| Sbjct: 1090 acggcgtccgggtagtcctgcgtctcgaggca 1059
>gb|BT016428.1| Zea mays clone Contig261 mRNA sequence Length = 1373 Score = 40.1 bits (20), Expect = 5.2 Identities = 91/112 (81%), Gaps = 2/112 (1%) Strand = Plus / Minus Query: 181 gaaggagaacttgaggagcatgtcgtgcttgtacacctggccgggcctcaccgtgaccga 240 |||||||||||| | ||||||||| || | ||||||| ||| |||||||| | ||| Sbjct: 1115 gaaggagaacttaaagagcatgtcatggctatacaccttgcccggcctcacgatctgcga 1056 Query: 241 cgggaa-ctcggggtggttcacggcgtccgggtacgcctgcgtctcaaggca 291 |||||| ||| |||||||| ||||| || ||| || |||||||||| ||||| Sbjct: 1055 cgggaagctc-gggtggttgacggcatcggggaacccctgcgtctcgaggca 1005
>gb|CP000143.1| Rhodobacter sphaeroides 2.4.1 chromosome 1, complete genome Length = 3188609 Score = 40.1 bits (20), Expect = 5.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 316 cttgccgcccttgcccttgg 335 |||||||||||||||||||| Sbjct: 1055116 cttgccgcccttgcccttgg 1055097
>gb|AC131695.4| Mus musculus BAC clone RP23-396F8 from chromosome 6, complete sequence Length = 199679 Score = 40.1 bits (20), Expect = 5.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 17 tgaatttatttttcaaatac 36 |||||||||||||||||||| Sbjct: 16128 tgaatttatttttcaaatac 16147
>gb|CP000125.1| Burkholderia pseudomallei 1710b chromosome II, complete sequence Length = 3181762 Score = 40.1 bits (20), Expect = 5.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 264 cgtccgggtacgcctgcgtc 283 |||||||||||||||||||| Sbjct: 1368112 cgtccgggtacgcctgcgtc 1368093
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 Score = 40.1 bits (20), Expect = 5.2 Identities = 29/32 (90%) Strand = Plus / Plus Query: 260 acggcgtccgggtacgcctgcgtctcaaggca 291 |||||||||||||| |||||||||| ||||| Sbjct: 14939026 acggcgtccgggtagtcctgcgtctcgaggca 14939057
>gb|AC084022.10| Oryza sativa chromosome 3 BAC OSJNBa0011H24 genomic sequence, complete sequence Length = 137184 Score = 40.1 bits (20), Expect = 5.2 Identities = 29/32 (90%) Strand = Plus / Minus Query: 260 acggcgtccgggtacgcctgcgtctcaaggca 291 |||||||||||||| |||||||||| ||||| Sbjct: 103736 acggcgtccgggtagtcctgcgtctcgaggca 103705
>emb|CR318662.11| Zebrafish DNA sequence from clone CH211-213L7 in linkage group 10, complete sequence Length = 200648 Score = 40.1 bits (20), Expect = 5.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 16 atgaatttatttttcaaata 35 |||||||||||||||||||| Sbjct: 63348 atgaatttatttttcaaata 63367
>emb|Z97629.1|HS128N22 Human DNA sequence from clone RP1-128N22 on chromosome Xq25-26.3, complete sequence Length = 98902 Score = 40.1 bits (20), Expect = 5.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 16 atgaatttatttttcaaata 35 |||||||||||||||||||| Sbjct: 9900 atgaatttatttttcaaata 9881
>ref|XM_504921.1| Yarrowia lipolytica CLIB122, YALI0F02827g predicted mRNA Length = 423 Score = 40.1 bits (20), Expect = 5.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 315 ccttgccgcccttgcccttg 334 |||||||||||||||||||| Sbjct: 46 ccttgccgcccttgcccttg 27
>gb|CP000271.1| Burkholderia xenovorans LB400 chromosome 2, complete sequence Length = 3363523 Score = 40.1 bits (20), Expect = 5.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 315 ccttgccgcccttgcccttg 334 |||||||||||||||||||| Sbjct: 146596 ccttgccgcccttgcccttg 146615
>emb|AL356798.18| Human DNA sequence from clone RP11-467B11 on chromosome 9 Contains part of the INVS gene for inversin, complete sequence Length = 118068 Score = 40.1 bits (20), Expect = 5.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 17 tgaatttatttttcaaatac 36 |||||||||||||||||||| Sbjct: 26730 tgaatttatttttcaaatac 26711
>gb|CP000090.1| Ralstonia eutropha JMP134 chromosome 1, complete sequence Length = 3806533 Score = 40.1 bits (20), Expect = 5.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 315 ccttgccgcccttgcccttg 334 |||||||||||||||||||| Sbjct: 2572042 ccttgccgcccttgcccttg 2572023
>emb|AL031075.1|HS789O11 Human DNA sequence from clone RP4-789O11 on chromosome Xq25 Contains part of the ODZ1 gene for odz, odd Oz/ten-m homolog 1(Drosophila), complete sequence Length = 110127 Score = 40.1 bits (20), Expect = 5.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 16 atgaatttatttttcaaata 35 |||||||||||||||||||| Sbjct: 99666 atgaatttatttttcaaata 99647
>emb|BX055567.1|CNS09F1F Single read from an extremity of a full-length cDNA clone made from Anopheles gambiae total adult females. 5-PRIME end of clone FK0AAC34AH12 of strain 6-9 of Anopheles gambiae (African malaria mosquito) Length = 832 Score = 40.1 bits (20), Expect = 5.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 326 ttgcccttggtgtggttgag 345 |||||||||||||||||||| Sbjct: 344 ttgcccttggtgtggttgag 325
>emb|BX040837.1|CNS093O9 Single read from an extremity of a full-length cDNA clone made from Anopheles gambiae total adult females. 5-PRIME end of clone FK0AAC11DE11 of strain 6-9 of Anopheles gambiae (African malaria mosquito) Length = 934 Score = 40.1 bits (20), Expect = 5.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 326 ttgcccttggtgtggttgag 345 |||||||||||||||||||| Sbjct: 330 ttgcccttggtgtggttgag 311
>emb|BX571966.1| Burkholderia pseudomallei strain K96243, chromosome 2, complete sequence Length = 3173005 Score = 40.1 bits (20), Expect = 5.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 264 cgtccgggtacgcctgcgtc 283 |||||||||||||||||||| Sbjct: 2685529 cgtccgggtacgcctgcgtc 2685510
>emb|AL939121.1|SCO939121 Streptomyces coelicolor A3(2) complete genome; segment 18/29 Length = 292100 Score = 40.1 bits (20), Expect = 5.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 223 gggcctcaccgtgaccgacg 242 |||||||||||||||||||| Sbjct: 171854 gggcctcaccgtgaccgacg 171835
>emb|AJ811698.1| Corallococcus coralloides partial gyrB gene for gyrase B, strain DSM 51379 Length = 1180 Score = 40.1 bits (20), Expect = 5.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 303 actgctcgtacaccttgccg 322 |||||||||||||||||||| Sbjct: 114 actgctcgtacaccttgccg 95
>gb|AE005964.1| Caulobacter crescentus CB15 section 290 of 359 of the complete genome Length = 10554 Score = 40.1 bits (20), Expect = 5.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 315 ccttgccgcccttgcccttg 334 |||||||||||||||||||| Sbjct: 469 ccttgccgcccttgcccttg 488
>gb|AF159497.1| Propionibacterium freudenreichii subsp. shermanii esterase and putative acyl-CoA dehydrogenase genes, complete cds Length = 3161 Score = 40.1 bits (20), Expect = 5.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 310 gtacaccttgccgcccttgc 329 |||||||||||||||||||| Sbjct: 1904 gtacaccttgccgcccttgc 1885
>gb|AE011770.1| Xanthomonas axonopodis pv. citri str. 306, section 148 of 469 of the complete genome Length = 10029 Score = 40.1 bits (20), Expect = 5.2 Identities = 23/24 (95%) Strand = Plus / Plus Query: 315 ccttgccgcccttgcccttggtgt 338 |||||| ||||||||||||||||| Sbjct: 9824 ccttgctgcccttgcccttggtgt 9847
>gb|AC072044.9| Homo sapiens 3 BAC RP11-213O23 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 178453 Score = 40.1 bits (20), Expect = 5.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 17 tgaatttatttttcaaatac 36 |||||||||||||||||||| Sbjct: 92422 tgaatttatttttcaaatac 92403
>gb|AC125145.3| Mus musculus BAC clone RP24-347B7 from chromosome 6, complete sequence Length = 186598 Score = 40.1 bits (20), Expect = 5.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 17 tgaatttatttttcaaatac 36 |||||||||||||||||||| Sbjct: 14260 tgaatttatttttcaaatac 14241
>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete sequence Length = 22685906 Score = 40.1 bits (20), Expect = 5.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 13 catatgaatttatttttcaa 32 |||||||||||||||||||| Sbjct: 15114866 catatgaatttatttttcaa 15114885
>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete sequence Length = 30731886 Score = 40.1 bits (20), Expect = 5.2 Identities = 23/24 (95%) Strand = Plus / Plus Query: 12 acatatgaatttatttttcaaata 35 |||||||||| ||||||||||||| Sbjct: 17329026 acatatgaatatatttttcaaata 17329049
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 40.1 bits (20), Expect = 5.2 Identities = 29/32 (90%) Strand = Plus / Plus Query: 260 acggcgtccgggtacgcctgcgtctcaaggca 291 |||||||||||||| |||||||||| ||||| Sbjct: 14933560 acggcgtccgggtagtcctgcgtctcgaggca 14933591
>gb|AC087547.2|AC087547 Oryza sativa (japonica cultivar-group) chromosome 10 clone nbeb0040I11, complete sequence Length = 129420 Score = 40.1 bits (20), Expect = 5.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 13 catatgaatttatttttcaa 32 |||||||||||||||||||| Sbjct: 23479 catatgaatttatttttcaa 23498
>gb|AC154686.2| Mus musculus BAC clone RP24-327C20 from chromosome 14, complete sequence Length = 181382 Score = 40.1 bits (20), Expect = 5.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 17 tgaatttatttttcaaatac 36 |||||||||||||||||||| Sbjct: 23844 tgaatttatttttcaaatac 23825
>gb|AC016970.16| Homo sapiens 3 BAC RP11-40M23 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 166966 Score = 40.1 bits (20), Expect = 5.2 Identities = 23/24 (95%) Strand = Plus / Plus Query: 11 aacatatgaatttatttttcaaat 34 ||||||||||||||||||| |||| Sbjct: 140046 aacatatgaatttattttttaaat 140069
>gb|CP000084.1| Candidatus Pelagibacter ubique HTCC1062, complete genome Length = 1308759 Score = 40.1 bits (20), Expect = 5.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 18 gaatttatttttcaaatacc 37 |||||||||||||||||||| Sbjct: 659504 gaatttatttttcaaatacc 659523
>gb|AC154228.1| Mus musculus BAC clone RP24-143I4 from chromosome 14, complete sequence Length = 164697 Score = 40.1 bits (20), Expect = 5.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 17 tgaatttatttttcaaatac 36 |||||||||||||||||||| Sbjct: 6404 tgaatttatttttcaaatac 6423
>dbj|AP003620.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC clone:P0596H06 Length = 142832 Score = 40.1 bits (20), Expect = 5.2 Identities = 23/24 (95%) Strand = Plus / Plus Query: 12 acatatgaatttatttttcaaata 35 |||||||||| ||||||||||||| Sbjct: 65619 acatatgaatatatttttcaaata 65642
>emb|Z50182.1|RSMGPGN R.sphaeroides mgpS gene and putative open reading frame Length = 3900 Score = 40.1 bits (20), Expect = 5.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 316 cttgccgcccttgcccttgg 335 |||||||||||||||||||| Sbjct: 3751 cttgccgcccttgcccttgg 3732
>ref|XM_310539.2| Anopheles gambiae str. PEST ENSANGP00000017317 (ENSANGG00000014828), partial mRNA Length = 4026 Score = 40.1 bits (20), Expect = 5.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 300 cgtactgctcgtacaccttg 319 |||||||||||||||||||| Sbjct: 3247 cgtactgctcgtacaccttg 3228
>dbj|AK069332.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023010L17, full insert sequence Length = 1375 Score = 40.1 bits (20), Expect = 5.2 Identities = 29/32 (90%) Strand = Plus / Minus Query: 260 acggcgtccgggtacgcctgcgtctcaaggca 291 |||||||||||||| |||||||||| ||||| Sbjct: 1090 acggcgtccgggtagtcctgcgtctcgaggca 1059
>emb|BX004834.13| Zebrafish DNA sequence from clone CH211-42E22 in linkage group 18, complete sequence Length = 188895 Score = 40.1 bits (20), Expect = 5.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 334 ggtgtggttgagaaagttgc 353 |||||||||||||||||||| Sbjct: 23916 ggtgtggttgagaaagttgc 23897
>gb|AY108564.1| Zea mays PCO119136 mRNA sequence Length = 594 Score = 40.1 bits (20), Expect = 5.2 Identities = 91/112 (81%), Gaps = 2/112 (1%) Strand = Plus / Minus Query: 181 gaaggagaacttgaggagcatgtcgtgcttgtacacctggccgggcctcaccgtgaccga 240 |||||||||||| | ||||||||| || | ||||||| ||| |||||||| | ||| Sbjct: 351 gaaggagaacttaaagagcatgtcatggctatacaccttgcccggcctcacgatctgcga 292 Query: 241 cgggaa-ctcggggtggttcacggcgtccgggtacgcctgcgtctcaaggca 291 |||||| ||| |||||||| ||||| || ||| || |||||||||| ||||| Sbjct: 291 cgggaagctc-gggtggttgacggcatcggggaacccctgcgtctcgaggca 241
>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence Length = 22698374 Score = 40.1 bits (20), Expect = 5.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 13 catatgaatttatttttcaa 32 |||||||||||||||||||| Sbjct: 15123107 catatgaatttatttttcaa 15123126
>gb|AC147371.4| Mus musculus BAC clone RP24-247D2 from 6, complete sequence Length = 178577 Score = 40.1 bits (20), Expect = 5.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 17 tgaatttatttttcaaatac 36 |||||||||||||||||||| Sbjct: 6240 tgaatttatttttcaaatac 6221
>emb|CR382132.1| Yarrowia lipolytica chromosome F of strain CLIB122 of Yarrowia lipolytica Length = 4003362 Score = 40.1 bits (20), Expect = 5.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 315 ccttgccgcccttgcccttg 334 |||||||||||||||||||| Sbjct: 407385 ccttgccgcccttgcccttg 407366 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 2,902,248 Number of Sequences: 3902068 Number of extensions: 2902248 Number of successful extensions: 63272 Number of sequences better than 10.0: 67 Number of HSP's better than 10.0 without gapping: 65 Number of HSP's successfully gapped in prelim test: 2 Number of HSP's that attempted gapping in prelim test: 62783 Number of HSP's gapped (non-prelim): 490 length of query: 390 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 368 effective length of database: 17,147,199,772 effective search space: 6310169516096 effective search space used: 6310169516096 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)