ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
Japanese | English
更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbart60a12
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1ref|NM_194699.1| Oryza sativa (japonica cultivar-group) unknown ... 96 3e-17
2gb|AC137615.2| Genomic sequence for Oryza sativa, Nipponbare str... 96 3e-17
3gb|AC137607.2| Oryza sativa (japonica cultivar-group) chromosome... 96 3e-17
4gb|AC145127.1| Oryza sativa (japonica cultivar-group) chromosome... 96 3e-17
5gb|AC025098.5| Oryza sativa (japonica cultivar-group) chromosome... 96 3e-17
6dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic D... 96 3e-17
7dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic D... 96 3e-17
8dbj|AK072882.1| Oryza sativa (japonica cultivar-group) cDNA clon... 96 3e-17
9gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome... 96 3e-17
10gb|AY107143.1| Zea mays PCO129484 mRNA sequence 94 1e-16
11dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic D... 80 2e-12
12dbj|AP005778.3| Oryza sativa (japonica cultivar-group) genomic D... 80 2e-12
13dbj|AP005011.3| Oryza sativa (japonica cultivar-group) genomic D... 80 2e-12
14dbj|AP004371.2| Homo sapiens genomic DNA, chromosome 11q, clone:... 44 0.099
15dbj|AK134651.1| Mus musculus adult male medulla oblongata cDNA, ... 42 0.39
16emb|AL731831.17| Mouse DNA sequence from clone RP23-105O13 on ch... 42 0.39
17ref|XM_529101.1| PREDICTED: Pan troglodytes similar to nuclear t... 40 1.5
18gb|BC109888.1| Bos taurus similar to caltractin, mRNA (cDNA clon... 40 1.5
19emb|AL031387.4|HS596C15 Human DNA sequence from clone RP4-596C15... 40 1.5
20dbj|AK023289.1| Homo sapiens cDNA FLJ13227 fis, clone OVARC10000... 40 1.5
21ref|NM_018698.3| Homo sapiens nuclear transport factor 2-like ex... 40 1.5
22gb|DQ011859.1| Sus scrofa centrin 2 mRNA, partial cds 40 1.5
23ref|NM_001038515.1| Bos taurus similar to caltractin (MGC133801)... 40 1.5
24gb|AY610292.1| Sus scrofa clone rcov25b_b12.y1.abd, mRNA sequence 40 1.5
25gb|AY490931.1| Raspalia phylicoides trnK gene, partial sequence;... 40 1.5
26gb|AY490930.1| Raspalia globosa trnK gene, partial sequence; and... 40 1.5
27gb|AY490929.1| Raspalia microphylla trnK gene, partial sequence;... 40 1.5
28gb|AY490928.1| Raspalia angulata trnK gene, partial sequence; an... 40 1.5
29gb|AY490927.1| Raspalia variabilis trnK gene, partial sequence; ... 40 1.5
30gb|AY490926.1| Raspalia sacculata trnK gene, partial sequence; a... 40 1.5
31gb|AY490925.1| Raspalia trigyna trnK gene, partial sequence; and... 40 1.5
32gb|AY490924.1| Raspalia virgata trnK gene, partial sequence; and... 40 1.5
33gb|AY490923.1| Mniothamnea callunoides trnK gene, partial sequen... 40 1.5
34gb|AY490922.1| Mniothamnea bullata trnK gene, partial sequence; ... 40 1.5
35gb|AY490921.1| Lonchostoma purpureum trnK gene, partial sequence... 40 1.5
36gb|AY490920.1| Lonchostoma esterhuyseniae trnK gene, partial seq... 40 1.5
37gb|AY490919.1| Lonchostoma pentandrum trnK gene, partial sequenc... 40 1.5
38gb|AY490918.1| Lonchostoma myrtoides trnK gene, partial sequence... 40 1.5
39gb|AY490917.1| Lonchostoma monogynum trnK gene, partial sequence... 40 1.5
40ref|NM_106127.3| Arabidopsis thaliana calmodulin binding AT1G746... 38 6.1
41ref|NM_112720.2| Arabidopsis thaliana unknown protein AT3G18350 ... 38 6.1
42ref|NM_119828.1| Arabidopsis thaliana RNA polymerase II transcri... 38 6.1
43gb|AC124993.19| Mus musculus chromosome 15, clone RP23-150J21, c... 38 6.1
44gb|AC112361.5| Rattus norvegicus 9 BAC CH230-61F12 (Children's H... 38 6.1
45gb|AC138399.18| Mus musculus chromosome 1, clone RP23-113N18, co... 38 6.1
46gb|AC162389.6| Mus musculus 6 BAC RP24-114M8 (Roswell Park Cance... 38 6.1
47gb|AY463603.1| Arabidopsis thaliana TFIIB5/pBrp (At4g36650) mRNA... 38 6.1
48gb|AC127350.3| Mus musculus BAC clone RP23-64P14 from chromosome... 38 6.1
49gb|AC121925.2| Mus musculus BAC clone RP24-201D17 from 6, comple... 38 6.1
50emb|AL513190.13| Human DNA sequence from clone RP11-12J10 on chr... 38 6.1
51emb|AL158827.27| Human DNA sequence from clone RP11-330M2 on chr... 38 6.1
52emb|Z99708.1|ATAP22 Arabidopsis thaliana DNA chromosome 4, ESSA ... 38 6.1
53gb|AY096361.1| Arabidopsis thaliana unknown protein (At3g18350) ... 38 6.1
54gb|AY056262.1| Arabidopsis thaliana unknown protein (At3g18350) ... 38 6.1
55emb|AL161589.2|ATCHRIV85 Arabidopsis thaliana DNA chromosome 4, ... 38 6.1
56emb|AJ295068.1|ATH295068 Arabidopsis thaliana mRNA for TFIIB-rel... 38 6.1
57gb|AY128860.1| Arabidopsis thaliana unknown protein (At1g74690) ... 38 6.1
58gb|AC022024.7| Homo sapiens chromosome 10 clone RP11-432B10, com... 38 6.1
59gb|AY099679.1| Arabidopsis thaliana unknown protein (At1g74690) ... 38 6.1
60gb|BT006470.1| Arabidopsis thaliana At4g37010 gene, complete cds 38 6.1
61emb|BX823244.1|CNS0A7U0 Arabidopsis thaliana Full-length cDNA Co... 38 6.1
62emb|BX826547.1|CNS0A457 Arabidopsis thaliana Full-length cDNA Co... 38 6.1
63emb|BX827950.1|CNS0A3WN Arabidopsis thaliana Full-length cDNA Co... 38 6.1
64emb|BX827581.1|CNS0A3O2 Arabidopsis thaliana Full-length cDNA Co... 38 6.1
65gb|AC011765.6|AC011765 Arabidopsis thaliana chromosome 1 BAC F1M... 38 6.1
66emb|BX072582.6| Zebrafish DNA sequence from clone DKEY-222O19 in... 38 6.1
67gb|AC112986.16| Mus musculus chromosome 1, clone RP24-250E15, co... 38 6.1
68dbj|AB026658.1| Arabidopsis thaliana genomic DNA, chromosome 3, ... 38 6.1
69gb|AC008263.2|F25A4 Arabidopsis thaliana chromosome 1 BAC F25A4 ... 38 6.1
70emb|AL596263.8| Mouse DNA sequence from clone RP23-392O2 on chro... 38 6.1 
>ref|NM_194699.1| Oryza sativa (japonica cultivar-group) unknown protein
            (OSJNBa0020E23.16), mRNA
          Length = 2445

 Score = 95.6 bits (48), Expect = 3e-17
 Identities = 75/84 (89%)
 Strand = Plus / Minus

                                                                        
Query: 47   tatccttctccaccactactggcgctgcagggatgctgaaccaccactctctcaaccttc 106
            ||||||||||||| |||||||| |||||||| |||||||||||||||||||| |||||||
Sbjct: 2422 tatccttctccacgactactggagctgcaggaatgctgaaccaccactctcttaaccttc 2363

                                    
Query: 107  tggggcatctctctgggcttgctc 130
            |||  || || |||| ||||||||
Sbjct: 2362 tggtccacctttctgtgcttgctc 2339
to top
>gb|AC137615.2| Genomic sequence for Oryza sativa, Nipponbare strain, clone
              OSJNBa0053F13, from chromosome 5, complete sequence
          Length = 149538

 Score = 95.6 bits (48), Expect = 3e-17
 Identities = 75/84 (89%)
 Strand = Plus / Minus

                                                                          
Query: 47     tatccttctccaccactactggcgctgcagggatgctgaaccaccactctctcaaccttc 106
              ||||||||||||| |||||||| |||||||| |||||||||||||||||||| |||||||
Sbjct: 146798 tatccttctccacgactactggagctgcaggaatgctgaaccaccactctcttaaccttc 146739

                                      
Query: 107    tggggcatctctctgggcttgctc 130
              |||  || || |||| ||||||||
Sbjct: 146738 tggtccacctttctgtgcttgctc 146715
to top
>gb|AC137607.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone
             OSJNBa0006O14, complete sequence
          Length = 142764

 Score = 95.6 bits (48), Expect = 3e-17
 Identities = 75/84 (89%)
 Strand = Plus / Minus

                                                                         
Query: 47    tatccttctccaccactactggcgctgcagggatgctgaaccaccactctctcaaccttc 106
             ||||||||||||| |||||||| |||||||| |||||||||||||||||||| |||||||
Sbjct: 30269 tatccttctccacgactactggagctgcaggaatgctgaaccaccactctcttaaccttc 30210

                                     
Query: 107   tggggcatctctctgggcttgctc 130
             |||  || || |||| ||||||||
Sbjct: 30209 tggtccacctttctgtgcttgctc 30186
to top
>gb|AC145127.1| Oryza sativa (japonica cultivar-group) chromosome 10 clone
               Pseudo10p0.0-10p4.4, complete sequence
          Length = 2331000

 Score = 95.6 bits (48), Expect = 3e-17
 Identities = 75/84 (89%)
 Strand = Plus / Plus

                                                                           
Query: 47      tatccttctccaccactactggcgctgcagggatgctgaaccaccactctctcaaccttc 106
               ||||||||||||| |||||||| |||||||| |||||||||||||||||||| |||||||
Sbjct: 1708620 tatccttctccacgactactggagctgcaggaatgctgaaccaccactctcttaaccttc 1708679

                                       
Query: 107     tggggcatctctctgggcttgctc 130
               |||  || || |||| ||||||||
Sbjct: 1708680 tggtccacctttctgtgcttgctc 1708703
to top
>gb|AC025098.5| Oryza sativa (japonica cultivar-group) chromosome 10 clone OSJNBa0020E23,
              complete sequence
          Length = 151359

 Score = 95.6 bits (48), Expect = 3e-17
 Identities = 75/84 (89%)
 Strand = Plus / Plus

                                                                          
Query: 47     tatccttctccaccactactggcgctgcagggatgctgaaccaccactctctcaaccttc 106
              ||||||||||||| |||||||| |||||||| |||||||||||||||||||| |||||||
Sbjct: 105717 tatccttctccacgactactggagctgcaggaatgctgaaccaccactctcttaaccttc 105776

                                      
Query: 107    tggggcatctctctgggcttgctc 130
              |||  || || |||| ||||||||
Sbjct: 105777 tggtccacctttctgtgcttgctc 105800
to top
>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete
               sequence
          Length = 22685906

 Score = 95.6 bits (48), Expect = 3e-17
 Identities = 75/84 (89%)
 Strand = Plus / Plus

                                                                           
Query: 47      tatccttctccaccactactggcgctgcagggatgctgaaccaccactctctcaaccttc 106
               ||||||||||||| |||||||| |||||||| |||||||||||||||||||| |||||||
Sbjct: 1708620 tatccttctccacgactactggagctgcaggaatgctgaaccaccactctcttaaccttc 1708679

                                       
Query: 107     tggggcatctctctgggcttgctc 130
               |||  || || |||| ||||||||
Sbjct: 1708680 tggtccacctttctgtgcttgctc 1708703
to top
>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete
                sequence
          Length = 29737217

 Score = 95.6 bits (48), Expect = 3e-17
 Identities = 75/84 (89%)
 Strand = Plus / Minus

                                                                            
Query: 47       tatccttctccaccactactggcgctgcagggatgctgaaccaccactctctcaaccttc 106
                ||||||||||||| |||||||| |||||||| |||||||||||||||||||| |||||||
Sbjct: 10246704 tatccttctccacgactactggagctgcaggaatgctgaaccaccactctcttaaccttc 10246645

                                        
Query: 107      tggggcatctctctgggcttgctc 130
                |||  || || |||| ||||||||
Sbjct: 10246644 tggtccacctttctgtgcttgctc 10246621
to top
>dbj|AK072882.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023149K11, full
            insert sequence
          Length = 2633

 Score = 95.6 bits (48), Expect = 3e-17
 Identities = 75/84 (89%)
 Strand = Plus / Minus

                                                                        
Query: 47   tatccttctccaccactactggcgctgcagggatgctgaaccaccactctctcaaccttc 106
            ||||||||||||| |||||||| |||||||| |||||||||||||||||||| |||||||
Sbjct: 2365 tatccttctccacgactactggagctgcaggaatgctgaaccaccactctcttaaccttc 2306

                                    
Query: 107  tggggcatctctctgggcttgctc 130
            |||  || || |||| ||||||||
Sbjct: 2305 tggtccacctttctgtgcttgctc 2282
to top
>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence
          Length = 22698374

 Score = 95.6 bits (48), Expect = 3e-17
 Identities = 75/84 (89%)
 Strand = Plus / Plus

                                                                           
Query: 47      tatccttctccaccactactggcgctgcagggatgctgaaccaccactctctcaaccttc 106
               ||||||||||||| |||||||| |||||||| |||||||||||||||||||| |||||||
Sbjct: 1708571 tatccttctccacgactactggagctgcaggaatgctgaaccaccactctcttaaccttc 1708630

                                       
Query: 107     tggggcatctctctgggcttgctc 130
               |||  || || |||| ||||||||
Sbjct: 1708631 tggtccacctttctgtgcttgctc 1708654
to top
>gb|AY107143.1| Zea mays PCO129484 mRNA sequence
          Length = 500

 Score = 93.7 bits (47), Expect = 1e-16
 Identities = 71/79 (89%)
 Strand = Plus / Minus

                                                                       
Query: 52  ttctccaccactactggcgctgcagggatgctgaaccaccactctctcaaccttctgggg 111
           ||||||||||| ||||| |||||||| |||||||||||||||||||||||||||||||  
Sbjct: 340 ttctccaccaccactggagctgcaggtatgctgaaccaccactctctcaaccttctggta 281

                              
Query: 112 catctctctgggcttgctc 130
           || || |||| ||||||||
Sbjct: 280 cacctttctgtgcttgctc 262
to top
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
                sequence
          Length = 35954743

 Score = 79.8 bits (40), Expect = 2e-12
 Identities = 73/84 (86%)
 Strand = Plus / Plus

                                                                            
Query: 47       tatccttctccaccactactggcgctgcagggatgctgaaccaccactctctcaaccttc 106
                |||||||||| || |||||||| |||||||| |||||||||||| ||||||| |||||||
Sbjct: 13203790 tatccttctctacgactactggagctgcaggaatgctgaaccactactctcttaaccttc 13203849

                                        
Query: 107      tggggcatctctctgggcttgctc 130
                |||  || || |||| ||||||||
Sbjct: 13203850 tggtccacctttctgtgcttgctc 13203873
to top
>dbj|AP005778.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
             clone:OSJNBb0042G06
          Length = 123571

 Score = 79.8 bits (40), Expect = 2e-12
 Identities = 73/84 (86%)
 Strand = Plus / Plus

                                                                         
Query: 47    tatccttctccaccactactggcgctgcagggatgctgaaccaccactctctcaaccttc 106
             |||||||||| || |||||||| |||||||| |||||||||||| ||||||| |||||||
Sbjct: 73820 tatccttctctacgactactggagctgcaggaatgctgaaccactactctcttaaccttc 73879

                                     
Query: 107   tggggcatctctctgggcttgctc 130
             |||  || || |||| ||||||||
Sbjct: 73880 tggtccacctttctgtgcttgctc 73903
to top
>dbj|AP005011.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC
             clone:P0622F08
          Length = 140628

 Score = 79.8 bits (40), Expect = 2e-12
 Identities = 73/84 (86%)
 Strand = Plus / Plus

                                                                         
Query: 47    tatccttctccaccactactggcgctgcagggatgctgaaccaccactctctcaaccttc 106
             |||||||||| || |||||||| |||||||| |||||||||||| ||||||| |||||||
Sbjct: 11717 tatccttctctacgactactggagctgcaggaatgctgaaccactactctcttaaccttc 11776

                                     
Query: 107   tggggcatctctctgggcttgctc 130
             |||  || || |||| ||||||||
Sbjct: 11777 tggtccacctttctgtgcttgctc 11800
to top
>dbj|AP004371.2| Homo sapiens genomic DNA, chromosome 11q, clone:RP11-535N6, complete
             sequence
          Length = 180721

 Score = 44.1 bits (22), Expect = 0.099
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                   
Query: 56    ccaccactactggcgctgcagg 77
             ||||||||||||||||||||||
Sbjct: 80454 ccaccactactggcgctgcagg 80475
to top
>dbj|AK134651.1| Mus musculus adult male medulla oblongata cDNA, RIKEN full-length
            enriched library, clone:6330513I01 product:Similar to
            zinc finger 2.2, full insert sequence
          Length = 4914

 Score = 42.1 bits (21), Expect = 0.39
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 15   acaaattcattttggcttctt 35
            |||||||||||||||||||||
Sbjct: 4756 acaaattcattttggcttctt 4776
to top
>emb|AL731831.17| Mouse DNA sequence from clone RP23-105O13 on chromosome 2, complete
             sequence
          Length = 218818

 Score = 42.1 bits (21), Expect = 0.39
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 15    acaaattcattttggcttctt 35
             |||||||||||||||||||||
Sbjct: 77757 acaaattcattttggcttctt 77777
to top
>ref|XM_529101.1| PREDICTED: Pan troglodytes similar to nuclear transport factor
          2-like export factor 2 (LOC473728), mRNA
          Length = 477

 Score = 40.1 bits (20), Expect = 1.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                              
Query: 37 tcttctttggtatccttctc 56
          ||||||||||||||||||||
Sbjct: 57 tcttctttggtatccttctc 38
to top
>gb|BC109888.1| Bos taurus similar to caltractin, mRNA (cDNA clone MGC:133801
           IMAGE:8043769), complete cds
          Length = 1108

 Score = 40.1 bits (20), Expect = 1.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 37  tcttctttggtatccttctc 56
           ||||||||||||||||||||
Sbjct: 333 tcttctttggtatccttctc 314
to top
>emb|AL031387.4|HS596C15 Human DNA sequence from clone RP4-596C15 on chromosome Xq23 Contains
             the NXT2 gene for nuclear transport factor 2-like export
             factor 2 and the GUCY2F gene for guanylate cyclase 2F,
             retinal, complete sequence
          Length = 178863

 Score = 40.1 bits (20), Expect = 1.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 37    tcttctttggtatccttctc 56
             ||||||||||||||||||||
Sbjct: 13198 tcttctttggtatccttctc 13217
to top
>dbj|AK023289.1| Homo sapiens cDNA FLJ13227 fis, clone OVARC1000071, weakly similar
           to Homo sapiens NTF2-related export protein NXT1 (NXT1)
           mRNA
          Length = 2692

 Score = 40.1 bits (20), Expect = 1.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 37  tcttctttggtatccttctc 56
           ||||||||||||||||||||
Sbjct: 159 tcttctttggtatccttctc 140
to top
>ref|NM_018698.3| Homo sapiens nuclear transport factor 2-like export factor 2
           (NXT2), mRNA
          Length = 2692

 Score = 40.1 bits (20), Expect = 1.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 37  tcttctttggtatccttctc 56
           ||||||||||||||||||||
Sbjct: 159 tcttctttggtatccttctc 140
to top
>gb|DQ011859.1| Sus scrofa centrin 2 mRNA, partial cds
          Length = 470

 Score = 40.1 bits (20), Expect = 1.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 37  tcttctttggtatccttctc 56
           ||||||||||||||||||||
Sbjct: 216 tcttctttggtatccttctc 197
to top
>ref|NM_001038515.1| Bos taurus similar to caltractin (MGC133801), mRNA
          Length = 1108

 Score = 40.1 bits (20), Expect = 1.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 37  tcttctttggtatccttctc 56
           ||||||||||||||||||||
Sbjct: 333 tcttctttggtatccttctc 314
to top
>gb|AY610292.1| Sus scrofa clone rcov25b_b12.y1.abd, mRNA sequence
          Length = 677

 Score = 40.1 bits (20), Expect = 1.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 37  tcttctttggtatccttctc 56
           ||||||||||||||||||||
Sbjct: 314 tcttctttggtatccttctc 295
to top
>gb|AY490931.1| Raspalia phylicoides trnK gene, partial sequence; and maturase (matK)
            gene, complete cds; chloroplast
          Length = 2436

 Score = 40.1 bits (20), Expect = 1.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 91   cactctctcaaccttctggg 110
            ||||||||||||||||||||
Sbjct: 1655 cactctctcaaccttctggg 1674
to top
>gb|AY490930.1| Raspalia globosa trnK gene, partial sequence; and maturase (matK)
            gene, complete cds; chloroplast
          Length = 2435

 Score = 40.1 bits (20), Expect = 1.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 91   cactctctcaaccttctggg 110
            ||||||||||||||||||||
Sbjct: 1654 cactctctcaaccttctggg 1673
to top
>gb|AY490929.1| Raspalia microphylla trnK gene, partial sequence; and maturase (matK)
            gene, complete cds; chloroplast
          Length = 2437

 Score = 40.1 bits (20), Expect = 1.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 91   cactctctcaaccttctggg 110
            ||||||||||||||||||||
Sbjct: 1656 cactctctcaaccttctggg 1675
to top
>gb|AY490928.1| Raspalia angulata trnK gene, partial sequence; and maturase (matK)
            gene, complete cds; chloroplast
          Length = 2426

 Score = 40.1 bits (20), Expect = 1.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 91   cactctctcaaccttctggg 110
            ||||||||||||||||||||
Sbjct: 1651 cactctctcaaccttctggg 1670
to top
>gb|AY490927.1| Raspalia variabilis trnK gene, partial sequence; and maturase (matK)
            gene, complete cds; chloroplast
          Length = 2428

 Score = 40.1 bits (20), Expect = 1.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 91   cactctctcaaccttctggg 110
            ||||||||||||||||||||
Sbjct: 1653 cactctctcaaccttctggg 1672
to top
>gb|AY490926.1| Raspalia sacculata trnK gene, partial sequence; and maturase (matK)
            gene, complete cds; chloroplast
          Length = 2429

 Score = 40.1 bits (20), Expect = 1.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 91   cactctctcaaccttctggg 110
            ||||||||||||||||||||
Sbjct: 1654 cactctctcaaccttctggg 1673
to top
>gb|AY490925.1| Raspalia trigyna trnK gene, partial sequence; and maturase (matK)
            gene, complete cds; chloroplast
          Length = 2435

 Score = 40.1 bits (20), Expect = 1.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 91   cactctctcaaccttctggg 110
            ||||||||||||||||||||
Sbjct: 1660 cactctctcaaccttctggg 1679
to top
>gb|AY490924.1| Raspalia virgata trnK gene, partial sequence; and maturase (matK)
            gene, complete cds; chloroplast
          Length = 2434

 Score = 40.1 bits (20), Expect = 1.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 91   cactctctcaaccttctggg 110
            ||||||||||||||||||||
Sbjct: 1659 cactctctcaaccttctggg 1678
to top
>gb|AY490923.1| Mniothamnea callunoides trnK gene, partial sequence; and maturase
            (matK) gene, complete cds; chloroplast
          Length = 2436

 Score = 40.1 bits (20), Expect = 1.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 91   cactctctcaaccttctggg 110
            ||||||||||||||||||||
Sbjct: 1661 cactctctcaaccttctggg 1680
to top
>gb|AY490922.1| Mniothamnea bullata trnK gene, partial sequence; and maturase (matK)
            gene, complete cds; chloroplast
          Length = 2437

 Score = 40.1 bits (20), Expect = 1.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 91   cactctctcaaccttctggg 110
            ||||||||||||||||||||
Sbjct: 1662 cactctctcaaccttctggg 1681
to top
>gb|AY490921.1| Lonchostoma purpureum trnK gene, partial sequence; and maturase
            (matK) gene, complete cds; chloroplast
          Length = 2433

 Score = 40.1 bits (20), Expect = 1.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 91   cactctctcaaccttctggg 110
            ||||||||||||||||||||
Sbjct: 1658 cactctctcaaccttctggg 1677
to top
>gb|AY490920.1| Lonchostoma esterhuyseniae trnK gene, partial sequence; and maturase
            (matK) gene, complete cds; chloroplast
          Length = 2422

 Score = 40.1 bits (20), Expect = 1.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 91   cactctctcaaccttctggg 110
            ||||||||||||||||||||
Sbjct: 1647 cactctctcaaccttctggg 1666
to top
>gb|AY490919.1| Lonchostoma pentandrum trnK gene, partial sequence; and maturase
            (matK) gene, complete cds; chloroplast
          Length = 2427

 Score = 40.1 bits (20), Expect = 1.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 91   cactctctcaaccttctggg 110
            ||||||||||||||||||||
Sbjct: 1652 cactctctcaaccttctggg 1671
to top
>gb|AY490918.1| Lonchostoma myrtoides trnK gene, partial sequence; and maturase
            (matK) gene, complete cds; chloroplast
          Length = 2435

 Score = 40.1 bits (20), Expect = 1.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 91   cactctctcaaccttctggg 110
            ||||||||||||||||||||
Sbjct: 1660 cactctctcaaccttctggg 1679
to top
>gb|AY490917.1| Lonchostoma monogynum trnK gene, partial sequence; and maturase
            (matK) gene, complete cds; chloroplast
          Length = 2435

 Score = 40.1 bits (20), Expect = 1.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 91   cactctctcaaccttctggg 110
            ||||||||||||||||||||
Sbjct: 1660 cactctctcaaccttctggg 1679
to top
>ref|NM_106127.3| Arabidopsis thaliana calmodulin binding AT1G74690 mRNA, complete cds
          Length = 2820

 Score = 38.2 bits (19), Expect = 6.1
 Identities = 25/27 (92%)
 Strand = Plus / Minus

                                       
Query: 32   tcttatcttctttggtatccttctcca 58
            |||| ||||||||||||||||| ||||
Sbjct: 1538 tcttttcttctttggtatccttttcca 1512
to top
>ref|NM_112720.2| Arabidopsis thaliana unknown protein AT3G18350 mRNA, complete cds
          Length = 2575

 Score = 38.2 bits (19), Expect = 6.1
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                               
Query: 85   aaccaccactctctcaacc 103
            |||||||||||||||||||
Sbjct: 2338 aaccaccactctctcaacc 2320
to top
>ref|NM_119828.1| Arabidopsis thaliana RNA polymerase II transcription factor/
            transcription factor/ zinc ion binding AT4G36650 mRNA,
            complete cds
          Length = 1512

 Score = 38.2 bits (19), Expect = 6.1
 Identities = 22/23 (95%)
 Strand = Plus / Minus

                                   
Query: 23   attttggcttcttatcttctttg 45
            ||||||||| |||||||||||||
Sbjct: 1156 attttggctgcttatcttctttg 1134
to top
>gb|AC124993.19| Mus musculus chromosome 15, clone RP23-150J21, complete sequence
          Length = 214304

 Score = 38.2 bits (19), Expect = 6.1
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                 
Query: 50     ccttctccaccactactgg 68
              |||||||||||||||||||
Sbjct: 213277 ccttctccaccactactgg 213295
to top
>gb|AC112361.5| Rattus norvegicus 9 BAC CH230-61F12 (Children's Hospital Oakland Research
              Institute) complete sequence
          Length = 216648

 Score = 38.2 bits (19), Expect = 6.1
 Identities = 22/23 (95%)
 Strand = Plus / Minus

                                     
Query: 28     ggcttcttatcttctttggtatc 50
              ||||||| |||||||||||||||
Sbjct: 125337 ggcttctgatcttctttggtatc 125315
to top
>gb|AC138399.18| Mus musculus chromosome 1, clone RP23-113N18, complete sequence
          Length = 219810

 Score = 38.2 bits (19), Expect = 6.1
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                 
Query: 35     tatcttctttggtatcctt 53
              |||||||||||||||||||
Sbjct: 188571 tatcttctttggtatcctt 188589
to top
>gb|AC162389.6| Mus musculus 6 BAC RP24-114M8 (Roswell Park Cancer Institute (C57BL/6J
              Male) Mouse BAC Library) complete sequence
          Length = 189477

 Score = 38.2 bits (19), Expect = 6.1
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                 
Query: 24     ttttggcttcttatcttct 42
              |||||||||||||||||||
Sbjct: 173315 ttttggcttcttatcttct 173297
to top
>gb|AY463603.1| Arabidopsis thaliana TFIIB5/pBrp (At4g36650) mRNA, partial cds
          Length = 1509

 Score = 38.2 bits (19), Expect = 6.1
 Identities = 22/23 (95%)
 Strand = Plus / Minus

                                   
Query: 23   attttggcttcttatcttctttg 45
            ||||||||| |||||||||||||
Sbjct: 1156 attttggctgcttatcttctttg 1134
to top
>gb|AC127350.3| Mus musculus BAC clone RP23-64P14 from chromosome 18, complete sequence
          Length = 190228

 Score = 38.2 bits (19), Expect = 6.1
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                    
Query: 107   tggggcatctctctgggcttgct 129
             ||||||||| |||||||||||||
Sbjct: 60221 tggggcatcgctctgggcttgct 60243
to top
>gb|AC121925.2| Mus musculus BAC clone RP24-201D17 from 6, complete sequence
          Length = 180015

 Score = 38.2 bits (19), Expect = 6.1
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 24    ttttggcttcttatcttct 42
             |||||||||||||||||||
Sbjct: 42337 ttttggcttcttatcttct 42319
to top
>emb|AL513190.13| Human DNA sequence from clone RP11-12J10 on chromosome 10 Contains the
             3' end of the LHPP gene for phospholysine phosphohistidine
             inorganic pyrophosphate phosphatase, the 3' end of gene
             KIAA0140 (FLJ13019) and a CpG island, complete sequence
          Length = 120770

 Score = 38.2 bits (19), Expect = 6.1
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 93    ctctctcaaccttctgggg 111
             |||||||||||||||||||
Sbjct: 96059 ctctctcaaccttctgggg 96041
to top
>emb|AL158827.27| Human DNA sequence from clone RP11-330M2 on chromosome 9 Contains a
             pseudogene similar to part of a zinc finger protein, two
             novel pseudogenes, a novel gene similar to DKFZP434I1117,
             a novel pseudogene (FLJ23476), two novel gene, a novel
             gene similar to MGC12954 and four CpG islands, complete
             sequence
          Length = 186108

 Score = 38.2 bits (19), Expect = 6.1
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 76    gggatgctgaaccaccact 94
             |||||||||||||||||||
Sbjct: 30102 gggatgctgaaccaccact 30120
to top
>emb|Z99708.1|ATAP22 Arabidopsis thaliana DNA chromosome 4, ESSA I AP2 contig fragment No. 2
          Length = 198354

 Score = 38.2 bits (19), Expect = 6.1
 Identities = 22/23 (95%)
 Strand = Plus / Minus

                                    
Query: 23    attttggcttcttatcttctttg 45
             ||||||||| |||||||||||||
Sbjct: 85778 attttggctgcttatcttctttg 85756
to top
>gb|AY096361.1| Arabidopsis thaliana unknown protein (At3g18350) mRNA, complete cds
          Length = 2110

 Score = 38.2 bits (19), Expect = 6.1
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                               
Query: 85   aaccaccactctctcaacc 103
            |||||||||||||||||||
Sbjct: 2015 aaccaccactctctcaacc 1997
to top
>gb|AY056262.1| Arabidopsis thaliana unknown protein (At3g18350) mRNA, complete cds
          Length = 2577

 Score = 38.2 bits (19), Expect = 6.1
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                               
Query: 85   aaccaccactctctcaacc 103
            |||||||||||||||||||
Sbjct: 2336 aaccaccactctctcaacc 2318
to top
>emb|AL161589.2|ATCHRIV85 Arabidopsis thaliana DNA chromosome 4, contig fragment No. 85
          Length = 198750

 Score = 38.2 bits (19), Expect = 6.1
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                     
Query: 23     attttggcttcttatcttctttg 45
              ||||||||| |||||||||||||
Sbjct: 164950 attttggctgcttatcttctttg 164972
to top
>emb|AJ295068.1|ATH295068 Arabidopsis thaliana mRNA for TFIIB-related protein (pBrp gene)
          Length = 1631

 Score = 38.2 bits (19), Expect = 6.1
 Identities = 22/23 (95%)
 Strand = Plus / Minus

                                   
Query: 23   attttggcttcttatcttctttg 45
            ||||||||| |||||||||||||
Sbjct: 1228 attttggctgcttatcttctttg 1206
to top
>gb|AY128860.1| Arabidopsis thaliana unknown protein (At1g74690) mRNA, complete cds
          Length = 1906

 Score = 38.2 bits (19), Expect = 6.1
 Identities = 25/27 (92%)
 Strand = Plus / Minus

                                       
Query: 32   tcttatcttctttggtatccttctcca 58
            |||| ||||||||||||||||| ||||
Sbjct: 1366 tcttttcttctttggtatccttttcca 1340
to top
>gb|AC022024.7| Homo sapiens chromosome 10 clone RP11-432B10, complete sequence
          Length = 168862

 Score = 38.2 bits (19), Expect = 6.1
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                               
Query: 49   tccttctccaccactactg 67
            |||||||||||||||||||
Sbjct: 5556 tccttctccaccactactg 5538
to top
>gb|AY099679.1| Arabidopsis thaliana unknown protein (At1g74690) mRNA, complete cds
          Length = 2274

 Score = 38.2 bits (19), Expect = 6.1
 Identities = 25/27 (92%)
 Strand = Plus / Minus

                                       
Query: 32   tcttatcttctttggtatccttctcca 58
            |||| ||||||||||||||||| ||||
Sbjct: 1537 tcttttcttctttggtatccttttcca 1511
to top
>gb|BT006470.1| Arabidopsis thaliana At4g37010 gene, complete cds
          Length = 1512

 Score = 38.2 bits (19), Expect = 6.1
 Identities = 22/23 (95%)
 Strand = Plus / Minus

                                   
Query: 23   attttggcttcttatcttctttg 45
            ||||||||| |||||||||||||
Sbjct: 1156 attttggctgcttatcttctttg 1134
to top
>emb|BX823244.1|CNS0A7U0 Arabidopsis thaliana Full-length cDNA Complete sequence from clone
            GSLTLS15ZE04 of Adult vegetative tissue of strain col-0
            of Arabidopsis thaliana (thale cress)
          Length = 1607

 Score = 38.2 bits (19), Expect = 6.1
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                               
Query: 85   aaccaccactctctcaacc 103
            |||||||||||||||||||
Sbjct: 1400 aaccaccactctctcaacc 1382
to top
>emb|BX826547.1|CNS0A457 Arabidopsis thaliana Full-length cDNA Complete sequence from clone
            GSLTFB38ZC09 of Flowers and buds of strain col-0 of
            Arabidopsis thaliana (thale cress)
          Length = 1678

 Score = 38.2 bits (19), Expect = 6.1
 Identities = 22/23 (95%)
 Strand = Plus / Minus

                                   
Query: 23   attttggcttcttatcttctttg 45
            ||||||||| |||||||||||||
Sbjct: 1180 attttggctgcttatcttctttg 1158
to top
>emb|BX827950.1|CNS0A3WN Arabidopsis thaliana Full-length cDNA Complete sequence from clone
            GSLTPGH38ZC05 of Hormone Treated Callus of strain col-0
            of Arabidopsis thaliana (thale cress)
          Length = 1603

 Score = 38.2 bits (19), Expect = 6.1
 Identities = 22/23 (95%)
 Strand = Plus / Minus

                                   
Query: 23   attttggcttcttatcttctttg 45
            ||||||||| |||||||||||||
Sbjct: 1095 attttggctgcttatcttctttg 1073
to top
>emb|BX827581.1|CNS0A3O2 Arabidopsis thaliana Full-length cDNA Complete sequence from clone
            GSLTLS78ZH04 of Adult vegetative tissue of strain col-0
            of Arabidopsis thaliana (thale cress)
          Length = 1682

 Score = 38.2 bits (19), Expect = 6.1
 Identities = 22/23 (95%)
 Strand = Plus / Minus

                                   
Query: 23   attttggcttcttatcttctttg 45
            ||||||||| |||||||||||||
Sbjct: 1177 attttggctgcttatcttctttg 1155
to top
>gb|AC011765.6|AC011765 Arabidopsis thaliana chromosome 1 BAC F1M20 genomic sequence, complete
              sequence
          Length = 134402

 Score = 38.2 bits (19), Expect = 6.1
 Identities = 25/27 (92%)
 Strand = Plus / Plus

                                         
Query: 32     tcttatcttctttggtatccttctcca 58
              |||| ||||||||||||||||| ||||
Sbjct: 118359 tcttttcttctttggtatccttttcca 118385
to top
>emb|BX072582.6| Zebrafish DNA sequence from clone DKEY-222O19 in linkage group 11,
              complete sequence
          Length = 194918

 Score = 38.2 bits (19), Expect = 6.1
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                 
Query: 16     caaattcattttggcttct 34
              |||||||||||||||||||
Sbjct: 156445 caaattcattttggcttct 156463
to top
>gb|AC112986.16| Mus musculus chromosome 1, clone RP24-250E15, complete sequence
          Length = 157764

 Score = 38.2 bits (19), Expect = 6.1
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 35    tatcttctttggtatcctt 53
             |||||||||||||||||||
Sbjct: 37090 tatcttctttggtatcctt 37108
to top
>dbj|AB026658.1| Arabidopsis thaliana genomic DNA, chromosome 3, P1 clone: MYF24
          Length = 88989

 Score = 38.2 bits (19), Expect = 6.1
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 85    aaccaccactctctcaacc 103
             |||||||||||||||||||
Sbjct: 18551 aaccaccactctctcaacc 18533
to top
>gb|AC008263.2|F25A4 Arabidopsis thaliana chromosome 1 BAC F25A4 sequence, complete sequence
          Length = 115721

 Score = 38.2 bits (19), Expect = 6.1
 Identities = 25/27 (92%)
 Strand = Plus / Minus

                                         
Query: 32     tcttatcttctttggtatccttctcca 58
              |||| ||||||||||||||||| ||||
Sbjct: 112991 tcttttcttctttggtatccttttcca 112965
to top
>emb|AL596263.8| Mouse DNA sequence from clone RP23-392O2 on chromosome 2, complete
             sequence
          Length = 100060

 Score = 38.2 bits (19), Expect = 6.1
 Identities = 22/23 (95%)
 Strand = Plus / Minus

                                    
Query: 103   cttctggggcatctctctgggct 125
             |||||||||||||||||| ||||
Sbjct: 14869 cttctggggcatctctcttggct 14847


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 1,500,120
Number of Sequences: 3902068
Number of extensions: 1500120
Number of successful extensions: 124734
Number of sequences better than 10.0: 70
Number of HSP's better than 10.0 without gapping: 70
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 124430
Number of HSP's gapped (non-prelim): 304
length of query: 130
length of database: 17,233,045,268
effective HSP length: 21
effective length of query: 109
effective length of database: 17,151,101,840
effective search space: 1869470100560
effective search space used: 1869470100560
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 19 (38.2 bits)
to top