ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbart59h06
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
15E5_RAT (Q63003) 5E5 antigen 30 1.5
2UPPS_XANOR (Q5H1E5) Undecaprenyl pyrophosphate synthetase (EC 2.... 29 3.3
3ADA19_MOUSE (O35674) ADAM 19 precursor (EC 3.4.24.-) (A disinteg... 29 3.3
4VIT6_CAEEL (P18948) Vitellogenin 6 precursor 28 7.3
5LCR11_ARATH (P82726) Putative low-molecular-weight cysteine-rich... 28 7.3
6PG24_MYCTU (Q10637) Hypothetical PE-PGRS family protein PE_PGRS2... 28 7.3

>5E5_RAT (Q63003) 5E5 antigen|
          Length = 825

 Score = 30.0 bits (66), Expect = 1.5
 Identities = 17/39 (43%), Positives = 20/39 (51%), Gaps = 1/39 (2%)
 Frame = -1

Query: 339 SAGEQGCRCARGRAPGAGELVGAEAQVHGQGGR-WAMDA 226
           S GE G    RGR  GAGE      +  G+GGR W  +A
Sbjct: 292 SPGEWGADVPRGRGEGAGEWGSDVPKDRGEGGREWGPEA 330



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>UPPS_XANOR (Q5H1E5) Undecaprenyl pyrophosphate synthetase (EC 2.5.1.31) (UPP|
           synthetase) (Di-trans,poly-cis-decaprenylcistransferase)
           (Undecaprenyl diphosphate synthase) (UDS)
          Length = 258

 Score = 28.9 bits (63), Expect = 3.3
 Identities = 11/23 (47%), Positives = 15/23 (65%)
 Frame = -2

Query: 299 HPVPASWWVPKHKFMVKGGDGRW 231
           HPVP    VP+H  ++  G+GRW
Sbjct: 7   HPVPPVADVPRHIAIIMDGNGRW 29



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>ADA19_MOUSE (O35674) ADAM 19 precursor (EC 3.4.24.-) (A disintegrin and|
           metalloproteinase domain 19) (Meltrin beta)
          Length = 920

 Score = 28.9 bits (63), Expect = 3.3
 Identities = 18/44 (40%), Positives = 22/44 (50%)
 Frame = +1

Query: 118 PRSWQRAQRRESHQRPLSS**MADASNLT*MCLKSWSVHRPSPP 249
           P +  R +R+ES +RP  S  M  A N    CL S    RP PP
Sbjct: 821 PEAGARIERKESARRPPPSRPMPPAPN----CLLSQDFSRPRPP 860



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>VIT6_CAEEL (P18948) Vitellogenin 6 precursor|
          Length = 1650

 Score = 27.7 bits (60), Expect = 7.3
 Identities = 15/37 (40%), Positives = 19/37 (51%), Gaps = 2/37 (5%)
 Frame = +1

Query: 67   NGKYTRNGRQTVSRYLEP--RSWQRAQRRESHQRPLS 171
            NGK   + +Q  S Y  P   SW R Q RE  + PL+
Sbjct: 1580 NGKSQESKKQKTSVYCLPSSNSWARRQMREIRREPLA 1616



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>LCR11_ARATH (P82726) Putative low-molecular-weight cysteine-rich protein LCR11|
           precursor
          Length = 102

 Score = 27.7 bits (60), Expect = 7.3
 Identities = 16/57 (28%), Positives = 29/57 (50%)
 Frame = -2

Query: 257 MVKGGDGRWTLQDFKHI*VKLLASAIH*EESGR*CDSRRCARCQDRGSK*RLTVCRP 87
           MVKG  G+      + + +K+L +A H  +    CDS+ C    ++ S   ++ C+P
Sbjct: 23  MVKGTVGK------QRLCIKVLTNASHVSKGASTCDSKLCTSLCEKISPQGVSFCKP 73



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>PG24_MYCTU (Q10637) Hypothetical PE-PGRS family protein PE_PGRS24 precursor|
          Length = 603

 Score = 27.7 bits (60), Expect = 7.3
 Identities = 12/27 (44%), Positives = 15/27 (55%)
 Frame = -1

Query: 300 APGAGELVGAEAQVHGQGGRWAMDAPG 220
           APG G+  GA   ++G GG     APG
Sbjct: 125 APGTGQAGGAGGLLYGNGGAGGSGAPG 151


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 51,375,591
Number of Sequences: 219361
Number of extensions: 978014
Number of successful extensions: 2526
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 2485
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2525
length of database: 80,573,946
effective HSP length: 91
effective length of database: 60,612,095
effective search space used: 1454690280
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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