ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
Japanese | English
更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbart59h09
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1BCSA_ECOLI (P37653) Cellulose synthase catalytic subunit [UDP-fo... 28 8.2
2BCSA_ECO57 (Q8X5L7) Cellulose synthase catalytic subunit [UDP-fo... 28 8.2

>BCSA_ECOLI (P37653) Cellulose synthase catalytic subunit [UDP-forming] (EC|
           2.4.1.12)
          Length = 872

 Score = 27.7 bits (60), Expect = 8.2
 Identities = 10/22 (45%), Positives = 15/22 (68%)
 Frame = -2

Query: 220 SVDAYVPLFSRDMNTFKNCCYS 155
           SVD +VP ++ D+N  KN  Y+
Sbjct: 274 SVDIFVPTYNEDLNVVKNTIYA 295



to top

>BCSA_ECO57 (Q8X5L7) Cellulose synthase catalytic subunit [UDP-forming] (EC|
           2.4.1.12)
          Length = 872

 Score = 27.7 bits (60), Expect = 8.2
 Identities = 10/22 (45%), Positives = 15/22 (68%)
 Frame = -2

Query: 220 SVDAYVPLFSRDMNTFKNCCYS 155
           SVD +VP ++ D+N  KN  Y+
Sbjct: 274 SVDIFVPTYNEDLNVVKNTIYA 295


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 30,901,938
Number of Sequences: 219361
Number of extensions: 475816
Number of successful extensions: 1500
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 1490
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1500
length of database: 80,573,946
effective HSP length: 58
effective length of database: 67,851,008
effective search space used: 1628424192
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
to top