>IRX4_HUMAN (P78413) Iroquois-class homeodomain protein IRX-4 (Iroquois|
           homeobox protein 4) (Homeodomain protein IRXA3)
          Length = 519

 Score = 28.5 bits (62), Expect = 4.1
 Identities = 14/30 (46%), Positives = 18/30 (60%), Gaps = 2/30 (6%)
 Frame = +3

Query: 162 ADEREP--KGSRAGGREEEAKEDPCKELSN 245
           ADE+ P  +G    G EEEA+E+P K   N
Sbjct: 215 ADEKRPYAEGEEEEGGEEEAREEPLKSSKN 244

>CBX4_MOUSE (O55187) Chromobox protein homolog 4 (Polycomb 2 homolog) (Pc2)|
           (MPc2)
          Length = 551

 Score = 28.1 bits (61), Expect = 5.4
 Identities = 14/31 (45%), Positives = 18/31 (58%), Gaps = 5/31 (16%)
 Frame = +3

Query: 156 QVADEREPKGSR-----AGGREEEAKEDPCK 233
           + A+ER P+G R     AG  EE+  E PCK
Sbjct: 297 RAAEERHPQGDRTFKKAAGASEEKKAEVPCK 327

>REEP4_PONPY (Q5R598) Receptor expression-enhancing protein 4|
          Length = 257

 Score = 27.7 bits (60), Expect = 7.0
 Identities = 12/25 (48%), Positives = 15/25 (60%)
 Frame = +3

Query: 156 QVADEREPKGSRAGGREEEAKEDPC 230
           QV  +R P G RAGG ++   ED C
Sbjct: 176 QVPHQRPPIGYRAGGLQDSDTEDEC 200

>REEP4_HUMAN (Q9H6H4) Receptor expression-enhancing protein 4|
          Length = 257

 Score = 27.7 bits (60), Expect = 7.0
 Identities = 12/25 (48%), Positives = 15/25 (60%)
 Frame = +3

Query: 156 QVADEREPKGSRAGGREEEAKEDPC 230
           QV+  R P G RAGG ++   ED C
Sbjct: 176 QVSHRRPPIGYRAGGLQDSDTEDEC 200

>NSD1_HUMAN (Q96L73) Histone-lysine N-methyltransferase, H3 lysine-36 and H4|
            lysine-20 specific (EC 2.1.1.43) (H3-K36-HMTase)
            (H4-K20-HMTase) (Nuclear receptor binding SET domain
            containing protein 1) (NR-binding SET domain containing
            protein) (Androgen r
          Length = 2696

 Score = 27.7 bits (60), Expect = 7.0
 Identities = 13/34 (38%), Positives = 20/34 (58%)
 Frame = +3

Query: 153  AQVADEREPKGSRAGGREEEAKEDPCKELSNFLS 254
            A +  +RE  GS  GG E+ +KEDP + + +  S
Sbjct: 1066 AVLQGDRERGGSLRGGAEDPSKEDPLQIMGHLTS 1099


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 32,073,323
Number of Sequences: 219361
Number of extensions: 339978
Number of successful extensions: 650
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 640
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 650
length of database: 80,573,946
effective HSP length: 102
effective length of database: 58,199,124
effective search space used: 1396778976
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)