>ASPM_BOVIN (P62285) Abnormal spindle-like microcephaly-associated protein|
            homolog (Fragment)
          Length = 3371

 Score = 35.4 bits (80), Expect = 0.034
 Identities = 21/65 (32%), Positives = 33/65 (50%)
 Frame = -3

Query: 208  ITAQRHYNMHIMLFISAVVCWRSEVKRFEAKRGKRESALHLVSCHFSMSCYRNHILNFNY 29
            +  QR Y   + +   AV+C +S  + F+A+RG +   +HL +     SCYR H    +Y
Sbjct: 2567 VFVQRRYRELMAVRTQAVICIQSCFRGFKARRGIQR--MHLAATRI-QSCYRRHRARADY 2623

Query: 28   NLYKR 14
               KR
Sbjct: 2624 QAKKR 2628

>ASPM_SHEEP (P62297) Abnormal spindle-like microcephaly-associated protein|
            homolog (Fragment)
          Length = 3374

 Score = 35.0 bits (79), Expect = 0.044
 Identities = 20/65 (30%), Positives = 33/65 (50%)
 Frame = -3

Query: 208  ITAQRHYNMHIMLFISAVVCWRSEVKRFEAKRGKRESALHLVSCHFSMSCYRNHILNFNY 29
            +  QR Y + + +   A +C +S  + F+A+RG +   +HL +     SCYR H    +Y
Sbjct: 2570 VFVQRRYRVLMAVRTQAAICIQSCFRGFKARRGIQ--GMHLAATRI-QSCYRRHRARADY 2626

Query: 28   NLYKR 14
               KR
Sbjct: 2627 QAKKR 2631

>ORN_CHRVO (Q7NVH5) Oligoribonuclease (EC 3.1.-.-)|
          Length = 181

 Score = 30.4 bits (67), Expect = 1.1
 Identities = 17/57 (29%), Positives = 25/57 (43%), Gaps = 1/57 (1%)
 Frame = -3

Query: 208 ITAQRHY-NMHIMLFISAVVCWRSEVKRFEAKRGKRESALHLVSCHFSMSCYRNHIL 41
           + A  HY N+ +         WR E+ +   KRGK E+   ++     M  YR H L
Sbjct: 123 LEAYFHYRNLDVSTLKELCKRWRPEIAKGVVKRGKHEALADILESIEEMRYYREHFL 179

>I17RB_MOUSE (Q9JIP3) Interleukin-17 receptor B precursor (IL-17 receptor B)|
           (IL-17RB) (Interleukin-17B receptor) (IL-17B receptor)
           (IL-17 receptor homolog 1) (IL-17Rh1) (IL17Rh1)
           (IL-17ER)
          Length = 499

 Score = 29.3 bits (64), Expect = 2.4
 Identities = 13/48 (27%), Positives = 24/48 (50%)
 Frame = -2

Query: 332 NPISVCRQCRRHHMVSVTNSMHNHTVVLTSDMKLRRKSIIIHHGATPL 189
           N +SVC Q   +H++    + H   +  T  M ++++S   H   +PL
Sbjct: 455 NALSVCPQ---YHLMKDATAFHTELLKATQSMSVKKRSQACHDSCSPL 499

>OCTC_HUMAN (Q9UKG9) Peroxisomal carnitine O-octanoyltransferase (EC 2.3.1.137)|
           (COT)
          Length = 612

 Score = 28.9 bits (63), Expect = 3.2
 Identities = 12/36 (33%), Positives = 17/36 (47%)
 Frame = -1

Query: 282 YQQHAQPHCCIDQ*YETEKEEHHHPSRRNAITTCTL 175
           Y+ H  P CC    YET    H +  R   + +CT+
Sbjct: 429 YRLHGHPGCC----YETAMTRHFYHGRTETMRSCTV 460

>EPD_NOTCH (Q91130) Ependymin precursor (EPD)|
          Length = 214

 Score = 28.5 bits (62), Expect = 4.2
 Identities = 14/54 (25%), Positives = 26/54 (48%), Gaps = 1/54 (1%)
 Frame = -2

Query: 311 QCRRHHMVSVTNSMHNHTVVLTSDMKLRRK-SIIIHHGATPLQHAHYAIHLSRC 153
           Q R+H M    ++ H   + + S   + +   + + HG  P  HAHY++  + C
Sbjct: 102 QFRKHLMEIPPDATHESEIYMGSPTVIEQGLRVRVWHGKLPELHAHYSLSTTSC 155

>MATK_LATAP (Q8MCS1) Maturase K (Intron maturase)|
          Length = 506

 Score = 28.5 bits (62), Expect = 4.2
 Identities = 18/65 (27%), Positives = 33/65 (50%), Gaps = 7/65 (10%)
 Frame = -2

Query: 305 RRHHMVSVTNSMHNHTVVLTSD-----MKLRRKSIIIHHGATPLQHA--HYAIHLSRCLL 147
           +R H+V V +   ++T+ L  D     ++ + K I+    A  L +   HY IHL +C  
Sbjct: 250 KREHLVKVFSKDFSYTLTLFKDPNIHYVRYQGKCILTSKNAPFLMNKWKHYFIHLWQCFF 309

Query: 146 EV*SE 132
           ++ S+
Sbjct: 310 DIWSQ 314

>MATK_ASTSI (Q5D1C1) Maturase K (Intron maturase)|
          Length = 508

 Score = 28.5 bits (62), Expect = 4.2
 Identities = 20/65 (30%), Positives = 31/65 (47%), Gaps = 7/65 (10%)
 Frame = -2

Query: 305 RRHHMVSVTNSMHNHTVVLTSD-----MKLRRKSIIIHHGATPLQHA--HYAIHLSRCLL 147
           +R H+V V     + T+ L  D     ++ + KSI+    A  L +   HY IHL  C  
Sbjct: 252 KREHLVEVFAKDFSSTLTLFKDPLIHYVRYQGKSILASKNAPLLMNKWKHYFIHLWECFF 311

Query: 146 EV*SE 132
           +V S+
Sbjct: 312 DVWSQ 316

>XCBA_NEIME (Q7X4S1) Capsular polysaccharide phosphotransferase xcbA (EC|
           2.7.-.-) (Stealth protein xcbA)
          Length = 486

 Score = 28.5 bits (62), Expect = 4.2
 Identities = 16/59 (27%), Positives = 28/59 (47%), Gaps = 2/59 (3%)
 Frame = -2

Query: 326 ISVCRQCRRHHM--VSVTNSMHNHTVVLTSDMKLRRKSIIIHHGATPLQHAHYAIHLSR 156
           ++VCRQ R   +  +++   +H+H  +LT      R   I  +  +P    HY   L+R
Sbjct: 282 LNVCRQNRFRDISDINMATFLHHHFAILTGQALATRTKCIYFNIRSPQAAQHYKTLLAR 340

>RECX_PASMU (Q9CK20) Regulatory protein recX|
          Length = 164

 Score = 28.5 bits (62), Expect = 4.2
 Identities = 16/48 (33%), Positives = 25/48 (52%), Gaps = 2/48 (4%)
 Frame = -2

Query: 302 RHHMVSVTNSMHNHTVVLTSDMKLRRK--SIIIHHGATPLQHAHYAIH 165
           +HH ++V          +T D+KL++K    ++ HG  P Q AHY  H
Sbjct: 113 QHHALTVLRKKFPQYAEIT-DLKLKQKVWRYMLSHGFKPEQFAHYVGH 159

>TAO3_YEAST (P40468) Cell morphogenesis protein PAG1 (Protein TAO3)|
          Length = 2376

 Score = 28.5 bits (62), Expect = 4.2
 Identities = 10/40 (25%), Positives = 21/40 (52%)
 Frame = -3

Query: 211 SITAQRHYNMHIMLFISAVVCWRSEVKRFEAKRGKRESAL 92
           S  + + YN  ++L++  + CW  E +    +  K+E+ L
Sbjct: 865 SYLSSKEYNRLLILYVELLECWLEEFQSSNKEENKKETGL 904

>MATK_OXYPI (Q5D1B9) Maturase K (Intron maturase)|
          Length = 506

 Score = 28.1 bits (61), Expect = 5.4
 Identities = 20/65 (30%), Positives = 30/65 (46%), Gaps = 7/65 (10%)
 Frame = -2

Query: 305 RRHHMVSVTNSMHNHTVVLTSD-----MKLRRKSIIIHHGATPLQHA--HYAIHLSRCLL 147
           +R H+V V     + TV    D     ++ + KSI+    A  L +   HY IHL  C  
Sbjct: 250 KREHLVEVFAKDFSSTVTFFKDPLFHYVRYQGKSILASKNAPLLMNKWKHYFIHLWECFF 309

Query: 146 EV*SE 132
           +V S+
Sbjct: 310 DVWSQ 314

>NADA_CHLTE (Q8KEW2) Quinolinate synthetase A|
          Length = 322

 Score = 28.1 bits (61), Expect = 5.4
 Identities = 15/45 (33%), Positives = 26/45 (57%)
 Frame = -2

Query: 350 PSEPEANPISVCRQCRRHHMVSVTNSMHNHTVVLTSDMKLRRKSI 216
           P +P ANP SVC+Q +++ +  +   M N +  +T D  LR  ++
Sbjct: 268 PKDP-ANPRSVCKQMKQNTLDKLYLCMVNRSPEITVDESLREGAL 311

>MATK_WISFR (Q9TKP6) Maturase K (Intron maturase)|
          Length = 506

 Score = 27.3 bits (59), Expect = 9.3
 Identities = 19/65 (29%), Positives = 31/65 (47%), Gaps = 7/65 (10%)
 Frame = -2

Query: 305 RRHHMVSVTNSMHNHTVVLTSD-----MKLRRKSIIIHHGATPLQHA--HYAIHLSRCLL 147
           +R H+V V     + T+    D     ++ + KSI+    A  L +   HY IHL +C  
Sbjct: 250 KREHLVKVFPKDFSSTLTFFKDPFIHYVRYQGKSILASKNAPLLMNKWKHYFIHLWQCFF 309

Query: 146 EV*SE 132
           +V S+
Sbjct: 310 DVWSQ 314

>KBL_MOUSE (O88986) 2-amino-3-ketobutyrate coenzyme A ligase, mitochondrial|
           precursor (EC 2.3.1.29) (AKB ligase) (Glycine
           acetyltransferase)
          Length = 416

 Score = 27.3 bits (59), Expect = 9.3
 Identities = 15/45 (33%), Positives = 25/45 (55%), Gaps = 1/45 (2%)
 Frame = -2

Query: 221 SIIIHHGATPLQHAHYAIHLSRCLLEV*SEEVRGK-TWEARVGLT 90
           S + H   +P + AH A+   RC+L+   E +RG  TW++   +T
Sbjct: 4   SFMWHGALSPGRRAHSALAQLRCILDSELEGIRGAGTWKSERVIT 48

>LGRD_BREPA (Q70LM4) Linear gramicidin synthetase subunit D [Includes:|
            ATP-dependent tryptophan adenylase (TrpA) (Tryptophan
            activase); ATP-dependent D-leucine adenylase (D-LeuA)
            (D-Leucine activase); Leucine racemase [ATP-hydrolyzing]
            (EC 5.1.1.-); ATP-d
          Length = 5085

 Score = 27.3 bits (59), Expect = 9.3
 Identities = 14/47 (29%), Positives = 27/47 (57%), Gaps = 2/47 (4%)
 Frame = -2

Query: 347  SEPEANPISVCRQCRRHHMVSVTNSMHNHTVVLT--SDMKLRRKSII 213
            S PE++  ++C   +RHH++ V + +    + +T     KL+R+S I
Sbjct: 2481 SAPESSGANLCPSAQRHHLLDVNSVVAGEQLHVTWRYSEKLQRESTI 2527

>GLGB_PARUW (Q6MAB4) 1,4-alpha-glucan branching enzyme (EC 2.4.1.18) (Glycogen|
           branching enzyme) (BE)
           (1,4-alpha-D-glucan:1,4-alpha-D-glucan
           6-glucosyl-transferase)
          Length = 727

 Score = 27.3 bits (59), Expect = 9.3
 Identities = 12/36 (33%), Positives = 20/36 (55%)
 Frame = -2

Query: 263 HTVVLTSDMKLRRKSIIIHHGATPLQHAHYAIHLSR 156
           H  V++   K   + ++  H  TPL H+ Y +HLS+
Sbjct: 639 HNSVISYVRKGGTERLLCVHNFTPLYHSDYILHLSQ 674


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 51,755,015
Number of Sequences: 219361
Number of extensions: 945935
Number of successful extensions: 2269
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 2236
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2267
length of database: 80,573,946
effective HSP length: 99
effective length of database: 58,857,207
effective search space used: 1412572968
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)