>DCR1_DROME (Q9VCU9) Endoribonuclease Dcr-1 (EC 3.1.26.-) (Protein dicer-1)|
          Length = 2249

 Score = 30.0 bits (66), Expect = 1.5
 Identities = 19/63 (30%), Positives = 29/63 (46%), Gaps = 2/63 (3%)
 Frame = +1

Query: 34  DRNDNRVHRKYTQNPLSI*--PKWSGNSRTVQSGSRTCTKPTTTRRSSKEKRDGTDNQCI 207
           DR  NR   + T  P      PK S  + T Q  +R   +   TRR  ++  DG+D  C 
Sbjct: 439 DRQTNRSAARVTPTPTPAHAKPKPSSGANTAQPRTR---RRVYTRRHHRDHNDGSDTLCA 495

Query: 208 IVH 216
           +++
Sbjct: 496 LIY 498

>CPRF1_PETCR (Q99089) Common plant regulatory factor CPRF-1|
          Length = 411

 Score = 28.9 bits (63), Expect = 3.4
 Identities = 16/47 (34%), Positives = 24/47 (51%)
 Frame = +2

Query: 83  LYNQNGAVIHVQYRAEAEHALNQPLPADHQKKNGTGRTTNASSYIKN 223
           L N N  ++ V   A+AE A +  L  +++KK  T  T N  S + N
Sbjct: 325 LTNDNSRLLEVMKNAQAERAADVGLGNNNEKKASTLSTANLLSRVDN 371

>POL4_DROME (P10394) Retrovirus-related Pol polyprotein from transposon 412|
            [Includes: Protease (EC 3.4.23.-); Reverse transcriptase
            (EC 2.7.7.49); Endonuclease]
          Length = 1237

 Score = 27.7 bits (60), Expect = 7.5
 Identities = 15/54 (27%), Positives = 27/54 (50%)
 Frame = +2

Query: 20   LLNGWTEMIIEYTENIHKILSLYNQNGAVIHVQYRAEAEHALNQPLPADHQKKN 181
            L+ G T  + ++   +H I  +YN +      +YR E  +A  + L   H++KN
Sbjct: 1114 LVFGRTSNLPKHFNKLHSIEPIYNIDDYAKESKYRLEVAYARARKLLEAHKEKN 1167

>RPC2B_CHLRE (Q8HUH0) DNA-directed RNA polymerase beta' chain C-terminal subunit|
           (EC 2.7.7.6) (PEP) (Plastid-encoded RNA polymerase beta'
           C-terminal section) (RNA polymerase beta' C-terminal
           section)
          Length = 489

 Score = 27.3 bits (59), Expect = 9.9
 Identities = 14/41 (34%), Positives = 21/41 (51%), Gaps = 6/41 (14%)
 Frame = +2

Query: 53  YTENIHKILSLYNQNGAVIH------VQYRAEAEHALNQPL 157
           Y  NIH++L  YNQ+   +H      +Q   E  + + QPL
Sbjct: 279 YFHNIHEVLKAYNQHLIHLHAVIWVNIQGHLETANNIEQPL 319

>DDEF1_BOVIN (O97902) 130-kDa phosphatidylinositol 4,5-biphosphate-dependent|
           ARF1 GTPase-activating protein (PIP2-dependent ARF1 GAP)
           (ADP-ribosylation factor-directed GTPase-activating
           protein 1) (ARF GTPase-activating protein 1)
           (Development and differe
          Length = 1129

 Score = 27.3 bits (59), Expect = 9.9
 Identities = 10/19 (52%), Positives = 14/19 (73%)
 Frame = +3

Query: 261 DTKEEKSSSDAREGGHSMH 317
           D KE +  S +R+GG+SMH
Sbjct: 300 DQKESRRDSQSRQGGYSMH 318


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 42,874,493
Number of Sequences: 219361
Number of extensions: 745191
Number of successful extensions: 1934
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1907
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1934
length of database: 80,573,946
effective HSP length: 82
effective length of database: 62,586,344
effective search space used: 1502072256
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)