Clone Name | rbart60a09 |
---|---|
Clone Library Name | barley_pub |
>TIP22_ORYSA (Q5Z6F0) Probable aquaporin TIP2.2 (Tonoplast intrinsic protein| 2.2) (OsTIP2.2) Length = 248 Score = 34.7 bits (78), Expect = 0.063 Identities = 12/19 (63%), Positives = 17/19 (89%) Frame = -1 Query: 301 VYRYLYMCDNHTPVASNDY 245 VYRY+YMC +H PVAS+++ Sbjct: 230 VYRYVYMCGDHAPVASSEF 248
>SCM_DROME (Q9VHA0) Polycomb protein Scm (Sex comb on midleg protein)| Length = 877 Score = 32.3 bits (72), Expect = 0.31 Identities = 24/86 (27%), Positives = 37/86 (43%), Gaps = 8/86 (9%) Frame = +1 Query: 1 SHKETQLKNSQTPTTSQH-HIILQIEKHASSKCYNFTGLRSEPNNMTFFTSSR------- 156 S +T N + P + Q+ + L +++SK N ++SEPN TSS Sbjct: 585 SKSKTSTNNGKEPASQQNSNHSLNNNNNSASKSSNKVVIKSEPNGANAQTSSTTQALRKV 644 Query: 157 HSDHHARTFLCCRRHHGNQTPNDPSH 234 HHA T +GNQ + +H Sbjct: 645 RFQHHANTNTNSSATNGNQDTSQTTH 670
>YIN0_YEAST (P40467) Putative 108.8 kDa transcriptional regulatory protein in| FKH1-STH1 intergenic region Length = 964 Score = 30.0 bits (66), Expect = 1.6 Identities = 15/49 (30%), Positives = 27/49 (55%) Frame = +1 Query: 16 QLKNSQTPTTSQHHIILQIEKHASSKCYNFTGLRSEPNNMTFFTSSRHS 162 QLK+S + ++++ QI + +SK T L S P+N + F + +S Sbjct: 640 QLKDSSMAASRTYNLLNQIFEKLNSKTIQLTALHSSPSNESAFLVTNNS 688
>ICAM1_MOUSE (P13597) Intercellular adhesion molecule 1 precursor (ICAM-1)| (MALA-2) Length = 537 Score = 28.9 bits (63), Expect = 3.5 Identities = 15/55 (27%), Positives = 25/55 (45%), Gaps = 1/55 (1%) Frame = +1 Query: 28 SQTPTTSQHHIILQIEKHASSKCYNFTGLRSEPNN-MTFFTSSRHSDHHARTFLC 189 SQ + + ++ E H+ SK +G+ P FT + S+ H R+F C Sbjct: 320 SQLEVSEGSQVTVKCEAHSGSKVVLLSGVEPRPPTPQVQFTLNASSEDHKRSFFC 374
>YP66_CAEEL (Q09215) Hypothetical protein B0495.6| Length = 87 Score = 28.5 bits (62), Expect = 4.5 Identities = 21/68 (30%), Positives = 31/68 (45%), Gaps = 8/68 (11%) Frame = +1 Query: 55 HIILQIEKHASSKCYNFTGLRSEPNNMTFFTSSRH------SDHHARTFLCC--RRHHGN 210 H++ Q+E H SK Y T +R EP+ M ++ RH S + + C R N Sbjct: 9 HVLAQLE-HLQSK-YTGTAMRHEPSRMDCESAPRHSRLSNVSSRNEHVYCRCGEREPSSN 66 Query: 211 QTPNDPSH 234 +D SH Sbjct: 67 PLQSDKSH 74
>ZNF80_MACMU (P51505) Zinc finger protein 80| Length = 293 Score = 28.1 bits (61), Expect = 5.9 Identities = 14/48 (29%), Positives = 22/48 (45%) Frame = -1 Query: 298 YRYLYMCDNHTPVASNDY*AIHVKGRSVFGFHDAFGNIKKCVRGGQNV 155 + Y Y HT + + ++ R FG+H AF K GG+N+ Sbjct: 246 FYYSYSLTRHTRSHTGEKPYECLEHRKAFGYHSAFAQQSKIHSGGKNL 293
>ZNF80_PONPY (P51507) Zinc finger protein 80| Length = 273 Score = 28.1 bits (61), Expect = 5.9 Identities = 14/48 (29%), Positives = 22/48 (45%) Frame = -1 Query: 298 YRYLYMCDNHTPVASNDY*AIHVKGRSVFGFHDAFGNIKKCVRGGQNV 155 + Y Y HT + + ++ R FG+H AF K GG+N+ Sbjct: 226 FYYSYSLTRHTRSHTGEKPYECLEHRKAFGYHSAFAQQSKIHSGGKNL 273
>ZNF80_PANTR (P51506) Zinc finger protein 80| Length = 273 Score = 28.1 bits (61), Expect = 5.9 Identities = 14/48 (29%), Positives = 22/48 (45%) Frame = -1 Query: 298 YRYLYMCDNHTPVASNDY*AIHVKGRSVFGFHDAFGNIKKCVRGGQNV 155 + Y Y HT + + ++ R FG+H AF K GG+N+ Sbjct: 226 FYYSYSLTRHTRSHTGEKPYECLEHRKAFGYHSAFAQQSKIHSGGKNL 273
>ZNF80_GORGO (P51503) Zinc finger protein 80| Length = 273 Score = 28.1 bits (61), Expect = 5.9 Identities = 14/48 (29%), Positives = 22/48 (45%) Frame = -1 Query: 298 YRYLYMCDNHTPVASNDY*AIHVKGRSVFGFHDAFGNIKKCVRGGQNV 155 + Y Y HT + + ++ R FG+H AF K GG+N+ Sbjct: 226 FYYSYSLTRHTRSHTGEKPYECLEHRKAFGYHSAFAQQSKIHSGGKNL 273 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.316 0.125 0.402 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 40,817,684 Number of Sequences: 219361 Number of extensions: 758218 Number of successful extensions: 1748 Number of sequences better than 10.0: 9 Number of HSP's better than 10.0 without gapping: 1731 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 1748 length of database: 80,573,946 effective HSP length: 75 effective length of database: 64,121,871 effective search space used: 1538924904 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)