ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbart59h11
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1gb|AC023722.4| Drosophila melanogaster X BAC RP98-48O24 (Roswell... 48 0.013
2gb|AC023699.4| Drosophila melanogaster X BAC RP98-11K20 (Roswell... 48 0.013
3gb|AE003438.3| Drosophila melanogaster chromosome X, section 22 ... 48 0.013
4gb|AC102626.9| Mus musculus chromosome 12, clone RP23-456E21, co... 44 0.20
5gb|AC092228.1|AC092228 Drosophila melanogaster, chromosome 2L, r... 44 0.20
6gb|AE003644.4| Drosophila melanogaster chromosome 2L, section 53... 44 0.20
7emb|CT025710.9| Mouse DNA sequence from clone RP23-261P14 on chr... 44 0.20
8emb|AL161786.12| Human DNA sequence from clone RP11-344L17 on ch... 42 0.80
9gb|AC010212.10| Drosophila melanogaster clone BACR32D05, complet... 40 3.1
10emb|BX957246.7| Zebrafish DNA sequence from clone CH211-89F7 in ... 40 3.1
11gb|AC092422.3| Homo sapiens chromosome 3 clone RP11-537O8, compl... 40 3.1
12emb|BX323078.8| Zebrafish DNA sequence from clone DKEYP-55A5 in ... 40 3.1
13emb|BX664629.10| Zebrafish DNA sequence from clone DKEY-30G10 in... 40 3.1
14emb|BX569795.5| Zebrafish DNA sequence from clone CH211-206A19 i... 40 3.1
15gb|AE003675.4| Drosophila melanogaster chromosome 3R, section 9 ... 40 3.1
16emb|BX649554.17| Zebrafish DNA sequence from clone DKEYP-71F10 i... 40 3.1

>gb|AC023722.4| Drosophila melanogaster X BAC RP98-48O24 (Roswell Park Cancer Institute
             Drosophila BAC Library) complete sequence
          Length = 191590

 Score = 48.1 bits (24), Expect = 0.013
 Identities = 24/24 (100%)
 Strand = Plus / Minus

                                     
Query: 8     gaactcaactcaactcagctgaac 31
             ||||||||||||||||||||||||
Sbjct: 21312 gaactcaactcaactcagctgaac 21289



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>gb|AC023699.4| Drosophila melanogaster X BAC RP98-11K20 (Roswell Park Cancer Institute
              Drosophila BAC Library) complete sequence
          Length = 177941

 Score = 48.1 bits (24), Expect = 0.013
 Identities = 24/24 (100%)
 Strand = Plus / Minus

                                      
Query: 8      gaactcaactcaactcagctgaac 31
              ||||||||||||||||||||||||
Sbjct: 125416 gaactcaactcaactcagctgaac 125393



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>gb|AE003438.3| Drosophila melanogaster chromosome X, section 22 of 74 of the complete
              sequence
          Length = 299943

 Score = 48.1 bits (24), Expect = 0.013
 Identities = 24/24 (100%)
 Strand = Plus / Minus

                                      
Query: 8      gaactcaactcaactcagctgaac 31
              ||||||||||||||||||||||||
Sbjct: 167303 gaactcaactcaactcagctgaac 167280



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>gb|AC102626.9| Mus musculus chromosome 12, clone RP23-456E21, complete sequence
          Length = 222905

 Score = 44.1 bits (22), Expect = 0.20
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                       
Query: 6     ctgaactcaactcaactcagctgaac 31
             |||||||||||| |||||||||||||
Sbjct: 82835 ctgaactcaactgaactcagctgaac 82860



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>gb|AC092228.1|AC092228 Drosophila melanogaster, chromosome 2L, region 35X-35X, BAC clone
              BACR21J17, complete sequence
          Length = 174974

 Score = 44.1 bits (22), Expect = 0.20
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                    
Query: 6      ctgaactcaactcaactcagct 27
              ||||||||||||||||||||||
Sbjct: 146228 ctgaactcaactcaactcagct 146249



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>gb|AE003644.4| Drosophila melanogaster chromosome 2L, section 53 of 83 of the complete
             sequence
          Length = 263306

 Score = 44.1 bits (22), Expect = 0.20
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                   
Query: 6     ctgaactcaactcaactcagct 27
             ||||||||||||||||||||||
Sbjct: 38068 ctgaactcaactcaactcagct 38089



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>emb|CT025710.9| Mouse DNA sequence from clone RP23-261P14 on chromosome 12, complete
              sequence
          Length = 225685

 Score = 44.1 bits (22), Expect = 0.20
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                        
Query: 6      ctgaactcaactcaactcagctgaac 31
              |||||||||||| |||||||||||||
Sbjct: 191923 ctgaactcaactgaactcagctgaac 191948



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>emb|AL161786.12| Human DNA sequence from clone RP11-344L17 on chromosome 9 Contains the 5'
              end of a novel gene (MGC20553), complete sequence
          Length = 145676

 Score = 42.1 bits (21), Expect = 0.80
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 77     ttctcagagtatgcacaccaa 97
              |||||||||||||||||||||
Sbjct: 100378 ttctcagagtatgcacaccaa 100358



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>gb|AC010212.10| Drosophila melanogaster clone BACR32D05, complete sequence
          Length = 161579

 Score = 40.1 bits (20), Expect = 3.1
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 13    caactcaactcagctgaacacatt 36
             ||||||||||||||||||| ||||
Sbjct: 48867 caactcaactcagctgaactcatt 48890



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>emb|BX957246.7| Zebrafish DNA sequence from clone CH211-89F7 in linkage group 5, complete
              sequence
          Length = 186135

 Score = 40.1 bits (20), Expect = 3.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 194    ctctctctgactgactgaca 213
              ||||||||||||||||||||
Sbjct: 159959 ctctctctgactgactgaca 159978



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>gb|AC092422.3| Homo sapiens chromosome 3 clone RP11-537O8, complete sequence
          Length = 188643

 Score = 40.1 bits (20), Expect = 3.1
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 29    aacacattacattttacatcccct 52
             |||||||||||||| |||||||||
Sbjct: 30063 aacacattacatttcacatcccct 30040



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>emb|BX323078.8| Zebrafish DNA sequence from clone DKEYP-55A5 in linkage group 3,
            complete sequence
          Length = 174108

 Score = 40.1 bits (20), Expect = 3.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 29   aacacattacattttacatc 48
            ||||||||||||||||||||
Sbjct: 6468 aacacattacattttacatc 6487



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>emb|BX664629.10| Zebrafish DNA sequence from clone DKEY-30G10 in linkage group 22,
              complete sequence
          Length = 256437

 Score = 40.1 bits (20), Expect = 3.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 5      tctgaactcaactcaactca 24
              ||||||||||||||||||||
Sbjct: 143459 tctgaactcaactcaactca 143440



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>emb|BX569795.5| Zebrafish DNA sequence from clone CH211-206A19 in linkage group 22,
              complete sequence
          Length = 162622

 Score = 40.1 bits (20), Expect = 3.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 5      tctgaactcaactcaactca 24
              ||||||||||||||||||||
Sbjct: 158001 tctgaactcaactcaactca 158020



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>gb|AE003675.4| Drosophila melanogaster chromosome 3R, section 9 of 118 of the complete
             sequence
          Length = 145958

 Score = 40.1 bits (20), Expect = 3.1
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 13    caactcaactcagctgaacacatt 36
             ||||||||||||||||||| ||||
Sbjct: 87336 caactcaactcagctgaactcatt 87359



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>emb|BX649554.17| Zebrafish DNA sequence from clone DKEYP-71F10 in linkage group 3,
             complete sequence
          Length = 99813

 Score = 40.1 bits (20), Expect = 3.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 29    aacacattacattttacatc 48
             ||||||||||||||||||||
Sbjct: 90284 aacacattacattttacatc 90303


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 1,826,911
Number of Sequences: 3902068
Number of extensions: 1826911
Number of successful extensions: 36596
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 36564
Number of HSP's gapped (non-prelim): 32
length of query: 244
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 222
effective length of database: 17,147,199,772
effective search space: 3806678349384
effective search space used: 3806678349384
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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