ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbart60a09
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1gb|U86763.1|TAU86763 Triticum aestivum delta-type tonoplast intr... 137 2e-29
2gb|AY525641.1| Triticum aestivum delta tonoplast intrinsic prote... 100 5e-18
3gb|AY525640.1| Triticum aestivum delta tonoplast intrinsic prote... 80 5e-12
4gb|AY525639.1| Triticum aestivum delta tonoplast intrinsic prote... 80 5e-12
5dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic D... 50 0.004
6dbj|AP005449.3| Oryza sativa (japonica cultivar-group) genomic D... 50 0.004
7dbj|AP004784.3| Oryza sativa (japonica cultivar-group) genomic D... 50 0.004
8dbj|AK104464.1| Oryza sativa (japonica cultivar-group) cDNA clon... 50 0.004
9dbj|AK104377.1| Oryza sativa (japonica cultivar-group) cDNA clon... 50 0.004
10dbj|AK104270.1| Oryza sativa (japonica cultivar-group) cDNA clon... 50 0.004
11dbj|AK099616.1| Oryza sativa (japonica cultivar-group) cDNA clon... 50 0.004
12dbj|AK099141.1| Oryza sativa (japonica cultivar-group) cDNA clon... 50 0.004
13dbj|AK099015.1| Oryza sativa (japonica cultivar-group) cDNA clon... 50 0.004
14dbj|AK073531.1| Oryza sativa (japonica cultivar-group) cDNA clon... 50 0.004
15emb|BX470264.22| Zebrafish DNA sequence from clone CH211-252F13 ... 42 1.00
16gb|AC165149.5| Mus musculus BAC clone RP24-114C10 from chromosom... 40 3.9
17ref|NM_020416.2| Homo sapiens protein phosphatase 2 (formerly 2A... 40 3.9
18ref|NM_181876.1| Homo sapiens protein phosphatase 2 (formerly 2A... 40 3.9
19gb|AC121551.11| Mus musculus chromosome 1, clone RP24-144H23, co... 40 3.9
20gb|AC006012.2| Homo sapiens PAC clone RP5-942I16 from 7, complet... 40 3.9
21gb|AC117212.5| Mus musculus BAC clone RP23-302A24 from chromosom... 40 3.9
22gb|BC021735.2| Homo sapiens protein phosphatase 2 (formerly 2A),... 40 3.9
23gb|BC045682.1| Homo sapiens protein phosphatase 2 (formerly 2A),... 40 3.9
24dbj|AK127386.1| Homo sapiens cDNA FLJ45468 fis, clone BRSTN2015788 40 3.9
25gb|AC068733.12| Homo sapiens chromosome 11, clone RP11-304C12, c... 40 3.9
26gb|AC073589.6| Mus musculus strain C57BL/6J chromosome 12 clone ... 40 3.9
27gb|AC084327.5| Mus musculus strain C57BL6/J chromosome 6 clone R... 40 3.9
28gb|AC116317.4| Homo sapiens BAC clone RP11-1406H17 from 4, compl... 40 3.9
29tpe|BN000872.1| TPA: TPA_exp: Mus musculus immunoglobulin heavy ... 40 3.9 
>gb|U86763.1|TAU86763 Triticum aestivum delta-type tonoplast intrinsic protein mRNA,
           complete cds
          Length = 1067

 Score =  137 bits (69), Expect = 2e-29
 Identities = 163/195 (83%), Gaps = 17/195 (8%)
 Strand = Plus / Minus

                                                                       
Query: 111 gcttcgatctgaaccaaacaacatgacgttcttcacatcatcgagacattc-------tg 163
           ||||||||||||||||||||||| || ||||||||||||||||| ||||||       ||
Sbjct: 932 gcttcgatctgaaccaaacaacaggatgttcttcacatcatcgaaacattcgtgagactg 873

                                                                       
Query: 164 accaccacgcacgcacttttttatgttgccgaaggcatcatggaaaccaaacaccgaacg 223
            |||||||| ||||||||||| |||||||||||||||| |||||         |||||||
Sbjct: 872 cccaccacgtacgcacttttt-atgttgccgaaggcattatgga---------ccgaacg 823

                                                                       
Query: 224 acccttcacatggatggcttagtagtcgttgctggcgacgggggtgtggttgtcgcacat 283
           || |||| ||||| |||||||||||||||||| |||||||||| |||||| ||| |||||
Sbjct: 822 actcttcccatggctggcttagtagtcgttgccggcgacggggctgtggtcgtcccacat 763

                          
Query: 284 gtacaggtaccggta 298
           ||| ||||| |||||
Sbjct: 762 gtataggtatcggta 748



 Score =  113 bits (57), Expect = 3e-22
 Identities = 83/91 (91%), Gaps = 3/91 (3%)
 Strand = Plus / Minus

                                                                        
Query: 1    tcgcataaggaaactcaactgaagaattctcaaaccccaacaacttcacaacatcacatt 60
            ||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||
Sbjct: 1026 tcgcataaggaaactcaactgaaaaattctcaaaccccaccaacttcacaacatcacatt 967

                                           
Query: 61   atattacagatagagaagcatgcatcatcca 91
               ||||||||| || | |||||||||||||
Sbjct: 966  ---ttacagataaaggaacatgcatcatcca 939
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>gb|AY525641.1| Triticum aestivum delta tonoplast intrinsic protein TIP2;3 mRNA,
           complete cds
          Length = 829

 Score = 99.6 bits (50), Expect = 5e-18
 Identities = 59/62 (95%)
 Strand = Plus / Minus

                                                                       
Query: 240 gcttagtagtcgttgctggcgacgggggtgtggttgtcgcacatgtacaggtaccggtag 299
           |||||||||||||||| |||||||| |||||||| |||||||||||||||||||||||||
Sbjct: 800 gcttagtagtcgttgccggcgacggcggtgtggtcgtcgcacatgtacaggtaccggtag 741

             
Query: 300 ac 301
           ||
Sbjct: 740 ac 739
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>gb|AY525640.1| Triticum aestivum delta tonoplast intrinsic protein TIP2;2 mRNA,
           complete cds
          Length = 853

 Score = 79.8 bits (40), Expect = 5e-12
 Identities = 55/60 (91%)
 Strand = Plus / Minus

                                                                       
Query: 242 ttagtagtcgttgctggcgacgggggtgtggttgtcgcacatgtacaggtaccggtagac 301
           |||||||||||||| |||||||| | |||||| |||||||||||||| ||||||||||||
Sbjct: 801 ttagtagtcgttgccggcgacggagctgtggtcgtcgcacatgtacacgtaccggtagac 742
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>gb|AY525639.1| Triticum aestivum delta tonoplast intrinsic protein TIP2;1 mRNA,
           complete cds
          Length = 817

 Score = 79.8 bits (40), Expect = 5e-12
 Identities = 58/64 (90%)
 Strand = Plus / Minus

                                                                       
Query: 238 tggcttagtagtcgttgctggcgacgggggtgtggttgtcgcacatgtacaggtaccggt 297
           |||||||||||||||||| |||||||| | |||||| |||||||||||| ||||| ||||
Sbjct: 806 tggcttagtagtcgttgccggcgacggagctgtggtcgtcgcacatgtataggtatcggt 747

               
Query: 298 agac 301
           ||||
Sbjct: 746 agac 743
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>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete
                sequence
          Length = 30731886

 Score = 50.1 bits (25), Expect = 0.004
 Identities = 43/49 (87%)
 Strand = Plus / Minus

                                                                 
Query: 253      tgctggcgacgggggtgtggttgtcgcacatgtacaggtaccggtagac 301
                ||||||| ||||||| ||||| | |||||||||| | ||||||||||||
Sbjct: 13251125 tgctggcaacgggggcgtggtcgccgcacatgtagacgtaccggtagac 13251077
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>dbj|AP005449.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC
             clone:P0427E01
          Length = 146395

 Score = 50.1 bits (25), Expect = 0.004
 Identities = 43/49 (87%)
 Strand = Plus / Minus

                                                              
Query: 253   tgctggcgacgggggtgtggttgtcgcacatgtacaggtaccggtagac 301
             ||||||| ||||||| ||||| | |||||||||| | ||||||||||||
Sbjct: 12935 tgctggcaacgggggcgtggtcgccgcacatgtagacgtaccggtagac 12887
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>dbj|AP004784.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, BAC
              clone:OSJNBa0012F14
          Length = 168629

 Score = 50.1 bits (25), Expect = 0.004
 Identities = 43/49 (87%)
 Strand = Plus / Minus

                                                               
Query: 253    tgctggcgacgggggtgtggttgtcgcacatgtacaggtaccggtagac 301
              ||||||| ||||||| ||||| | |||||||||| | ||||||||||||
Sbjct: 168313 tgctggcaacgggggcgtggtcgccgcacatgtagacgtaccggtagac 168265
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>dbj|AK104464.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-301-C06, full
           insert sequence
          Length = 1194

 Score = 50.1 bits (25), Expect = 0.004
 Identities = 43/49 (87%)
 Strand = Plus / Minus

                                                            
Query: 253 tgctggcgacgggggtgtggttgtcgcacatgtacaggtaccggtagac 301
           ||||||| ||||||| ||||| | |||||||||| | ||||||||||||
Sbjct: 825 tgctggcaacgggggcgtggtcgccgcacatgtagacgtaccggtagac 777
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>dbj|AK104377.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-035-G09, full
           insert sequence
          Length = 1196

 Score = 50.1 bits (25), Expect = 0.004
 Identities = 43/49 (87%)
 Strand = Plus / Minus

                                                            
Query: 253 tgctggcgacgggggtgtggttgtcgcacatgtacaggtaccggtagac 301
           ||||||| ||||||| ||||| | |||||||||| | ||||||||||||
Sbjct: 827 tgctggcaacgggggcgtggtcgccgcacatgtagacgtaccggtagac 779
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>dbj|AK104270.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-311-F03, full
           insert sequence
          Length = 1214

 Score = 50.1 bits (25), Expect = 0.004
 Identities = 43/49 (87%)
 Strand = Plus / Minus

                                                            
Query: 253 tgctggcgacgggggtgtggttgtcgcacatgtacaggtaccggtagac 301
           ||||||| ||||||| ||||| | |||||||||| | ||||||||||||
Sbjct: 827 tgctggcaacgggggcgtggtcgccgcacatgtagacgtaccggtagac 779
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>dbj|AK099616.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013050J20, full
           insert sequence
          Length = 1197

 Score = 50.1 bits (25), Expect = 0.004
 Identities = 43/49 (87%)
 Strand = Plus / Minus

                                                            
Query: 253 tgctggcgacgggggtgtggttgtcgcacatgtacaggtaccggtagac 301
           ||||||| ||||||| ||||| | |||||||||| | ||||||||||||
Sbjct: 828 tgctggcaacgggggcgtggtcgccgcacatgtagacgtaccggtagac 780
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>dbj|AK099141.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023055A02, full
           insert sequence
          Length = 1195

 Score = 50.1 bits (25), Expect = 0.004
 Identities = 43/49 (87%)
 Strand = Plus / Minus

                                                            
Query: 253 tgctggcgacgggggtgtggttgtcgcacatgtacaggtaccggtagac 301
           ||||||| ||||||| ||||| | |||||||||| | ||||||||||||
Sbjct: 826 tgctggcaacgggggcgtggtcgccgcacatgtagacgtaccggtagac 778
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>dbj|AK099015.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013116H02, full
           insert sequence
          Length = 1202

 Score = 50.1 bits (25), Expect = 0.004
 Identities = 43/49 (87%)
 Strand = Plus / Minus

                                                            
Query: 253 tgctggcgacgggggtgtggttgtcgcacatgtacaggtaccggtagac 301
           ||||||| ||||||| ||||| | |||||||||| | ||||||||||||
Sbjct: 828 tgctggcaacgggggcgtggtcgccgcacatgtagacgtaccggtagac 780
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>dbj|AK073531.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033044F19, full
           insert sequence
          Length = 1220

 Score = 50.1 bits (25), Expect = 0.004
 Identities = 43/49 (87%)
 Strand = Plus / Minus

                                                            
Query: 253 tgctggcgacgggggtgtggttgtcgcacatgtacaggtaccggtagac 301
           ||||||| ||||||| ||||| | |||||||||| | ||||||||||||
Sbjct: 826 tgctggcaacgggggcgtggtcgccgcacatgtagacgtaccggtagac 778
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>emb|BX470264.22| Zebrafish DNA sequence from clone CH211-252F13 in linkage group 7,
             complete sequence
          Length = 168673

 Score = 42.1 bits (21), Expect = 1.00
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 45    ttcacaacatcacattatatt 65
             |||||||||||||||||||||
Sbjct: 78807 ttcacaacatcacattatatt 78827
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>gb|AC165149.5| Mus musculus BAC clone RP24-114C10 from chromosome 13, complete
             sequence
          Length = 191162

 Score = 40.1 bits (20), Expect = 3.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 9     ggaaactcaactgaagaatt 28
             ||||||||||||||||||||
Sbjct: 13923 ggaaactcaactgaagaatt 13942
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>ref|NM_020416.2| Homo sapiens protein phosphatase 2 (formerly 2A), regulatory subunit
            B (PR 52), gamma isoform (PPP2R2C), transcript variant 1,
            mRNA
          Length = 4117

 Score = 40.1 bits (20), Expect = 3.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 32   aaaccccaacaacttcacaa 51
            ||||||||||||||||||||
Sbjct: 3856 aaaccccaacaacttcacaa 3837
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>ref|NM_181876.1| Homo sapiens protein phosphatase 2 (formerly 2A), regulatory subunit
            B (PR 52), gamma isoform (PPP2R2C), transcript variant 2,
            mRNA
          Length = 4087

 Score = 40.1 bits (20), Expect = 3.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 32   aaaccccaacaacttcacaa 51
            ||||||||||||||||||||
Sbjct: 3826 aaaccccaacaacttcacaa 3807
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>gb|AC121551.11| Mus musculus chromosome 1, clone RP24-144H23, complete sequence
          Length = 168683

 Score = 40.1 bits (20), Expect = 3.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 9      ggaaactcaactgaagaatt 28
              ||||||||||||||||||||
Sbjct: 136133 ggaaactcaactgaagaatt 136114
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>gb|AC006012.2| Homo sapiens PAC clone RP5-942I16 from 7, complete sequence
          Length = 121598

 Score = 40.1 bits (20), Expect = 3.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 197    ggcatcatggaaaccaaaca 216
              ||||||||||||||||||||
Sbjct: 113843 ggcatcatggaaaccaaaca 113824
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>gb|AC117212.5| Mus musculus BAC clone RP23-302A24 from chromosome 6, complete sequence
          Length = 212735

 Score = 40.1 bits (20), Expect = 3.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 32    aaaccccaacaacttcacaa 51
             ||||||||||||||||||||
Sbjct: 57462 aaaccccaacaacttcacaa 57481
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>gb|BC021735.2| Homo sapiens protein phosphatase 2 (formerly 2A), regulatory
           subunit B (PR 52), gamma isoform, mRNA (cDNA clone
           IMAGE:4816112)
          Length = 1172

 Score = 40.1 bits (20), Expect = 3.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 32  aaaccccaacaacttcacaa 51
           ||||||||||||||||||||
Sbjct: 918 aaaccccaacaacttcacaa 899
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>gb|BC045682.1| Homo sapiens protein phosphatase 2 (formerly 2A), regulatory subunit
            B (PR 52), gamma isoform, mRNA (cDNA clone IMAGE:5300526)
          Length = 2161

 Score = 40.1 bits (20), Expect = 3.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 32   aaaccccaacaacttcacaa 51
            ||||||||||||||||||||
Sbjct: 1900 aaaccccaacaacttcacaa 1881
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>dbj|AK127386.1| Homo sapiens cDNA FLJ45468 fis, clone BRSTN2015788
          Length = 1737

 Score = 40.1 bits (20), Expect = 3.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 32   aaaccccaacaacttcacaa 51
            ||||||||||||||||||||
Sbjct: 1499 aaaccccaacaacttcacaa 1480
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>gb|AC068733.12| Homo sapiens chromosome 11, clone RP11-304C12, complete sequence
          Length = 191656

 Score = 40.1 bits (20), Expect = 3.9
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 28     tctcaaaccccaacaacttcacaa 51
              ||||||||||||||| ||||||||
Sbjct: 107696 tctcaaaccccaacaccttcacaa 107719
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>gb|AC073589.6| Mus musculus strain C57BL/6J chromosome 12 clone RP23-147E23, complete
              sequence
          Length = 222430

 Score = 40.1 bits (20), Expect = 3.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 118    tctgaaccaaacaacatgac 137
              ||||||||||||||||||||
Sbjct: 111593 tctgaaccaaacaacatgac 111574
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>gb|AC084327.5| Mus musculus strain C57BL6/J chromosome 6 clone RP23-367K14, complete
             sequence
          Length = 108667

 Score = 40.1 bits (20), Expect = 3.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 32    aaaccccaacaacttcacaa 51
             ||||||||||||||||||||
Sbjct: 32732 aaaccccaacaacttcacaa 32713
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>gb|AC116317.4| Homo sapiens BAC clone RP11-1406H17 from 4, complete sequence
          Length = 160943

 Score = 40.1 bits (20), Expect = 3.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 32    aaaccccaacaacttcacaa 51
             ||||||||||||||||||||
Sbjct: 82311 aaaccccaacaacttcacaa 82330
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>tpe|BN000872.1| TPA: TPA_exp: Mus musculus immunoglobulin heavy chain variable region
               locus, strain C57BL/6
          Length = 2500000

 Score = 40.1 bits (20), Expect = 3.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 118     tctgaaccaaacaacatgac 137
               ||||||||||||||||||||
Sbjct: 1893522 tctgaaccaaacaacatgac 1893503


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2,661,729
Number of Sequences: 3902068
Number of extensions: 2661729
Number of successful extensions: 47446
Number of sequences better than 10.0: 29
Number of HSP's better than 10.0 without gapping: 29
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 47379
Number of HSP's gapped (non-prelim): 65
length of query: 301
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 279
effective length of database: 17,147,199,772
effective search space: 4784068736388
effective search space used: 4784068736388
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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