ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbart60a09
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1TIP22_ORYSA (Q5Z6F0) Probable aquaporin TIP2.2 (Tonoplast intrin... 35 0.063
2SCM_DROME (Q9VHA0) Polycomb protein Scm (Sex comb on midleg prot... 32 0.31
3YIN0_YEAST (P40467) Putative 108.8 kDa transcriptional regulator... 30 1.6
4ICAM1_MOUSE (P13597) Intercellular adhesion molecule 1 precursor... 29 3.5
5YP66_CAEEL (Q09215) Hypothetical protein B0495.6 28 4.5
6ZNF80_MACMU (P51505) Zinc finger protein 80 28 5.9
7ZNF80_PONPY (P51507) Zinc finger protein 80 28 5.9
8ZNF80_PANTR (P51506) Zinc finger protein 80 28 5.9
9ZNF80_GORGO (P51503) Zinc finger protein 80 28 5.9

>TIP22_ORYSA (Q5Z6F0) Probable aquaporin TIP2.2 (Tonoplast intrinsic protein|
           2.2) (OsTIP2.2)
          Length = 248

 Score = 34.7 bits (78), Expect = 0.063
 Identities = 12/19 (63%), Positives = 17/19 (89%)
 Frame = -1

Query: 301 VYRYLYMCDNHTPVASNDY 245
           VYRY+YMC +H PVAS+++
Sbjct: 230 VYRYVYMCGDHAPVASSEF 248



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>SCM_DROME (Q9VHA0) Polycomb protein Scm (Sex comb on midleg protein)|
          Length = 877

 Score = 32.3 bits (72), Expect = 0.31
 Identities = 24/86 (27%), Positives = 37/86 (43%), Gaps = 8/86 (9%)
 Frame = +1

Query: 1   SHKETQLKNSQTPTTSQH-HIILQIEKHASSKCYNFTGLRSEPNNMTFFTSSR------- 156
           S  +T   N + P + Q+ +  L    +++SK  N   ++SEPN     TSS        
Sbjct: 585 SKSKTSTNNGKEPASQQNSNHSLNNNNNSASKSSNKVVIKSEPNGANAQTSSTTQALRKV 644

Query: 157 HSDHHARTFLCCRRHHGNQTPNDPSH 234
              HHA T       +GNQ  +  +H
Sbjct: 645 RFQHHANTNTNSSATNGNQDTSQTTH 670



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>YIN0_YEAST (P40467) Putative 108.8 kDa transcriptional regulatory protein in|
           FKH1-STH1 intergenic region
          Length = 964

 Score = 30.0 bits (66), Expect = 1.6
 Identities = 15/49 (30%), Positives = 27/49 (55%)
 Frame = +1

Query: 16  QLKNSQTPTTSQHHIILQIEKHASSKCYNFTGLRSEPNNMTFFTSSRHS 162
           QLK+S    +  ++++ QI +  +SK    T L S P+N + F  + +S
Sbjct: 640 QLKDSSMAASRTYNLLNQIFEKLNSKTIQLTALHSSPSNESAFLVTNNS 688



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>ICAM1_MOUSE (P13597) Intercellular adhesion molecule 1 precursor (ICAM-1)|
           (MALA-2)
          Length = 537

 Score = 28.9 bits (63), Expect = 3.5
 Identities = 15/55 (27%), Positives = 25/55 (45%), Gaps = 1/55 (1%)
 Frame = +1

Query: 28  SQTPTTSQHHIILQIEKHASSKCYNFTGLRSEPNN-MTFFTSSRHSDHHARTFLC 189
           SQ   +    + ++ E H+ SK    +G+   P      FT +  S+ H R+F C
Sbjct: 320 SQLEVSEGSQVTVKCEAHSGSKVVLLSGVEPRPPTPQVQFTLNASSEDHKRSFFC 374



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>YP66_CAEEL (Q09215) Hypothetical protein B0495.6|
          Length = 87

 Score = 28.5 bits (62), Expect = 4.5
 Identities = 21/68 (30%), Positives = 31/68 (45%), Gaps = 8/68 (11%)
 Frame = +1

Query: 55  HIILQIEKHASSKCYNFTGLRSEPNNMTFFTSSRH------SDHHARTFLCC--RRHHGN 210
           H++ Q+E H  SK Y  T +R EP+ M   ++ RH      S  +   +  C  R    N
Sbjct: 9   HVLAQLE-HLQSK-YTGTAMRHEPSRMDCESAPRHSRLSNVSSRNEHVYCRCGEREPSSN 66

Query: 211 QTPNDPSH 234
              +D SH
Sbjct: 67  PLQSDKSH 74



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>ZNF80_MACMU (P51505) Zinc finger protein 80|
          Length = 293

 Score = 28.1 bits (61), Expect = 5.9
 Identities = 14/48 (29%), Positives = 22/48 (45%)
 Frame = -1

Query: 298 YRYLYMCDNHTPVASNDY*AIHVKGRSVFGFHDAFGNIKKCVRGGQNV 155
           + Y Y    HT   + +     ++ R  FG+H AF    K   GG+N+
Sbjct: 246 FYYSYSLTRHTRSHTGEKPYECLEHRKAFGYHSAFAQQSKIHSGGKNL 293



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>ZNF80_PONPY (P51507) Zinc finger protein 80|
          Length = 273

 Score = 28.1 bits (61), Expect = 5.9
 Identities = 14/48 (29%), Positives = 22/48 (45%)
 Frame = -1

Query: 298 YRYLYMCDNHTPVASNDY*AIHVKGRSVFGFHDAFGNIKKCVRGGQNV 155
           + Y Y    HT   + +     ++ R  FG+H AF    K   GG+N+
Sbjct: 226 FYYSYSLTRHTRSHTGEKPYECLEHRKAFGYHSAFAQQSKIHSGGKNL 273



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>ZNF80_PANTR (P51506) Zinc finger protein 80|
          Length = 273

 Score = 28.1 bits (61), Expect = 5.9
 Identities = 14/48 (29%), Positives = 22/48 (45%)
 Frame = -1

Query: 298 YRYLYMCDNHTPVASNDY*AIHVKGRSVFGFHDAFGNIKKCVRGGQNV 155
           + Y Y    HT   + +     ++ R  FG+H AF    K   GG+N+
Sbjct: 226 FYYSYSLTRHTRSHTGEKPYECLEHRKAFGYHSAFAQQSKIHSGGKNL 273



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>ZNF80_GORGO (P51503) Zinc finger protein 80|
          Length = 273

 Score = 28.1 bits (61), Expect = 5.9
 Identities = 14/48 (29%), Positives = 22/48 (45%)
 Frame = -1

Query: 298 YRYLYMCDNHTPVASNDY*AIHVKGRSVFGFHDAFGNIKKCVRGGQNV 155
           + Y Y    HT   + +     ++ R  FG+H AF    K   GG+N+
Sbjct: 226 FYYSYSLTRHTRSHTGEKPYECLEHRKAFGYHSAFAQQSKIHSGGKNL 273


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.316    0.125    0.402 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 40,817,684
Number of Sequences: 219361
Number of extensions: 758218
Number of successful extensions: 1748
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1731
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1748
length of database: 80,573,946
effective HSP length: 75
effective length of database: 64,121,871
effective search space used: 1538924904
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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