ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbart60a07
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1emb|BX546451.2| Human DNA sequence from clone WI2-8737H7 on chro... 40 0.62
2emb|AL022574.7|HS1111N9 Human DNA sequence from clone RP5-1111N9... 40 0.62
3emb|AL513533.15| Human DNA sequence from clone RP11-341B24 on ch... 38 2.5
4gb|AC102288.11| Mus musculus chromosome 18, clone RP24-346H24, c... 36 9.7
5gb|AY494981.1| Triticum turgidum A genome HMW glutenin A gene lo... 36 9.7
6emb|AL355601.19| Human DNA sequence from clone RP11-445L6 on chr... 36 9.7
7gb|DQ145721.1| Homo sapiens v-abl Abelson murine leukemia viral ... 36 9.7
8emb|BX510923.8| Zebrafish DNA sequence from clone CH211-214J8 in... 36 9.7
9dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic D... 36 9.7
10dbj|AP004460.2| Oryza sativa (japonica cultivar-group) genomic D... 36 9.7
11emb|AL359092.14| Human DNA sequence from clone RP11-57C19 on chr... 36 9.7
12dbj|AP006292.2| Homo sapiens genomic DNA, chromosome 9 clone:RP1... 36 9.7
13emb|AL772272.14| Mouse DNA sequence from clone RP23-369I8 on chr... 36 9.7

>emb|BX546451.2| Human DNA sequence from clone WI2-8737H7 on chromosome X, complete
             sequence
          Length = 38017

 Score = 40.1 bits (20), Expect = 0.62
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 1     aaaaaccacacttcacaaca 20
             ||||||||||||||||||||
Sbjct: 33223 aaaaaccacacttcacaaca 33204



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>emb|AL022574.7|HS1111N9 Human DNA sequence from clone RP5-1111N9 on chromosome Xq21.1-21.3,
             complete sequence
          Length = 148521

 Score = 40.1 bits (20), Expect = 0.62
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 1     aaaaaccacacttcacaaca 20
             ||||||||||||||||||||
Sbjct: 86870 aaaaaccacacttcacaaca 86851



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>emb|AL513533.15| Human DNA sequence from clone RP11-341B24 on chromosome 10 Contains the
             3' end of the LIPA gene for lipase A lysosomal acid
             cholesterol esterase (Wolman disease), a novel zinc finger
             pseudogene and the CH25 gene for cholesterol
             25-hydroxylase, complete sequence
          Length = 148151

 Score = 38.2 bits (19), Expect = 2.5
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 2     aaaaccacacttcacaaca 20
             |||||||||||||||||||
Sbjct: 42933 aaaaccacacttcacaaca 42915



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>gb|AC102288.11| Mus musculus chromosome 18, clone RP24-346H24, complete sequence
          Length = 154552

 Score = 36.2 bits (18), Expect = 9.7
 Identities = 18/18 (100%)
 Strand = Plus / Plus

                                
Query: 13     tcacaacacatccctggg 30
              ||||||||||||||||||
Sbjct: 134960 tcacaacacatccctggg 134977



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>gb|AY494981.1| Triticum turgidum A genome HMW glutenin A gene locus, sequence
          Length = 307015

 Score = 36.2 bits (18), Expect = 9.7
 Identities = 18/18 (100%)
 Strand = Plus / Plus

                                
Query: 12     ttcacaacacatccctgg 29
              ||||||||||||||||||
Sbjct: 246244 ttcacaacacatccctgg 246261



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>emb|AL355601.19| Human DNA sequence from clone RP11-445L6 on chromosome 9 Contains the 5'
              UTR of the gene for deleted in esophageal cancer 1 (DEC1)
              and the 5' end of a novel gene, complete sequence
          Length = 183104

 Score = 36.2 bits (18), Expect = 9.7
 Identities = 24/26 (92%)
 Strand = Plus / Minus

                                        
Query: 5      accacacttcacaacacatccctggg 30
              |||||||||||||| | |||||||||
Sbjct: 117489 accacacttcacaaaatatccctggg 117464



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>gb|DQ145721.1| Homo sapiens v-abl Abelson murine leukemia viral oncogene homolog 1
             (ABL1) gene, complete cds
          Length = 176708

 Score = 36.2 bits (18), Expect = 9.7
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                               
Query: 7     cacacttcacaacacatc 24
             ||||||||||||||||||
Sbjct: 11100 cacacttcacaacacatc 11083



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>emb|BX510923.8| Zebrafish DNA sequence from clone CH211-214J8 in linkage group 5,
             complete sequence
          Length = 165838

 Score = 36.2 bits (18), Expect = 9.7
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                               
Query: 6     ccacacttcacaacacat 23
             ||||||||||||||||||
Sbjct: 60502 ccacacttcacaacacat 60485



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>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete
               sequence
          Length = 28434780

 Score = 36.2 bits (18), Expect = 9.7
 Identities = 18/18 (100%)
 Strand = Plus / Plus

                                 
Query: 4       aaccacacttcacaacac 21
               ||||||||||||||||||
Sbjct: 3336647 aaccacacttcacaacac 3336664



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>dbj|AP004460.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC
              clone:P0438H08
          Length = 148626

 Score = 36.2 bits (18), Expect = 9.7
 Identities = 18/18 (100%)
 Strand = Plus / Plus

                                
Query: 4      aaccacacttcacaacac 21
              ||||||||||||||||||
Sbjct: 114214 aaccacacttcacaacac 114231



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>emb|AL359092.14| Human DNA sequence from clone RP11-57C19 on chromosome 9, complete
              sequence
          Length = 173463

 Score = 36.2 bits (18), Expect = 9.7
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                                
Query: 7      cacacttcacaacacatc 24
              ||||||||||||||||||
Sbjct: 117823 cacacttcacaacacatc 117806



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>dbj|AP006292.2| Homo sapiens genomic DNA, chromosome 9 clone:RP11-1252A13, complete
              sequence
          Length = 208026

 Score = 36.2 bits (18), Expect = 9.7
 Identities = 24/26 (92%)
 Strand = Plus / Minus

                                        
Query: 5      accacacttcacaacacatccctggg 30
              |||||||||||||| | |||||||||
Sbjct: 144256 accacacttcacaaaatatccctggg 144231



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>emb|AL772272.14| Mouse DNA sequence from clone RP23-369I8 on chromosome 4, complete
              sequence
          Length = 129858

 Score = 36.2 bits (18), Expect = 9.7
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                                
Query: 17     aacacatccctgggtgat 34
              ||||||||||||||||||
Sbjct: 120724 aacacatccctgggtgat 120707


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 346,840
Number of Sequences: 3902068
Number of extensions: 346840
Number of successful extensions: 19200
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 19178
Number of HSP's gapped (non-prelim): 22
length of query: 65
length of database: 17,233,045,268
effective HSP length: 21
effective length of query: 44
effective length of database: 17,151,101,840
effective search space: 754648480960
effective search space used: 754648480960
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 18 (36.2 bits)
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