Clone Name | rbart60a03 |
---|---|
Clone Library Name | barley_pub |
>dbj|AP007150.1| Aspergillus oryzae RIB40 genomic DNA, SC009 Length = 1913118 Score = 38.2 bits (19), Expect = 0.84 Identities = 19/19 (100%) Strand = Plus / Minus Query: 8 ccatcaattccttgatcaa 26 ||||||||||||||||||| Sbjct: 1073836 ccatcaattccttgatcaa 1073818
>ref|XM_628133.1| Cryptosporidium parvum Iowa II hypothetical protein (cgd1_3170), partial mRNA Length = 4860 Score = 38.2 bits (19), Expect = 0.84 Identities = 19/19 (100%) Strand = Plus / Minus Query: 16 tccttgatcaaatttcaaa 34 ||||||||||||||||||| Sbjct: 1476 tccttgatcaaatttcaaa 1458
>ref|XM_660742.1| Cryptosporidium hominis TU502 hypothetical protein (Chro.40190) partial mRNA Length = 1014 Score = 36.2 bits (18), Expect = 3.3 Identities = 18/18 (100%) Strand = Plus / Plus Query: 14 attccttgatcaaatttc 31 |||||||||||||||||| Sbjct: 849 attccttgatcaaatttc 866
>emb|AL391995.7| Human DNA sequence from clone RP11-522N4 on chromosome 13, complete sequence Length = 178920 Score = 36.2 bits (18), Expect = 3.3 Identities = 18/18 (100%) Strand = Plus / Minus Query: 18 cttgatcaaatttcaaaa 35 |||||||||||||||||| Sbjct: 165531 cttgatcaaatttcaaaa 165514
>emb|AL109915.10|HSDJ120N9 Human DNA sequence from clone RP1-120N9 on chromosome 6q13-15 Contains the SNAP91 gene for synaptosomal-associated protein, 91 kD homolog (mouse) (KIAA0656) and a CpG island, complete sequence Length = 167018 Score = 36.2 bits (18), Expect = 3.3 Identities = 18/18 (100%) Strand = Plus / Minus Query: 14 attccttgatcaaatttc 31 |||||||||||||||||| Sbjct: 76548 attccttgatcaaatttc 76531
>emb|CR925678.1| Ehrlichia ruminantium str. Welgevonden, complete genome Length = 1512977 Score = 36.2 bits (18), Expect = 3.3 Identities = 18/18 (100%) Strand = Plus / Minus Query: 18 cttgatcaaatttcaaaa 35 |||||||||||||||||| Sbjct: 315878 cttgatcaaatttcaaaa 315861
>emb|CR767821.1| Ehrlichia ruminantium strain Welgevonden, complete genome Length = 1516355 Score = 36.2 bits (18), Expect = 3.3 Identities = 18/18 (100%) Strand = Plus / Minus Query: 18 cttgatcaaatttcaaaa 35 |||||||||||||||||| Sbjct: 335885 cttgatcaaatttcaaaa 335868
>ref|XM_625763.1| Cryptosporidium parvum Iowa II putative yeast Brr6p, 2 transmembrane domains and a NFX like finger (cgd4_1680), partial mRNA Length = 1011 Score = 36.2 bits (18), Expect = 3.3 Identities = 18/18 (100%) Strand = Plus / Plus Query: 14 attccttgatcaaatttc 31 |||||||||||||||||| Sbjct: 846 attccttgatcaaatttc 863
>gb|AC147892.2| Xenopus tropicalis clone CH216-35D21, complete sequence Length = 178580 Score = 36.2 bits (18), Expect = 3.3 Identities = 21/22 (95%) Strand = Plus / Minus Query: 9 catcaattccttgatcaaattt 30 |||| ||||||||||||||||| Sbjct: 59154 catccattccttgatcaaattt 59133
>gb|AC159461.1| Mus musculus BAC clone RP23-273I10 from chromosome 13, complete sequence Length = 152402 Score = 36.2 bits (18), Expect = 3.3 Identities = 18/18 (100%) Strand = Plus / Minus Query: 13 aattccttgatcaaattt 30 |||||||||||||||||| Sbjct: 136325 aattccttgatcaaattt 136308
>gb|AC154539.3| Mus musculus BAC clone RP23-452F20 from chromosome 13, complete sequence Length = 176106 Score = 36.2 bits (18), Expect = 3.3 Identities = 18/18 (100%) Strand = Plus / Minus Query: 13 aattccttgatcaaattt 30 |||||||||||||||||| Sbjct: 120627 aattccttgatcaaattt 120610
>gb|AC154241.2| Mus musculus BAC clone RP24-171B8 from 13, complete sequence Length = 158846 Score = 36.2 bits (18), Expect = 3.3 Identities = 18/18 (100%) Strand = Plus / Plus Query: 13 aattccttgatcaaattt 30 |||||||||||||||||| Sbjct: 142719 aattccttgatcaaattt 142736
>emb|AL161669.5|CNS01RHC Human chromosome 14 DNA sequence BAC R-736N17 of library RPCI-11 from chromosome 14 of Homo sapiens (Human), complete sequence Length = 192462 Score = 36.2 bits (18), Expect = 3.3 Identities = 18/18 (100%) Strand = Plus / Minus Query: 10 atcaattccttgatcaaa 27 |||||||||||||||||| Sbjct: 27187 atcaattccttgatcaaa 27170
>emb|AL138976.5|CNS01DWY Human chromosome 14 DNA sequence BAC R-45P15 of library RPCI-11 from chromosome 14 of Homo sapiens (Human), complete sequence Length = 167357 Score = 36.2 bits (18), Expect = 3.3 Identities = 18/18 (100%) Strand = Plus / Plus Query: 10 atcaattccttgatcaaa 27 |||||||||||||||||| Sbjct: 25823 atcaattccttgatcaaa 25840 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 411,072 Number of Sequences: 3902068 Number of extensions: 411072 Number of successful extensions: 93551 Number of sequences better than 10.0: 15 Number of HSP's better than 10.0 without gapping: 15 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 93499 Number of HSP's gapped (non-prelim): 52 length of query: 35 length of database: 17,233,045,268 effective HSP length: 20 effective length of query: 15 effective length of database: 17,155,003,908 effective search space: 257325058620 effective search space used: 257325058620 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 18 (36.2 bits)