ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbart60a08 |
|---|---|
| Clone Library Name | barley_pub |
>PAT5_SOLTU (P15478) Patatin T5 precursor (Potato tuber protein)| Length = 386 Score = 41.6 bits (96), Expect = 5e-04 Identities = 24/57 (42%), Positives = 35/57 (61%) Frame = -3 Query: 375 TKENMEALIGIGKNLLTKTVSRVNIDNGMYETVDGAGTNEEALVRFAKRLSEERKLR 205 ++ NM+ L+ +G++LL K+VS+ D T EEAL RFAK LS+ +KLR Sbjct: 335 SEANMQLLVQVGEDLLKKSVSK-----------DNPETYEEALKRFAKLLSDRKKLR 380
>PAT3_SOLTU (P11768) Patatin class 1 precursor (Patatin class I) (Potato tuber| protein) Length = 386 Score = 41.6 bits (96), Expect = 5e-04 Identities = 25/57 (43%), Positives = 33/57 (57%) Frame = -3 Query: 375 TKENMEALIGIGKNLLTKTVSRVNIDNGMYETVDGAGTNEEALVRFAKRLSEERKLR 205 ++ NME L+ +G+ LL K VS+ D T EEAL RFAK LS+ +KLR Sbjct: 335 SEANMELLVQVGETLLKKPVSK-----------DSPETYEEALKRFAKLLSDRKKLR 380
>PAT2_SOLTU (P15477) Patatin B2 precursor (Potato tuber protein)| Length = 386 Score = 41.6 bits (96), Expect = 5e-04 Identities = 25/57 (43%), Positives = 33/57 (57%) Frame = -3 Query: 375 TKENMEALIGIGKNLLTKTVSRVNIDNGMYETVDGAGTNEEALVRFAKRLSEERKLR 205 ++ NME L+ +G+ LL K VS+ D T EEAL RFAK LS+ +KLR Sbjct: 335 SEANMELLVQVGETLLKKPVSK-----------DSPETYEEALKRFAKLLSDRKKLR 380
>PAT0_SOLTU (P07745) Patatin precursor (Potato tuber protein)| Length = 386 Score = 41.6 bits (96), Expect = 5e-04 Identities = 25/57 (43%), Positives = 33/57 (57%) Frame = -3 Query: 375 TKENMEALIGIGKNLLTKTVSRVNIDNGMYETVDGAGTNEEALVRFAKRLSEERKLR 205 ++ NME L+ +G+ LL K VS+ D T EEAL RFAK LS+ +KLR Sbjct: 335 SEANMELLVQVGETLLKKPVSK-----------DSPETYEEALKRFAKLLSDRKKLR 380
>PAT1_SOLTU (P15476) Patatin B1 precursor (Potato tuber protein) (Fragment)| Length = 377 Score = 40.8 bits (94), Expect = 8e-04 Identities = 25/57 (43%), Positives = 32/57 (56%) Frame = -3 Query: 375 TKENMEALIGIGKNLLTKTVSRVNIDNGMYETVDGAGTNEEALVRFAKRLSEERKLR 205 ++ NME L+ +G+ LL K VS+ D T EEAL RFAK LS +KLR Sbjct: 326 SEANMELLVQVGETLLKKPVSK-----------DSPETYEEALKRFAKLLSNRKKLR 371
>FLAA2_RHIME (P13118) Flagellin A| Length = 395 Score = 30.4 bits (67), Expect = 1.1 Identities = 21/83 (25%), Positives = 40/83 (48%) Frame = +1 Query: 106 SNESFTHLVASLSIVGRASSSLFSSLLGVEVGLAQLALLGEPLGEADERLFIGASTVDGL 285 +N S VA+++IVG +++L + + GV+ L + LG R+ + + V+ L Sbjct: 284 ANVSAGQSVANINIVGMGAAALDALISGVDAALTDMTSAAASLGSISSRIDLQSEFVNKL 343 Query: 286 IHPIVNVYPGYGLGEQILTDPNK 354 I + G+G + D N+ Sbjct: 344 SDSIES-----GVGRLVDADMNE 361
>MET4_YEAST (P32389) Transcriptional activator of sulfur metabolism MET4| (Methionine-requiring protein 4) Length = 672 Score = 30.0 bits (66), Expect = 1.4 Identities = 15/55 (27%), Positives = 31/55 (56%), Gaps = 2/55 (3%) Frame = -3 Query: 345 IGKNLLTKTVSRVNIDNGMYETVDGAGTNEEALVRFAKRLS--EERKLRQTNLNS 187 I ++L + RVN+ NG Y ++ AG + + + A ++ ++K+R+ N N+ Sbjct: 353 IPTSVLVTLLPRVNVPNGAYNSLISAGFDNDQIDAIAAIMAYHHQKKIRENNSNN 407
>Y2073_MYCTU (Q10681) Putative oxidoreductase Rv2073c/MT2133 (EC 1.-.-.-)| Length = 249 Score = 29.6 bits (65), Expect = 1.9 Identities = 22/62 (35%), Positives = 32/62 (51%), Gaps = 8/62 (12%) Frame = +1 Query: 85 IINHNY*SNESF-THLVASLSIVGRASSSLFSSLLGVEV-------GLAQLALLGEPLGE 240 I++ +Y + S THL A++ GR S +FSS+ G+ V G A+ L G G Sbjct: 110 IVHTDYVAQVSLLTHLAAAMRTAGRGSLVVFSSVAGIRVRRANYVYGSAKAGLDGFASGL 169 Query: 241 AD 246 AD Sbjct: 170 AD 171
>RPOB_PLAFA (P21421) DNA-directed RNA polymerase beta chain (EC 2.7.7.6)| Length = 1024 Score = 29.6 bits (65), Expect = 1.9 Identities = 13/40 (32%), Positives = 23/40 (57%) Frame = +1 Query: 19 SLLP*KKHTFLFPFIRESITKTIINHNY*SNESFTHLVAS 138 +L+ K HT + P I +++ I N+N+ N+ HL+ S Sbjct: 489 NLMSIKMHTQIVPIIYPNLSNIITNYNFILNKYLNHLIIS 528
>PTSN_KLEOX (P17162) Nitrogen regulatory protein (Enzyme IIA-NTR) [Includes:| Phosphotransferase enzyme IIA component (EC 2.7.1.-) (PTS system EIIA component)] Length = 162 Score = 28.9 bits (63), Expect = 3.2 Identities = 16/46 (34%), Positives = 23/46 (50%), Gaps = 4/46 (8%) Frame = -3 Query: 375 TKENMEALIGIGKNLLTKTVSR----VNIDNGMYETVDGAGTNEEA 250 TK ++ L + K L KT+ R D +YE + AG+N EA Sbjct: 117 TKTHLHTLSLVAKRLADKTICRRLRAAQSDEELYEIITEAGSNNEA 162
>GPDA_STAAN (P64191) Glycerol-3-phosphate dehydrogenase [NAD(P)+] (EC 1.1.1.94)| (NAD(P)H-dependent glycerol-3-phosphate dehydrogenase) Length = 332 Score = 28.9 bits (63), Expect = 3.2 Identities = 18/49 (36%), Positives = 27/49 (55%), Gaps = 5/49 (10%) Frame = +1 Query: 199 GLAQLALLGEPLGEADERLFIGASTVDGLIHPIVNVYP-----GYGLGE 330 GLA+++ LGE LG AD F+G + LI ++ + GY LG+ Sbjct: 219 GLAEISRLGEKLG-ADPMTFLGLGGIGDLIVTCISTHSRNFTLGYKLGQ 266
>GPDA_STAAM (P64190) Glycerol-3-phosphate dehydrogenase [NAD(P)+] (EC 1.1.1.94)| (NAD(P)H-dependent glycerol-3-phosphate dehydrogenase) Length = 332 Score = 28.9 bits (63), Expect = 3.2 Identities = 18/49 (36%), Positives = 27/49 (55%), Gaps = 5/49 (10%) Frame = +1 Query: 199 GLAQLALLGEPLGEADERLFIGASTVDGLIHPIVNVYP-----GYGLGE 330 GLA+++ LGE LG AD F+G + LI ++ + GY LG+ Sbjct: 219 GLAEISRLGEKLG-ADPMTFLGLGGIGDLIVTCISTHSRNFTLGYKLGQ 266
>MEGF6_HUMAN (O75095) Multiple epidermal growth factor-like domains 6 precursor| (EGF-like domain-containing protein 3) (Multiple EGF-like domain protein 3) Length = 1229 Score = 28.9 bits (63), Expect = 3.2 Identities = 18/40 (45%), Positives = 20/40 (50%) Frame = +3 Query: 195 GWFGAACAPRRASWRSGRAPLHWCQHRRRSHTSHCQCLPG 314 GWFG ACA +R S G A C H T C+C PG Sbjct: 931 GWFGEACA-QRCSCPPGAA----CHH----VTGACRCPPG 961 Score = 28.5 bits (62), Expect = 4.1 Identities = 19/69 (27%), Positives = 25/69 (36%), Gaps = 4/69 (5%) Frame = +3 Query: 120 YASGCIPKH----CR*GFFVSLLFSTWS*GWFGAACAPRRASWRSGRAPLHWCQHRRRSH 287 +A+ C P+ C GF S GW+G +C R + G Sbjct: 686 HAARCDPETGACLCLPGFVGSRCQDVCPAGWYGPSCQTRCSCANDGHC---------HPA 736 Query: 288 TSHCQCLPG 314 T HC C PG Sbjct: 737 TGHCSCAPG 745
>ABCBA_MOUSE (Q9JI39) ATP-binding cassette sub-family B member 10, mitochondrial| precursor (ATP-binding cassette transporter 10) (ABC transporter 10 protein) (ABC-mitochondrial erythroid protein) (ABC-me protein) Length = 715 Score = 28.5 bits (62), Expect = 4.1 Identities = 22/78 (28%), Positives = 32/78 (41%), Gaps = 2/78 (2%) Frame = +1 Query: 142 SIVGRASSSLFSSLLGVEVGLAQLALLGEPLGE-ADERLFIGASTVDGLIHPI-VNVYPG 315 SIV R +SLFSS+L EV GE + + + +G S + L + Sbjct: 207 SIVNRLRTSLFSSILRQEVAFFDKTRTGELINRLSSDTALLGRSVTENLSDGLRAGAQAS 266 Query: 316 YGLGEQILTDPNKRLHVL 369 G+G P+ VL Sbjct: 267 VGVGMMFFVSPSLATFVL 284
>FLGI_BUCAP (Q8K9K2) Flagellar P-ring protein precursor (Basal body P-ring| protein) Length = 369 Score = 28.5 bits (62), Expect = 4.1 Identities = 21/59 (35%), Positives = 30/59 (50%), Gaps = 9/59 (15%) Frame = +1 Query: 34 KKHTFLFPFIR----ESITKTIINHNY*SNE-----SFTHLVASLSIVGRASSSLFSSL 183 K ++FLF +R ES K IIN NY +N S ++V L+ +G + L S L Sbjct: 295 KINSFLFETLRKNQKESFLKNIINRNYINNNSVKNTSLNNIVRVLNSLGTKPNELISIL 353
>FLAB2_RHIME (P13119) Flagellin B| Length = 395 Score = 28.1 bits (61), Expect = 5.4 Identities = 21/83 (25%), Positives = 39/83 (46%) Frame = +1 Query: 106 SNESFTHLVASLSIVGRASSSLFSSLLGVEVGLAQLALLGEPLGEADERLFIGASTVDGL 285 +N S VA ++IVG +++L + + GV+ L + LG R+ + + V+ L Sbjct: 284 ANVSAGQSVAGINIVGMGAAALDALISGVDAALTDMTSAAADLGSIAMRIDLQSDFVNKL 343 Query: 286 IHPIVNVYPGYGLGEQILTDPNK 354 I + G+G + D N+ Sbjct: 344 SDSIDS-----GVGRLVDADMNE 361
>GPDA_STAAW (Q8NWM9) Glycerol-3-phosphate dehydrogenase [NAD(P)+] (EC 1.1.1.94)| (NAD(P)H-dependent glycerol-3-phosphate dehydrogenase) Length = 332 Score = 27.7 bits (60), Expect = 7.0 Identities = 18/49 (36%), Positives = 26/49 (53%), Gaps = 5/49 (10%) Frame = +1 Query: 199 GLAQLALLGEPLGEADERLFIGASTVDGLIHPIVNVYP-----GYGLGE 330 GLA+++ LGE LG AD F+G + LI + + GY LG+ Sbjct: 219 GLAEISRLGEKLG-ADPMTFLGLGGIGDLIVTCTSTHSRNFTLGYKLGQ 266
>GPDA_STAAS (Q6G989) Glycerol-3-phosphate dehydrogenase [NAD(P)+] (EC 1.1.1.94)| (NAD(P)H-dependent glycerol-3-phosphate dehydrogenase) Length = 332 Score = 27.7 bits (60), Expect = 7.0 Identities = 18/49 (36%), Positives = 26/49 (53%), Gaps = 5/49 (10%) Frame = +1 Query: 199 GLAQLALLGEPLGEADERLFIGASTVDGLIHPIVNVYP-----GYGLGE 330 GLA+++ LGE LG AD F+G + LI + + GY LG+ Sbjct: 219 GLAEISRLGEKLG-ADPMTFLGLGGIGDLIVTCTSTHSRNFTLGYKLGQ 266
>GPDA_STAAR (Q6GGT7) Glycerol-3-phosphate dehydrogenase [NAD(P)+] (EC 1.1.1.94)| (NAD(P)H-dependent glycerol-3-phosphate dehydrogenase) Length = 332 Score = 27.7 bits (60), Expect = 7.0 Identities = 18/49 (36%), Positives = 26/49 (53%), Gaps = 5/49 (10%) Frame = +1 Query: 199 GLAQLALLGEPLGEADERLFIGASTVDGLIHPIVNVYP-----GYGLGE 330 GLA+++ LGE LG AD F+G + LI + + GY LG+ Sbjct: 219 GLAEISRLGEKLG-ADPMTFLGLGGIGDLIVTCTSTHSRNFTLGYKLGQ 266
>GPDA_STAAC (Q5HFU9) Glycerol-3-phosphate dehydrogenase [NAD(P)+] (EC 1.1.1.94)| (NAD(P)H-dependent glycerol-3-phosphate dehydrogenase) Length = 332 Score = 27.7 bits (60), Expect = 7.0 Identities = 18/49 (36%), Positives = 26/49 (53%), Gaps = 5/49 (10%) Frame = +1 Query: 199 GLAQLALLGEPLGEADERLFIGASTVDGLIHPIVNVYP-----GYGLGE 330 GLA+++ LGE LG AD F+G + LI + + GY LG+ Sbjct: 219 GLAEISRLGEKLG-ADPMTFLGLGGIGDLIVTCTSTHSRNFTLGYKLGQ 266
>SYW_METMA (Q8PWV5) Tryptophanyl-tRNA synthetase (EC 6.1.1.2)| (Tryptophan--tRNA ligase) (TrpRS) Length = 491 Score = 27.7 bits (60), Expect = 7.0 Identities = 15/51 (29%), Positives = 25/51 (49%) Frame = -3 Query: 342 GKNLLTKTVSRVNIDNGMYETVDGAGTNEEALVRFAKRLSEERKLRQTNLN 190 GK + + R + G Y +V G G EAL KR+ + KL + +++ Sbjct: 226 GKMNMFRVEERETAEGGKYLSVRGKGAPREALQELKKRIPGKVKLYEEHID 276
>YB30_YEAST (P38125) Hypothetical transport protein YBR180W| Length = 572 Score = 27.7 bits (60), Expect = 7.0 Identities = 11/35 (31%), Positives = 22/35 (62%) Frame = +2 Query: 224 ESLLAKRTSASSLVPAPSTVSYIPLSMFTRDTVLV 328 E + K +++ S P+P T ++IP + F++D L+ Sbjct: 77 EEVAVKSSNSQSRDPSPDTQAHIPYTYFSKDQRLI 111
>NORM_PASMU (Q9CMZ9) Probable multidrug resistance protein norM| (Multidrug-efflux transporter) Length = 464 Score = 27.3 bits (59), Expect = 9.2 Identities = 17/40 (42%), Positives = 24/40 (60%) Frame = +1 Query: 121 THLVASLSIVGRASSSLFSSLLGVEVGLAQLALLGEPLGE 240 T +VAS I SS LF +L + +G+A L+G+ LGE Sbjct: 273 TDIVASHQIALNTSSFLF--MLPMSLGMAATILVGQRLGE 310
>Y057_METKA (Q8TZ82) UPF0215 protein MK0057| Length = 197 Score = 27.3 bits (59), Expect = 9.2 Identities = 11/28 (39%), Positives = 16/28 (57%) Frame = -2 Query: 196 PQLQVEKRRETKKPYLQCLGMQPDA*RI 113 P V+ RR+ Y QC G++PD R+ Sbjct: 136 PVHSVKTRRDEPPVYFQCAGVEPDVARV 163
>PROA_LISMO (Q93Q55) Gamma-glutamyl phosphate reductase (GPR) (EC 1.2.1.41)| (Glutamate-5-semialdehyde dehydrogenase) (Glutamyl-gamma-semialdehyde dehydrogenase) (GSA dehydrogenase) Length = 415 Score = 27.3 bits (59), Expect = 9.2 Identities = 19/54 (35%), Positives = 27/54 (50%) Frame = -3 Query: 375 TKENMEALIGIGKNLLTKTVSRVNIDNGMYETVDGAGTNEEALVRFAKRLSEER 214 TK+ AL+ + +LLT T S + +N GT E + R RL+EER Sbjct: 23 TKQKNAALLNLSNDLLTHTASLLEENNKDIIRAREKGTPETMIDRL--RLTEER 74
>NORM_MANSM (Q65SY9) Probable multidrug resistance protein norM| (Multidrug-efflux transporter) Length = 465 Score = 27.3 bits (59), Expect = 9.2 Identities = 21/60 (35%), Positives = 30/60 (50%), Gaps = 9/60 (15%) Frame = +1 Query: 121 THLVASLSIVGRASSSLFSSLLGVEVGLAQLALLGEPLGEADE---------RLFIGAST 273 T+ VAS I SS +F +L + +G+A L+G+ LGE LFIG +T Sbjct: 274 TNAVASHQIALNTSSFIF--MLPMSLGMATTILVGQSLGERSPLKAKDISYVALFIGLAT 331
>NU2M_PODAN (P15578) NADH-ubiquinone oxidoreductase chain 2 (EC 1.6.5.3) (NADH| dehydrogenase subunit 2) Length = 556 Score = 27.3 bits (59), Expect = 9.2 Identities = 20/57 (35%), Positives = 30/57 (52%) Frame = +1 Query: 49 LFPFIRESITKTIINHNY*SNESFTHLVASLSIVGRASSSLFSSLLGVEVGLAQLAL 219 +F F+ E + T +NY S S+T+L+ SSLFS ++G VGL Q + Sbjct: 284 IFIFLLELVYHT---NNYLSEFSWTYLLLI--------SSLFSLIIGTVVGLTQFRI 329
>PATR_THEFY (Q47KH1) Putative phenylalanine aminotransferase (EC 2.6.1.-)| Length = 359 Score = 27.3 bits (59), Expect = 9.2 Identities = 14/29 (48%), Positives = 15/29 (51%) Frame = -1 Query: 206 AKPTSTPSREEKRDEEALPTMLRDATRCV 120 A P P REE D EAL + D TR V Sbjct: 128 ATPIHVPLREETHDLEALAAAVTDRTRMV 156 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 53,941,313 Number of Sequences: 219361 Number of extensions: 1029128 Number of successful extensions: 3027 Number of sequences better than 10.0: 28 Number of HSP's better than 10.0 without gapping: 2965 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 3027 length of database: 80,573,946 effective HSP length: 101 effective length of database: 58,418,485 effective search space used: 1402043640 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
