ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbart59h09 |
|---|---|
| Clone Library Name | barley_pub |
>gb|AY228552.1| Hordeum vulgare agmatine coumaroyltransferase (ACT) mRNA, complete cds Length = 1508 Score = 452 bits (228), Expect = e-124 Identities = 243/248 (97%) Strand = Plus / Minus Query: 1 gaaagattaaaacttcgttgatgggctcttccaaaacagaatggataattgaatcaagaa 60 ||||||||||||||||||| || ||||||||||||||||||||||||||||||||||| Sbjct: 1472 gaaagattaaaacttcgtttatttactcttccaaaacagaatggataattgaatcaagaa 1413 Query: 61 cttcaaaaatagaactaggcaagtggctaacgttgatccgacaccaggcacacattggca 120 ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1412 cttcaaaaataaaactaggcaagtggctaacgttgatccgacaccaggcacacattggca 1353 Query: 121 catggcaggtacgtgcaaacgggacctagtcgaggctgtagcagcagttcttgaaggtgt 180 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1352 catggcaggtacgtgcaaacgggacctagtcgaggctgtagcagcagttcttgaaggtgt 1293 Query: 181 tcatgtcgcggctaaagagtggcacgtaggcgtccacgctgccgtcgcccaagaaagacg 240 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1292 tcatgtcgcggctaaagagtggcacgtaggcgtccacgctgccgtcgcccaagaaagacg 1233 Query: 241 gcagcagg 248 |||||||| Sbjct: 1232 gcagcagg 1225
>gb|AY234333.1| Triticum aestivum putative agmatine coumaroyltransferase mRNA, partial cds Length = 1220 Score = 196 bits (99), Expect = 2e-47 Identities = 146/159 (91%), Gaps = 2/159 (1%) Strand = Plus / Minus Query: 90 acgttgatccgacaccaggcacacattggcacatggcaggtacgtgcaaacgggacctag 149 |||| |||||||||||| ||||||||| |||| |||||||||||| ||| ||| | |||| Sbjct: 1116 acgtcgatccgacaccacgcacacatttgcacttggcaggtacgt-caagcgg-agctag 1059 Query: 150 tcgaggctgtagcagcagttcttgaaggtgttcatgtcgcggctaaagagtggcacgtag 209 |||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||| Sbjct: 1058 tcgagggtgtagcagcagttcttgaaagtgttcatgtcgcggctaaagagtggcacgtag 999 Query: 210 gcgtccacgctgccgtcgcccaagaaagacggcagcagg 248 ||| |||||||||||||||||||||| ||||| |||||| Sbjct: 998 gcgcccacgctgccgtcgcccaagaaggacggtagcagg 960 Score = 67.9 bits (34), Expect = 1e-08 Identities = 37/38 (97%) Strand = Plus / Minus Query: 47 aattgaatcaagaacttcaaaaatagaactaggcaagt 84 ||||||||||||||||||||||||| |||||||||||| Sbjct: 1188 aattgaatcaagaacttcaaaaatacaactaggcaagt 1151
>ref|XM_474243.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 1293 Score = 117 bits (59), Expect = 2e-23 Identities = 83/91 (91%) Strand = Plus / Minus Query: 158 gtagcagcagttcttgaaggtgttcatgtcgcggctaaagagtggcacgtaggcgtccac 217 ||||||||||||||||||| || |||||||||||| |||||||||||||| ||||| || Sbjct: 1257 gtagcagcagttcttgaagacgtccatgtcgcggctgaagagtggcacgtacgcgtcaac 1198 Query: 218 gctgccgtcgcccaagaaagacggcagcagg 248 ||| |||||||| |||||||||||||||||| Sbjct: 1197 gctcccgtcgccgaagaaagacggcagcagg 1167
>emb|AL606646.3|OSJN00091 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0087O24, complete sequence Length = 146168 Score = 117 bits (59), Expect = 2e-23 Identities = 83/91 (91%) Strand = Plus / Minus Query: 158 gtagcagcagttcttgaaggtgttcatgtcgcggctaaagagtggcacgtaggcgtccac 217 ||||||||||||||||||| || |||||||||||| |||||||||||||| ||||| || Sbjct: 11597 gtagcagcagttcttgaagacgtccatgtcgcggctgaagagtggcacgtacgcgtcaac 11538 Query: 218 gctgccgtcgcccaagaaagacggcagcagg 248 ||| |||||||| |||||||||||||||||| Sbjct: 11537 gctcccgtcgccgaagaaagacggcagcagg 11507 Score = 115 bits (58), Expect = 7e-23 Identities = 79/86 (91%) Strand = Plus / Plus Query: 159 tagcagcagttcttgaaggtgttcatgtcgcggctaaagagtggcacgtaggcgtccacg 218 |||||||||||||||||||||| ||||||| |||| |||||||||||||||||||| ||| Sbjct: 13909 tagcagcagttcttgaaggtgtccatgtcgtggctgaagagtggcacgtaggcgtcgacg 13968 Query: 219 ctgccgtcgcccaagaaagacggcag 244 ||||||||||| ||||||| ||||| Sbjct: 13969 ctgccgtcgccggagaaagatggcag 13994
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete sequence Length = 35498469 Score = 117 bits (59), Expect = 2e-23 Identities = 83/91 (91%) Strand = Plus / Minus Query: 158 gtagcagcagttcttgaaggtgttcatgtcgcggctaaagagtggcacgtaggcgtccac 217 ||||||||||||||||||| || |||||||||||| |||||||||||||| ||||| || Sbjct: 33960700 gtagcagcagttcttgaagacgtccatgtcgcggctgaagagtggcacgtacgcgtcaac 33960641 Query: 218 gctgccgtcgcccaagaaagacggcagcagg 248 ||| |||||||| |||||||||||||||||| Sbjct: 33960640 gctcccgtcgccgaagaaagacggcagcagg 33960610 Score = 115 bits (58), Expect = 7e-23 Identities = 79/86 (91%) Strand = Plus / Plus Query: 159 tagcagcagttcttgaaggtgttcatgtcgcggctaaagagtggcacgtaggcgtccacg 218 |||||||||||||||||||||| ||||||| |||| |||||||||||||||||||| ||| Sbjct: 33963012 tagcagcagttcttgaaggtgtccatgtcgtggctgaagagtggcacgtaggcgtcgacg 33963071 Query: 219 ctgccgtcgcccaagaaagacggcag 244 ||||||||||| ||||||| ||||| Sbjct: 33963072 ctgccgtcgccggagaaagatggcag 33963097
>dbj|AK109743.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-146-E07, full insert sequence Length = 1640 Score = 117 bits (59), Expect = 2e-23 Identities = 83/91 (91%) Strand = Plus / Minus Query: 158 gtagcagcagttcttgaaggtgttcatgtcgcggctaaagagtggcacgtaggcgtccac 217 ||||||||||||||||||| || |||||||||||| |||||||||||||| ||||| || Sbjct: 1411 gtagcagcagttcttgaagacgtccatgtcgcggctgaagagtggcacgtacgcgtcaac 1352 Query: 218 gctgccgtcgcccaagaaagacggcagcagg 248 ||| |||||||| |||||||||||||||||| Sbjct: 1351 gctcccgtcgccgaagaaagacggcagcagg 1321
>ref|XM_474244.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 1350 Score = 115 bits (58), Expect = 7e-23 Identities = 79/86 (91%) Strand = Plus / Minus Query: 159 tagcagcagttcttgaaggtgttcatgtcgcggctaaagagtggcacgtaggcgtccacg 218 |||||||||||||||||||||| ||||||| |||| |||||||||||||||||||| ||| Sbjct: 1328 tagcagcagttcttgaaggtgtccatgtcgtggctgaagagtggcacgtaggcgtcgacg 1269 Query: 219 ctgccgtcgcccaagaaagacggcag 244 ||||||||||| ||||||| ||||| Sbjct: 1268 ctgccgtcgccggagaaagatggcag 1243
>ref|XM_469315.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1389 Score = 46.1 bits (23), Expect = 0.052 Identities = 32/35 (91%) Strand = Plus / Minus Query: 195 aagagtggcacgtaggcgtccacgctgccgtcgcc 229 ||||||||||||||| |||| | |||||||||||| Sbjct: 1340 aagagtggcacgtagacgtcgatgctgccgtcgcc 1306
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 Score = 46.1 bits (23), Expect = 0.052 Identities = 32/35 (91%) Strand = Plus / Minus Query: 195 aagagtggcacgtaggcgtccacgctgccgtcgcc 229 ||||||||||||||| |||| | |||||||||||| Sbjct: 26918691 aagagtggcacgtagacgtcgatgctgccgtcgcc 26918657
>gb|AC087412.14| Oryza sativa chromosome 3 BAC OSJNBb0070O09 genomic sequence, complete sequence Length = 149303 Score = 46.1 bits (23), Expect = 0.052 Identities = 32/35 (91%) Strand = Plus / Minus Query: 195 aagagtggcacgtaggcgtccacgctgccgtcgcc 229 ||||||||||||||| |||| | |||||||||||| Sbjct: 97691 aagagtggcacgtagacgtcgatgctgccgtcgcc 97657
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 46.1 bits (23), Expect = 0.052 Identities = 32/35 (91%) Strand = Plus / Minus Query: 195 aagagtggcacgtaggcgtccacgctgccgtcgcc 229 ||||||||||||||| |||| | |||||||||||| Sbjct: 27010014 aagagtggcacgtagacgtcgatgctgccgtcgcc 27009980
>gb|AC150752.4| Bos taurus BAC CH240-288E20 (Children's Hospital Oakland Research Institute Bovine BAC Library (male)) complete sequence Length = 165924 Score = 42.1 bits (21), Expect = 0.81 Identities = 21/21 (100%) Strand = Plus / Minus Query: 24 ggctcttccaaaacagaatgg 44 ||||||||||||||||||||| Sbjct: 58216 ggctcttccaaaacagaatgg 58196
>emb|BX284752.1|NCB23B10 Neurospora crassa DNA linkage group II BAC contig B23B10 Length = 99967 Score = 42.1 bits (21), Expect = 0.81 Identities = 24/25 (96%) Strand = Plus / Plus Query: 82 agtggctaacgttgatccgacacca 106 |||||||||||| |||||||||||| Sbjct: 33123 agtggctaacgtcgatccgacacca 33147
>dbj|AK089687.2| Mus musculus activated spleen cDNA, RIKEN full-length enriched library, clone:F830008L10 product:interleukin 13 receptor, alpha 2, full insert sequence Length = 2206 Score = 42.1 bits (21), Expect = 0.81 Identities = 21/21 (100%) Strand = Plus / Minus Query: 26 ctcttccaaaacagaatggat 46 ||||||||||||||||||||| Sbjct: 213 ctcttccaaaacagaatggat 193
>emb|AL807780.7| Mouse DNA sequence from clone RP23-456P12 on chromosome X, complete sequence Length = 158108 Score = 42.1 bits (21), Expect = 0.81 Identities = 21/21 (100%) Strand = Plus / Plus Query: 26 ctcttccaaaacagaatggat 46 ||||||||||||||||||||| Sbjct: 34748 ctcttccaaaacagaatggat 34768
>ref|XM_633465.1| Dictyostelium discoideum hypothetical protein (DDB0218618), partial mRNA Length = 1587 Score = 40.1 bits (20), Expect = 3.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 50 tgaatcaagaacttcaaaaa 69 |||||||||||||||||||| Sbjct: 1145 tgaatcaagaacttcaaaaa 1164
>emb|AL663099.7| Mouse DNA sequence from clone DN-384L23 on chromosome 3 Contains a glyceraldehyde-3-phosphate dehydrogenase (GAPD) pseudogene, two novel genes (4930406D18RIK) (4930431B09Rik), the 5' end of a novel gene (E130019M14RIK) and a CpG island, complete sequence Length = 177135 Score = 40.1 bits (20), Expect = 3.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 1 gaaagattaaaacttcgttg 20 |||||||||||||||||||| Sbjct: 35260 gaaagattaaaacttcgttg 35241
>gb|U13072.1| Caenorhabditis elegans cosmid C07D10, complete sequence Length = 27935 Score = 40.1 bits (20), Expect = 3.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 49 ttgaatcaagaacttcaaaa 68 |||||||||||||||||||| Sbjct: 19499 ttgaatcaagaacttcaaaa 19518
>dbj|AP003385.2| Homo sapiens genomic DNA, chromosome 11q clone:RP11-655M14, complete sequences Length = 174074 Score = 40.1 bits (20), Expect = 3.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 106 aggcacacattggcacatgg 125 |||||||||||||||||||| Sbjct: 72264 aggcacacattggcacatgg 72245 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 2,003,387 Number of Sequences: 3902068 Number of extensions: 2003387 Number of successful extensions: 41265 Number of sequences better than 10.0: 19 Number of HSP's better than 10.0 without gapping: 19 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 41203 Number of HSP's gapped (non-prelim): 61 length of query: 248 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 226 effective length of database: 17,147,199,772 effective search space: 3875267148472 effective search space used: 3875267148472 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
