ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
Japanese | English
更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbart60a02
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1gb|AC118284.3| Oryza sativa (japonica cultivar-group) chromosome... 161 2e-36
2gb|AC144740.3| Oryza sativa (japonica cultivar-group) chromosome... 161 2e-36
3dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic D... 161 2e-36
4dbj|AK100082.1| Oryza sativa (japonica cultivar-group) cDNA clon... 161 2e-36
5dbj|AK072881.1| Oryza sativa (japonica cultivar-group) cDNA clon... 98 3e-17
6ref|NM_191155.1| Oryza sativa (japonica cultivar-group), predic... 62 1e-06
7dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic D... 62 1e-06
8dbj|AP003768.3| Oryza sativa (japonica cultivar-group) genomic D... 62 1e-06
9dbj|AK120741.1| Oryza sativa (japonica cultivar-group) cDNA clon... 62 1e-06
10dbj|AK119360.1| Oryza sativa (japonica cultivar-group) cDNA clon... 62 1e-06
11dbj|AK109885.1| Oryza sativa (japonica cultivar-group) cDNA clon... 62 1e-06
12ref|NM_187384.1| Oryza sativa (japonica cultivar-group), mRNA 46 0.084
13dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic D... 46 0.084
14dbj|AP004006.5| Oryza sativa (japonica cultivar-group) genomic D... 46 0.084
15ref|XM_476051.1| Oryza sativa (japonica cultivar-group), predic... 44 0.33
16ref|XM_550272.1| Oryza sativa (japonica cultivar-group), mRNA 44 0.33
17gb|AC087553.3| Oryza sativa (japonica cultivar-group) chromosome... 44 0.33
18gb|AF529221.1| Mus musculus putative organic anion transporter 5... 44 0.33
19gb|BC021384.1| Mus musculus solute carrier family 22 (organic an... 44 0.33
20gb|AF408394.1| Mus musculus putative integral membrane transport... 44 0.33
21gb|AC084817.5| Oryza sativa (japonica cultivar-group) chromosome... 44 0.33
22ref|NM_144785.1| Mus musculus solute carrier family 22 (organic ... 44 0.33
23dbj|AK052752.1| Mus musculus 0 day neonate kidney cDNA, RIKEN fu... 44 0.33
24dbj|AK052603.1| Mus musculus 0 day neonate kidney cDNA, RIKEN fu... 44 0.33
25dbj|AP003282.2| Oryza sativa (japonica cultivar-group) genomic D... 44 0.33
26gb|AC130693.15| Mus musculus chromosome 19, clone RP23-385G14, c... 44 0.33
27gb|AC133004.4| Oryza sativa (japonica cultivar-group) chromosome... 42 1.3
28gb|AC098687.3| Bos taurus clone rp42-194o5, complete sequence 42 1.3
29gb|AC096629.11| Bos taurus clone rp42-152a4, complete sequence 42 1.3
30gb|AC098686.11| Bos taurus clone rp42-146c17, complete sequence 42 1.3
31dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic D... 42 1.3
32gb|CP000251.1| Anaeromyxobacter dehalogenans 2CP-C, complete genome 42 1.3
33ref|XM_312397.2| Anopheles gambiae str. PEST ENSANGP00000022193 ... 42 1.3
34dbj|AK060497.1| Oryza sativa (japonica cultivar-group) cDNA clon... 42 1.3
35gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome... 42 1.3
36ref|NM_195670.1| Oryza sativa (japonica cultivar-group) putative... 40 5.2
37ref|NM_192862.1| Oryza sativa (japonica cultivar-group), predic... 40 5.2
38ref|XM_595709.2| PREDICTED: Bos taurus similar to PDZ domain con... 40 5.2
39gb|CP000075.1| Pseudomonas syringae pv. syringae B728a, complete... 40 5.2
40ref|XM_754524.1| Ustilago maydis 521 hypothetical protein (UM034... 40 5.2
41ref|XM_749009.1| Aspergillus fumigatus Af293 hypothetical protei... 40 5.2
42gb|BT009366.1| Triticum aestivum clone wlm96.pk027.m19:fis, full... 40 5.2
43emb|AL590445.1|CNS07EGC chromosome V of strain GB-M1 of Encephal... 40 5.2
44dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic D... 40 5.2
45dbj|AP005633.3| Oryza sativa (japonica cultivar-group) genomic D... 40 5.2
46dbj|AP002819.1| Oryza sativa (japonica cultivar-group) genomic D... 40 5.2
47dbj|AP004500.1| Lotus japonicus genomic DNA, chromosome 1, clone... 40 5.2
48gb|AC099795.2| Homo sapiens chromosome 1 clone RP5-848E13, compl... 40 5.2 
>gb|AC118284.3| Oryza sativa (japonica cultivar-group) chromosome 5 clone OJ1087_C03,
             complete sequence
          Length = 101218

 Score =  161 bits (81), Expect = 2e-36
 Identities = 227/273 (83%), Gaps = 2/273 (0%)
 Strand = Plus / Plus

                                                                         
Query: 119   ctgcagcttggggaggttccagatcgaaggaggaatgctcccggtgaaggcattcgtcga 178
             ||||||||| || | |||||| |||  |||||| ||||| |||||||| | ||||   ||
Sbjct: 95896 ctgcagctttggaatgttccaaatcccaggaggtatgcttccggtgaatgaattctggga 95955

                                                                         
Query: 179   caggtcgagccacaccatctccgacatgtctgtgacgtagctcgggaagtcgccggtgag 238
             |||||||||  || ||||||||  ||| |||||||||||||| ||||| |||||||||||
Sbjct: 95956 caggtcgagatactccatctccatcatctctgtgacgtagctggggaaatcgccggtgag 96015

                                                                         
Query: 239   gttgcag-gcgccaagccagagggtcgtcagcttcgtcaagttcttgaacgaatccggca 297
             ||||||  |||||| ||||||  ||| ||||  |||||||||||||||||||  ||||||
Sbjct: 96016 gttgcactgcgcca-gccagaccgtcttcaggctcgtcaagttcttgaacgatcccggca 96074

                                                                         
Query: 298   gcttgccggcgccgaacgggttcagctcaagcttgagcgtctggaggccagtcagctccc 357
             ||| ||||| |  |||| | |||| ||| ||||||||||||| ||||| ||| ||||| |
Sbjct: 96075 gctcgccgggggtgaactgattcacctcgagcttgagcgtctcgaggctagtgagctcgc 96134

                                              
Query: 358   cgagctccggcgggatcgtgccagtgagctggt 390
             ||||| ||| |||||||||||| ||||||||||
Sbjct: 96135 cgagcgccgccgggatcgtgccggtgagctggt 96167
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>gb|AC144740.3| Oryza sativa (japonica cultivar-group) chromosome 5 clone
             OSJNBa0075A10, complete sequence
          Length = 171101

 Score =  161 bits (81), Expect = 2e-36
 Identities = 227/273 (83%), Gaps = 2/273 (0%)
 Strand = Plus / Plus

                                                                         
Query: 119   ctgcagcttggggaggttccagatcgaaggaggaatgctcccggtgaaggcattcgtcga 178
             ||||||||| || | |||||| |||  |||||| ||||| |||||||| | ||||   ||
Sbjct: 58544 ctgcagctttggaatgttccaaatcccaggaggtatgcttccggtgaatgaattctggga 58603

                                                                         
Query: 179   caggtcgagccacaccatctccgacatgtctgtgacgtagctcgggaagtcgccggtgag 238
             |||||||||  || ||||||||  ||| |||||||||||||| ||||| |||||||||||
Sbjct: 58604 caggtcgagatactccatctccatcatctctgtgacgtagctggggaaatcgccggtgag 58663

                                                                         
Query: 239   gttgcag-gcgccaagccagagggtcgtcagcttcgtcaagttcttgaacgaatccggca 297
             ||||||  |||||| ||||||  ||| ||||  |||||||||||||||||||  ||||||
Sbjct: 58664 gttgcactgcgcca-gccagaccgtcttcaggctcgtcaagttcttgaacgatcccggca 58722

                                                                         
Query: 298   gcttgccggcgccgaacgggttcagctcaagcttgagcgtctggaggccagtcagctccc 357
             ||| ||||| |  |||| | |||| ||| ||||||||||||| ||||| ||| ||||| |
Sbjct: 58723 gctcgccgggggtgaactgattcacctcgagcttgagcgtctcgaggctagtgagctcgc 58782

                                              
Query: 358   cgagctccggcgggatcgtgccagtgagctggt 390
             ||||| ||| |||||||||||| ||||||||||
Sbjct: 58783 cgagcgccgccgggatcgtgccggtgagctggt 58815
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>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete
                sequence
          Length = 29737217

 Score =  161 bits (81), Expect = 2e-36
 Identities = 227/273 (83%), Gaps = 2/273 (0%)
 Strand = Plus / Plus

                                                                            
Query: 119      ctgcagcttggggaggttccagatcgaaggaggaatgctcccggtgaaggcattcgtcga 178
                ||||||||| || | |||||| |||  |||||| ||||| |||||||| | ||||   ||
Sbjct: 25824602 ctgcagctttggaatgttccaaatcccaggaggtatgcttccggtgaatgaattctggga 25824661

                                                                            
Query: 179      caggtcgagccacaccatctccgacatgtctgtgacgtagctcgggaagtcgccggtgag 238
                |||||||||  || ||||||||  ||| |||||||||||||| ||||| |||||||||||
Sbjct: 25824662 caggtcgagatactccatctccatcatctctgtgacgtagctggggaaatcgccggtgag 25824721

                                                                            
Query: 239      gttgcag-gcgccaagccagagggtcgtcagcttcgtcaagttcttgaacgaatccggca 297
                ||||||  |||||| ||||||  ||| ||||  |||||||||||||||||||  ||||||
Sbjct: 25824722 gttgcactgcgcca-gccagaccgtcttcaggctcgtcaagttcttgaacgatcccggca 25824780

                                                                            
Query: 298      gcttgccggcgccgaacgggttcagctcaagcttgagcgtctggaggccagtcagctccc 357
                ||| ||||| |  |||| | |||| ||| ||||||||||||| ||||| ||| ||||| |
Sbjct: 25824781 gctcgccgggggtgaactgattcacctcgagcttgagcgtctcgaggctagtgagctcgc 25824840

                                                 
Query: 358      cgagctccggcgggatcgtgccagtgagctggt 390
                ||||| ||| |||||||||||| ||||||||||
Sbjct: 25824841 cgagcgccgccgggatcgtgccggtgagctggt 25824873



 Score = 44.1 bits (22), Expect = 0.33
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                         
Query: 350     cagctccccgagctccggcgggatcg 375
               |||||| |||||||||||||||||||
Sbjct: 4114234 cagctcgccgagctccggcgggatcg 4114209
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>dbj|AK100082.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023002E24, full
           insert sequence
          Length = 3293

 Score =  161 bits (81), Expect = 2e-36
 Identities = 227/273 (83%), Gaps = 2/273 (0%)
 Strand = Plus / Minus

                                                                       
Query: 119 ctgcagcttggggaggttccagatcgaaggaggaatgctcccggtgaaggcattcgtcga 178
           ||||||||| || | |||||| |||  |||||| ||||| |||||||| | ||||   ||
Sbjct: 897 ctgcagctttggaatgttccaaatcccaggaggtatgcttccggtgaatgaattctggga 838

                                                                       
Query: 179 caggtcgagccacaccatctccgacatgtctgtgacgtagctcgggaagtcgccggtgag 238
           |||||||||  || ||||||||  ||| |||||||||||||| ||||| |||||||||||
Sbjct: 837 caggtcgagatactccatctccatcatctctgtgacgtagctggggaaatcgccggtgag 778

                                                                       
Query: 239 gttgcag-gcgccaagccagagggtcgtcagcttcgtcaagttcttgaacgaatccggca 297
           ||||||  |||||| ||||||  ||| ||||  |||||||||||||||||||  ||||||
Sbjct: 777 gttgcactgcgcca-gccagaccgtcttcaggctcgtcaagttcttgaacgatcccggca 719

                                                                       
Query: 298 gcttgccggcgccgaacgggttcagctcaagcttgagcgtctggaggccagtcagctccc 357
           ||| ||||| |  |||| | |||| ||| ||||||||||||| ||||| ||| ||||| |
Sbjct: 718 gctcgccgggggtgaactgattcacctcgagcttgagcgtctcgaggctagtgagctcgc 659

                                            
Query: 358 cgagctccggcgggatcgtgccagtgagctggt 390
           ||||| ||| |||||||||||| ||||||||||
Sbjct: 658 cgagcgccgccgggatcgtgccggtgagctggt 626
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>dbj|AK072881.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023148N15, full
           insert sequence
          Length = 636

 Score = 97.6 bits (49), Expect = 3e-17
 Identities = 156/189 (82%), Gaps = 2/189 (1%)
 Strand = Plus / Minus

                                                                       
Query: 119 ctgcagcttggggaggttccagatcgaaggaggaatgctcccggtgaaggcattcgtcga 178
           ||||||||| || | |||||| |||  |||||| ||||| |||||||| | ||||   ||
Sbjct: 204 ctgcagctttggaatgttccaaatcccaggaggtatgcttccggtgaatgaattctggga 145

                                                                       
Query: 179 caggtcgagccacaccatctccgacatgtctgtgacgtagctcgggaagtcgccggtgag 238
           |||||||||  || ||||||||  ||| |||||||||||||| ||||| |||| ||||||
Sbjct: 144 caggtcgagatactccatctccatcatctctgtgacgtagctggggaaatcgctggtgag 85

                                                                       
Query: 239 gttgca-ggcgccaagccagagggtcgtcagcttcgtcaagttcttgaacgaatccggca 297
           ||||||  ||||| |||||||  ||| ||||  |||||||||||||||||||  ||||||
Sbjct: 84  gttgcactgcgcc-agccagaccgtcttcaggctcgtcaagttcttgaacgatcccggca 26

                    
Query: 298 gcttgccgg 306
           ||| |||||
Sbjct: 25  gctcgccgg 17
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>ref|NM_191155.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 3192

 Score = 61.9 bits (31), Expect = 1e-06
 Identities = 43/47 (91%)
 Strand = Plus / Minus

                                                          
Query: 254 ccagagggtcgtcagcttcgtcaagttcttgaacgaatccggcagct 300
           ||||||||| |||||||| |||| |||||||||||| ||||||||||
Sbjct: 684 ccagagggttgtcagcttagtcaggttcttgaacgactccggcagct 638
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>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
                sequence
          Length = 43261740

 Score = 61.9 bits (31), Expect = 1e-06
 Identities = 43/47 (91%)
 Strand = Plus / Minus

                                                               
Query: 254      ccagagggtcgtcagcttcgtcaagttcttgaacgaatccggcagct 300
                ||||||||| |||||||| |||| |||||||||||| ||||||||||
Sbjct: 31000048 ccagagggttgtcagcttagtcaggttcttgaacgactccggcagct 31000002



 Score = 44.1 bits (22), Expect = 0.33
 Identities = 31/34 (91%)
 Strand = Plus / Minus

                                                 
Query: 357     ccgagctccggcgggatcgtgccagtgagctggt 390
               |||| |||||||||||| ||||| ||||||||||
Sbjct: 3621766 ccgatctccggcgggatggtgccggtgagctggt 3621733



 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 356      cccgagctccggcgggatcg 375
                ||||||||||||||||||||
Sbjct: 24852984 cccgagctccggcgggatcg 24853003
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>dbj|AP003768.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
             clone:P0439E07
          Length = 176486

 Score = 61.9 bits (31), Expect = 1e-06
 Identities = 43/47 (91%)
 Strand = Plus / Minus

                                                            
Query: 254   ccagagggtcgtcagcttcgtcaagttcttgaacgaatccggcagct 300
             ||||||||| |||||||| |||| |||||||||||| ||||||||||
Sbjct: 57027 ccagagggttgtcagcttagtcaggttcttgaacgactccggcagct 56981
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>dbj|AK120741.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023003P18, full
           insert sequence
          Length = 3613

 Score = 61.9 bits (31), Expect = 1e-06
 Identities = 43/47 (91%)
 Strand = Plus / Minus

                                                          
Query: 254 ccagagggtcgtcagcttcgtcaagttcttgaacgaatccggcagct 300
           ||||||||| |||||||| |||| |||||||||||| ||||||||||
Sbjct: 763 ccagagggttgtcagcttagtcaggttcttgaacgactccggcagct 717
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>dbj|AK119360.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-131-G06, full
           insert sequence
          Length = 2885

 Score = 61.9 bits (31), Expect = 1e-06
 Identities = 43/47 (91%)
 Strand = Plus / Minus

                                                          
Query: 254 ccagagggtcgtcagcttcgtcaagttcttgaacgaatccggcagct 300
           ||||||||| |||||||| |||| |||||||||||| ||||||||||
Sbjct: 765 ccagagggttgtcagcttagtcaggttcttgaacgactccggcagct 719
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>dbj|AK109885.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-149-D10, full
           insert sequence
          Length = 1500

 Score = 61.9 bits (31), Expect = 1e-06
 Identities = 43/47 (91%)
 Strand = Plus / Minus

                                                          
Query: 254 ccagagggtcgtcagcttcgtcaagttcttgaacgaatccggcagct 300
           ||||||||| |||||||| |||| |||||||||||| ||||||||||
Sbjct: 761 ccagagggttgtcagcttagtcaggttcttgaacgactccggcagct 715
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>ref|NM_187384.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 3825

 Score = 46.1 bits (23), Expect = 0.084
 Identities = 32/35 (91%)
 Strand = Plus / Minus

                                              
Query: 356 cccgagctccggcgggatcgtgccagtgagctggt 390
           |||||||||||||||||||  ||| ||||||||||
Sbjct: 732 cccgagctccggcgggatcacgccggtgagctggt 698
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>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete
                sequence
          Length = 29644043

 Score = 46.1 bits (23), Expect = 0.084
 Identities = 32/35 (91%)
 Strand = Plus / Plus

                                                   
Query: 356      cccgagctccggcgggatcgtgccagtgagctggt 390
                |||||||||||||||||||  ||| ||||||||||
Sbjct: 18637995 cccgagctccggcgggatcacgccggtgagctggt 18638029
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>dbj|AP004006.5| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC
             clone:OJ1197_D06
          Length = 103844

 Score = 46.1 bits (23), Expect = 0.084
 Identities = 32/35 (91%)
 Strand = Plus / Plus

                                                
Query: 356   cccgagctccggcgggatcgtgccagtgagctggt 390
             |||||||||||||||||||  ||| ||||||||||
Sbjct: 63049 cccgagctccggcgggatcacgccggtgagctggt 63083
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>ref|XM_476051.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 3372

 Score = 44.1 bits (22), Expect = 0.33
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                     
Query: 350 cagctccccgagctccggcgggatcg 375
           |||||| |||||||||||||||||||
Sbjct: 366 cagctcgccgagctccggcgggatcg 341
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>ref|XM_550272.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 3354

 Score = 44.1 bits (22), Expect = 0.33
 Identities = 31/34 (91%)
 Strand = Plus / Minus

                                              
Query: 357  ccgagctccggcgggatcgtgccagtgagctggt 390
            |||| |||||||||||| ||||| ||||||||||
Sbjct: 1244 ccgatctccggcgggatggtgccggtgagctggt 1211
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>gb|AC087553.3| Oryza sativa (japonica cultivar-group) chromosome 5 clone P0685E10,
           complete sequence
          Length = 156772

 Score = 44.1 bits (22), Expect = 0.33
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                     
Query: 350 cagctccccgagctccggcgggatcg 375
           |||||| |||||||||||||||||||
Sbjct: 713 cagctcgccgagctccggcgggatcg 688
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>gb|AF529221.1| Mus musculus putative organic anion transporter 5 mRNA, complete
           cds
          Length = 1913

 Score = 44.1 bits (22), Expect = 0.33
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                 
Query: 121 gcagcttggggaggttccagat 142
           ||||||||||||||||||||||
Sbjct: 78  gcagcttggggaggttccagat 99
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>gb|BC021384.1| Mus musculus solute carrier family 22 (organic anion transporter),
           member 19, mRNA (cDNA clone MGC:29260 IMAGE:5064542),
           complete cds
          Length = 1964

 Score = 44.1 bits (22), Expect = 0.33
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                 
Query: 121 gcagcttggggaggttccagat 142
           ||||||||||||||||||||||
Sbjct: 115 gcagcttggggaggttccagat 136
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>gb|AF408394.1| Mus musculus putative integral membrane transport protein UST1R
           mRNA, complete cds
          Length = 1838

 Score = 44.1 bits (22), Expect = 0.33
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                 
Query: 121 gcagcttggggaggttccagat 142
           ||||||||||||||||||||||
Sbjct: 134 gcagcttggggaggttccagat 155
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>gb|AC084817.5| Oryza sativa (japonica cultivar-group) chromosome 5 clone P0419C04,
             complete sequence
          Length = 136713

 Score = 44.1 bits (22), Expect = 0.33
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                       
Query: 350   cagctccccgagctccggcgggatcg 375
             |||||| |||||||||||||||||||
Sbjct: 88928 cagctcgccgagctccggcgggatcg 88903
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>ref|NM_144785.1| Mus musculus solute carrier family 22 (organic anion transporter),
           member 19 (Slc22a19), mRNA
          Length = 1964

 Score = 44.1 bits (22), Expect = 0.33
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                 
Query: 121 gcagcttggggaggttccagat 142
           ||||||||||||||||||||||
Sbjct: 115 gcagcttggggaggttccagat 136
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>dbj|AK052752.1| Mus musculus 0 day neonate kidney cDNA, RIKEN full-length enriched
           library, clone:D630043A20 product:solute carrier family
           22 (organic anion transporter), member 19, full insert
           sequence
          Length = 1854

 Score = 44.1 bits (22), Expect = 0.33
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                 
Query: 121 gcagcttggggaggttccagat 142
           ||||||||||||||||||||||
Sbjct: 119 gcagcttggggaggttccagat 140
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>dbj|AK052603.1| Mus musculus 0 day neonate kidney cDNA, RIKEN full-length enriched
           library, clone:D630003H14 product:solute carrier family
           22 (organic cation transporter), member 19, full insert
           sequence
          Length = 3574

 Score = 44.1 bits (22), Expect = 0.33
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                 
Query: 121 gcagcttggggaggttccagat 142
           ||||||||||||||||||||||
Sbjct: 149 gcagcttggggaggttccagat 170
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>dbj|AP003282.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
             clone:P0583G08
          Length = 135295

 Score = 44.1 bits (22), Expect = 0.33
 Identities = 31/34 (91%)
 Strand = Plus / Minus

                                               
Query: 357   ccgagctccggcgggatcgtgccagtgagctggt 390
             |||| |||||||||||| ||||| ||||||||||
Sbjct: 30246 ccgatctccggcgggatggtgccggtgagctggt 30213
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>gb|AC130693.15| Mus musculus chromosome 19, clone RP23-385G14, complete sequence
          Length = 184943

 Score = 44.1 bits (22), Expect = 0.33
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                   
Query: 121   gcagcttggggaggttccagat 142
             ||||||||||||||||||||||
Sbjct: 67188 gcagcttggggaggttccagat 67167
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>gb|AC133004.4| Oryza sativa (japonica cultivar-group) chromosome 11 clone
             OSJNBa0046F10, complete sequence
          Length = 184041

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 33/37 (89%)
 Strand = Plus / Plus

                                                  
Query: 350   cagctccccgagctccggcgggatcgtgccagtgagc 386
             ||||| |||||||||||||||||| | ||| ||||||
Sbjct: 65432 cagcttcccgagctccggcgggatggcgccggtgagc 65468
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>gb|AC098687.3| Bos taurus clone rp42-194o5, complete sequence
          Length = 156543

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                           
Query: 111    tacagcacctgcagcttggggaggttcca 139
              |||||||| |||| |||||||||||||||
Sbjct: 149189 tacagcacatgcatcttggggaggttcca 149161
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>gb|AC096629.11| Bos taurus clone rp42-152a4, complete sequence
          Length = 191756

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                          
Query: 111   tacagcacctgcagcttggggaggttcca 139
             |||||||| |||| |||||||||||||||
Sbjct: 94585 tacagcacatgcatcttggggaggttcca 94557
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>gb|AC098686.11| Bos taurus clone rp42-146c17, complete sequence
          Length = 164686

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 27/29 (93%)
 Strand = Plus / Plus

                                          
Query: 111   tacagcacctgcagcttggggaggttcca 139
             |||||||| |||| |||||||||||||||
Sbjct: 26948 tacagcacatgcatcttggggaggttcca 26976
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>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete
                sequence
          Length = 28386948

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 33/37 (89%)
 Strand = Plus / Minus

                                                     
Query: 350      cagctccccgagctccggcgggatcgtgccagtgagc 386
                ||||| |||||||||||||||||| | ||| ||||||
Sbjct: 11112178 cagcttcccgagctccggcgggatggcgccggtgagc 11112142
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>gb|CP000251.1| Anaeromyxobacter dehalogenans 2CP-C, complete genome
          Length = 5013479

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                    
Query: 295     gcagcttgccggcgccgaacg 315
               |||||||||||||||||||||
Sbjct: 3454064 gcagcttgccggcgccgaacg 3454044
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>ref|XM_312397.2| Anopheles gambiae str. PEST ENSANGP00000022193
           (ENSANGG00000019704), partial mRNA
          Length = 1167

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                    
Query: 349 tcagctccccgagctccggcgggat 373
           |||||||| ||||||||||||||||
Sbjct: 73  tcagctcctcgagctccggcgggat 49
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>dbj|AK060497.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-016-G05, full
           insert sequence
          Length = 1719

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 33/37 (89%)
 Strand = Plus / Minus

                                                
Query: 350 cagctccccgagctccggcgggatcgtgccagtgagc 386
           ||||| |||||||||||||||||| | ||| ||||||
Sbjct: 687 cagcttcccgagctccggcgggatggcgccggtgagc 651
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>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence
          Length = 28369397

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 33/37 (89%)
 Strand = Plus / Minus

                                                     
Query: 350      cagctccccgagctccggcgggatcgtgccagtgagc 386
                ||||| |||||||||||||||||| | ||| ||||||
Sbjct: 11191367 cagcttcccgagctccggcgggatggcgccggtgagc 11191331
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>ref|NM_195670.1| Oryza sativa (japonica cultivar-group) putative glucosyltransferase
           (OSJNAa0053D03.20), mRNA
          Length = 549

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 61  cgatggcgccattgatgacgacgt 84
           |||||||| |||||||||||||||
Sbjct: 519 cgatggcgtcattgatgacgacgt 542
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>ref|NM_192862.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 1485

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 356 cccgagctccggcgggatcg 375
           ||||||||||||||||||||
Sbjct: 549 cccgagctccggcgggatcg 530
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>ref|XM_595709.2| PREDICTED: Bos taurus similar to PDZ domain containing 10
            (LOC517537), mRNA
          Length = 5364

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 194  catctccgacatgtctgtga 213
            ||||||||||||||||||||
Sbjct: 2502 catctccgacatgtctgtga 2483
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>gb|CP000075.1| Pseudomonas syringae pv. syringae B728a, complete genome
          Length = 6093698

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                           
Query: 296     cagcttgccggcgccgaacgggttcagc 323
               ||||||||||| |||||||| |||||||
Sbjct: 5683705 cagcttgccggtgccgaacgtgttcagc 5683678
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>ref|XM_754524.1| Ustilago maydis 521 hypothetical protein (UM03470.1) partial mRNA
          Length = 3918

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 113  cagcacctgcagcttgggga 132
            ||||||||||||||||||||
Sbjct: 2532 cagcacctgcagcttgggga 2513
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>ref|XM_749009.1| Aspergillus fumigatus Af293 hypothetical protein (Afu3g15220)
           partial mRNA
          Length = 1242

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 266 cagcttcgtcaagttcttga 285
           ||||||||||||||||||||
Sbjct: 93  cagcttcgtcaagttcttga 74
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>gb|BT009366.1| Triticum aestivum clone wlm96.pk027.m19:fis, full insert mRNA
            sequence
          Length = 1968

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 302  gccggcgccgaacgggttca 321
            ||||||||||||||||||||
Sbjct: 1449 gccggcgccgaacgggttca 1468
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>emb|AL590445.1|CNS07EGC chromosome V of strain GB-M1 of Encephalitozoon cuniculi (Microspora)
          Length = 211018

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 351   agctccccgagctccggcgg 370
             ||||||||||||||||||||
Sbjct: 89536 agctccccgagctccggcgg 89517
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>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete
                sequence
          Length = 22696651

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 29/32 (90%)
 Strand = Plus / Minus

                                                
Query: 359      gagctccggcgggatcgtgccagtgagctggt 390
                ||||||||||||||| | ||| ||||||||||
Sbjct: 18322216 gagctccggcgggatggcgccggtgagctggt 18322185
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>dbj|AP005633.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, PAC
             clone:P0463G11
          Length = 154188

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 29/32 (90%)
 Strand = Plus / Minus

                                             
Query: 359   gagctccggcgggatcgtgccagtgagctggt 390
             ||||||||||||||| | ||| ||||||||||
Sbjct: 36952 gagctccggcgggatggcgccggtgagctggt 36921
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>dbj|AP002819.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
             clone:P0501G01
          Length = 154561

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 356   cccgagctccggcgggatcg 375
             ||||||||||||||||||||
Sbjct: 76104 cccgagctccggcgggatcg 76123
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>dbj|AP004500.1| Lotus japonicus genomic DNA, chromosome 1, clone:LjT05P21, TM0032,
             complete sequence
          Length = 106632

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 354   tccccgagctccggcgggat 373
             ||||||||||||||||||||
Sbjct: 72621 tccccgagctccggcgggat 72602
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>gb|AC099795.2| Homo sapiens chromosome 1 clone RP5-848E13, complete sequence
          Length = 120556

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 233   ggtgaggttgcaggcgccaagcca 256
             ||||||||||||||| ||||||||
Sbjct: 62023 ggtgaggttgcaggccccaagcca 62046


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2,254,077
Number of Sequences: 3902068
Number of extensions: 2254077
Number of successful extensions: 44927
Number of sequences better than 10.0: 48
Number of HSP's better than 10.0 without gapping: 51
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 44477
Number of HSP's gapped (non-prelim): 445
length of query: 390
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 368
effective length of database: 17,147,199,772
effective search space: 6310169516096
effective search space used: 6310169516096
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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