>ref|XM_798334.1| Trypanosoma brucei TREU927 hypothetical protein (Tb09.160.0350)
           partial mRNA
          Length = 1614

 Score = 44.1 bits (22), Expect = 0.12
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                     
Query: 121 gggaaaagagttgatcaaatagctct 146
           |||||||||||||||||||| |||||
Sbjct: 793 gggaaaagagttgatcaaatcgctct 768

>gb|AC108949.4| Mus musculus BAC clone RP23-451K2 from 6, complete sequence
          Length = 181571

 Score = 42.1 bits (21), Expect = 0.46
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                       
Query: 112    aaaattaaagggaaaagagttgatc 136
              ||||||||||||||||||| |||||
Sbjct: 127020 aaaattaaagggaaaagaggtgatc 127044

>gb|AC119995.22| Mus musculus chromosome 3, clone RP24-120B18, complete sequence
          Length = 182140

 Score = 42.1 bits (21), Expect = 0.46
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                     
Query: 37   gccatgggggagctattgtctgtac 61
            ||||||||| |||||||||||||||
Sbjct: 5077 gccatggggaagctattgtctgtac 5053

>emb|AL691419.10| Mouse DNA sequence from clone RP23-95I4 on chromosome 3, complete
            sequence
          Length = 249405

 Score = 42.1 bits (21), Expect = 0.46
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                     
Query: 37   gccatgggggagctattgtctgtac 61
            ||||||||| |||||||||||||||
Sbjct: 3480 gccatggggaagctattgtctgtac 3504

>emb|CR656067.2|CNS0F56X Tetraodon nigroviridis full-length cDNA
          Length = 378

 Score = 40.1 bits (20), Expect = 1.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 1   gagcagcaaaacacatattt 20
           ||||||||||||||||||||
Sbjct: 335 gagcagcaaaacacatattt 354

>emb|BX901978.14| Zebrafish DNA sequence from clone DKEY-155M6 in linkage group 18,
             complete sequence
          Length = 168101

 Score = 40.1 bits (20), Expect = 1.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 120   agggaaaagagttgatcaaa 139
             ||||||||||||||||||||
Sbjct: 79324 agggaaaagagttgatcaaa 79305

>emb|BX465846.14| Zebrafish DNA sequence from clone CH211-215B21 in linkage group 18,
             complete sequence
          Length = 109342

 Score = 40.1 bits (20), Expect = 1.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 120   agggaaaagagttgatcaaa 139
             ||||||||||||||||||||
Sbjct: 51934 agggaaaagagttgatcaaa 51953

>gb|AC024761.1| Caenorhabditis elegans cosmid Y38C1AA, complete sequence
          Length = 78276

 Score = 38.2 bits (19), Expect = 7.1
 Identities = 22/23 (95%)
 Strand = Plus / Minus

                                    
Query: 112   aaaattaaagggaaaagagttga 134
             ||||||| |||||||||||||||
Sbjct: 36017 aaaattagagggaaaagagttga 35995

>gb|AC139867.4| Mus musculus BAC clone RP23-430P22 from chromosome 1, complete sequence
          Length = 224730

 Score = 38.2 bits (19), Expect = 7.1
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                 
Query: 16     tattttatggggaaaatct 34
              |||||||||||||||||||
Sbjct: 129797 tattttatggggaaaatct 129815

>ref|XM_582069.2| PREDICTED: Bos taurus similar to amyloid beta precursor
            protein-binding protein 2 (LOC505734), mRNA
          Length = 4485

 Score = 38.2 bits (19), Expect = 7.1
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                               
Query: 17   attttatggggaaaatctt 35
            |||||||||||||||||||
Sbjct: 2604 attttatggggaaaatctt 2622

>gb|AC132389.3| Mus musculus BAC clone RP23-448A4 from chromosome 19, complete sequence
          Length = 165998

 Score = 38.2 bits (19), Expect = 7.1
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                 
Query: 5      agcaaaacacatattttat 23
              |||||||||||||||||||
Sbjct: 109956 agcaaaacacatattttat 109938

>ref|XM_537708.2| PREDICTED: Canis familiaris similar to amyloid beta precursor
            protein-binding protein 2 (LOC480588), mRNA
          Length = 2938

 Score = 38.2 bits (19), Expect = 7.1
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                               
Query: 17   attttatggggaaaatctt 35
            |||||||||||||||||||
Sbjct: 2491 attttatggggaaaatctt 2509

>ref|XM_759550.1| Theileria parva strain Muguga hypothetical protein (TP02_0074)
           partial mRNA
          Length = 1453

 Score = 38.2 bits (19), Expect = 7.1
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                              
Query: 117 taaagggaaaagagttgat 135
           |||||||||||||||||||
Sbjct: 814 taaagggaaaagagttgat 832

>emb|AL162416.13| Human DNA sequence from clone RP11-296H15 on chromosome 9 Contains the
             3' end of the TMC1 gene for transmembrane
             cochlear-expressed 1 and three CpG islands, complete
             sequence
          Length = 75609

 Score = 38.2 bits (19), Expect = 7.1
 Identities = 22/23 (95%)
 Strand = Plus / Minus

                                    
Query: 65    cattgcagccatgaaacaaaaac 87
             |||||||||||| ||||||||||
Sbjct: 38947 cattgcagccattaaacaaaaac 38925

>gb|AY145133.1| Caenorhabditis elegans TCL-2 (tcl-2) mRNA, complete cds
          Length = 1771

 Score = 38.2 bits (19), Expect = 7.1
 Identities = 22/23 (95%)
 Strand = Plus / Minus

                                   
Query: 112  aaaattaaagggaaaagagttga 134
            ||||||| |||||||||||||||
Sbjct: 1445 aaaattagagggaaaagagttga 1423

>emb|CR857629.1| Pongo pygmaeus mRNA; cDNA DKFZp459F0530 (from clone DKFZp459F0530)
          Length = 4170

 Score = 38.2 bits (19), Expect = 7.1
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                               
Query: 17   attttatggggaaaatctt 35
            |||||||||||||||||||
Sbjct: 2470 attttatggggaaaatctt 2488

>gb|AC112193.2| Homo sapiens chromosome 5 clone RP11-373F8, complete sequence
          Length = 173092

 Score = 38.2 bits (19), Expect = 7.1
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                 
Query: 14     catattttatggggaaaat 32
              |||||||||||||||||||
Sbjct: 157081 catattttatggggaaaat 157099

>gb|AC103986.4| Homo sapiens, clone RP11-197M8, complete sequence
          Length = 160981

 Score = 38.2 bits (19), Expect = 7.1
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                 
Query: 113    aaattaaagggaaaagagt 131
              |||||||||||||||||||
Sbjct: 101655 aaattaaagggaaaagagt 101673

>gb|AE009951.2| Fusobacterium nucleatum subsp. nucleatum ATCC 25586, complete genome
          Length = 2174500

 Score = 38.2 bits (19), Expect = 7.1
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                 
Query: 124    aaaagagttgatcaaatag 142
              |||||||||||||||||||
Sbjct: 363587 aaaagagttgatcaaatag 363569

>ref|NM_067474.4| Caenorhabditis elegans T Cell Lineage defect family member (tcl-2)
            (tcl-2) mRNA, complete cds
          Length = 1730

 Score = 38.2 bits (19), Expect = 7.1
 Identities = 22/23 (95%)
 Strand = Plus / Minus

                                   
Query: 112  aaaattaaagggaaaagagttga 134
            ||||||| |||||||||||||||
Sbjct: 1423 aaaattagagggaaaagagttga 1401

>gb|AC009432.7|AC009432 Homo sapiens chromosome 15, clone RP11-57P19, complete sequence
          Length = 199609

 Score = 38.2 bits (19), Expect = 7.1
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                 
Query: 113    aaattaaagggaaaagagt 131
              |||||||||||||||||||
Sbjct: 150167 aaattaaagggaaaagagt 150149

>gb|AC007021.3|AC007021 Homo sapiens PAC clone RP6-155F9 from Xq23, complete sequence
          Length = 122674

 Score = 38.2 bits (19), Expect = 7.1
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                    
Query: 16    tattttatggggaaaatcttggc 38
             |||||| ||||||||||||||||
Sbjct: 51277 tattttctggggaaaatcttggc 51299

>gb|AF248484.1|AF248484 Homo sapiens chromosome 21 PAC 30P13 map 21q11.2, complete sequence,
             containing gene for nuclear factor RIP140
          Length = 148131

 Score = 38.2 bits (19), Expect = 7.1
 Identities = 22/23 (95%)
 Strand = Plus / Minus

                                    
Query: 112   aaaattaaagggaaaagagttga 134
             ||||||||||||||| |||||||
Sbjct: 28466 aaaattaaagggaaatgagttga 28444

>dbj|BS000012.1| Pan troglodytes chromosome 22 clone:PTB-033P20, map 22, complete
             sequences
          Length = 53422

 Score = 38.2 bits (19), Expect = 7.1
 Identities = 22/23 (95%)
 Strand = Plus / Minus

                                    
Query: 112   aaaattaaagggaaaagagttga 134
             ||||||||||||||| |||||||
Sbjct: 43637 aaaattaaagggaaatgagttga 43615

>emb|AL163207.2|HS21C007 Homo sapiens chromosome 21 segment HS21C007
          Length = 340000

 Score = 38.2 bits (19), Expect = 7.1
 Identities = 22/23 (95%)
 Strand = Plus / Minus

                                     
Query: 112    aaaattaaagggaaaagagttga 134
              ||||||||||||||| |||||||
Sbjct: 210478 aaaattaaagggaaatgagttga 210456

>gb|AE001437.1| Clostridium acetobutylicum ATCC 824, complete genome
          Length = 3940880

 Score = 38.2 bits (19), Expect = 7.1
 Identities = 22/23 (95%)
 Strand = Plus / Minus

                                      
Query: 70      cagccatgaaacaaaaacgaact 92
               ||||||||||||||||| |||||
Sbjct: 3226252 cagccatgaaacaaaaatgaact 3226230

>gb|L77992.1|PA4REPA Plasmid pAB49 (from Acinetobacter baumannii) replication protein
           (repA) gene, complete cds
          Length = 2343

 Score = 38.2 bits (19), Expect = 7.1
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                              
Query: 15  atattttatggggaaaatc 33
           |||||||||||||||||||
Sbjct: 953 atattttatggggaaaatc 971

>gb|L14744.1|CLOPHOSBUT Clostridium acetobutylicum phosphotransbutyrylase, complete cds;
            butyrate kinase, complete cds and ORF1
          Length = 3115

 Score = 38.2 bits (19), Expect = 7.1
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                   
Query: 70   cagccatgaaacaaaaacgaact 92
            ||||||||||||||||| |||||
Sbjct: 987  cagccatgaaacaaaaatgaact 1009


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 1,508,553
Number of Sequences: 3902068
Number of extensions: 1508553
Number of successful extensions: 114242
Number of sequences better than 10.0: 28
Number of HSP's better than 10.0 without gapping: 28
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 114133
Number of HSP's gapped (non-prelim): 109
length of query: 148
length of database: 17,233,045,268
effective HSP length: 21
effective length of query: 127
effective length of database: 17,151,101,840
effective search space: 2178189933680
effective search space used: 2178189933680
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 19 (38.2 bits)