ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
Japanese | English
更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbart59h02
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1ref|XM_467091.1| Oryza sativa (japonica cultivar-group), mRNA 66 7e-08
2dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic D... 66 7e-08
3dbj|AP002485.2| Oryza sativa (japonica cultivar-group) genomic D... 66 7e-08
4dbj|AK062922.1| Oryza sativa (japonica cultivar-group) cDNA clon... 66 7e-08
5emb|AJ307662.1|OSA307662 Oryza sativa genomic DNA fragment, chro... 66 7e-08
6gb|AC127300.3| Mus musculus BAC clone RP23-264J18 from chromosom... 44 0.27
7dbj|AK086041.1| Mus musculus 16 days neonate heart cDNA, RIKEN f... 44 0.27
8gb|AC092916.6| Homo sapiens 3 BAC RP11-615J4 (Roswell Park Cance... 42 1.1
9gb|AY938407.1| Uncultured eukaryote clone ENI47296.00339 18S rib... 42 1.1
10gb|AY938380.1| Uncultured eukaryote clone ENI47296.00298 18S rib... 42 1.1
11gb|AY938362.1| Uncultured eukaryote clone ENI47296.00256 18S rib... 42 1.1
12gb|AY938336.1| Uncultured eukaryote clone ENI47296.00208 18S rib... 42 1.1
13gb|AY938304.1| Uncultured eukaryote clone ENI47296.00151 18S rib... 42 1.1
14gb|AY938212.1| Uncultured eukaryote clone ENI42482.00364 18S rib... 42 1.1
15gb|AY938060.1| Uncultured eukaryote clone ENI42482.00172 18S rib... 42 1.1
16gb|AY937894.1| Uncultured eukaryote clone ENI40076.00794 18S rib... 42 1.1
17gb|AY937836.1| Uncultured eukaryote clone ENI40076.00722 18S rib... 42 1.1
18gb|AY937612.1| Uncultured eukaryote clone ENI40076.00315 18S rib... 42 1.1
19gb|AY937581.1| Uncultured eukaryote clone ENI40076.00252 18S rib... 42 1.1
20dbj|AP004975.1| Lotus japonicus genomic DNA, chromosome 5, clone... 42 1.1
21emb|AL772385.8| Mouse DNA sequence from clone RP23-340E12 on chr... 42 1.1
22emb|AJ276414.1|AAN276414 Artemisia annua partial gASC23 gene for... 40 4.2
23gb|AC012444.9| Homo sapiens BAC clone RP11-41C17 from 2, complet... 40 4.2 
>ref|XM_467091.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 404

 Score = 65.9 bits (33), Expect = 7e-08
 Identities = 60/67 (89%), Gaps = 4/67 (5%)
 Strand = Plus / Minus

                                                                       
Query: 188 ggacggacaaccaatgcatcatcgtacatcaagaatcgatcgatcg-tagtaccaccggt 246
           |||| |||||||||||||||   ||||||||||||||||||||||| |  ||||||||||
Sbjct: 226 ggactgacaaccaatgcatc---gtacatcaagaatcgatcgatcgatcataccaccggt 170

                  
Query: 247 aaaaatt 253
           |||||||
Sbjct: 169 aaaaatt 163



 Score = 40.1 bits (20), Expect = 4.2
 Identities = 39/44 (88%), Gaps = 1/44 (2%)
 Strand = Plus / Minus

                                                       
Query: 53  tacaccgaaaatatacacaaaatcctctctctatataaccaaaa 96
           |||||| ||||||||||| ||||| || ||||||| ||||||||
Sbjct: 362 tacaccaaaaatatacac-aaatcttccctctatagaaccaaaa 320
to top
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
                sequence
          Length = 35954743

 Score = 65.9 bits (33), Expect = 7e-08
 Identities = 60/67 (89%), Gaps = 4/67 (5%)
 Strand = Plus / Minus

                                                                            
Query: 188      ggacggacaaccaatgcatcatcgtacatcaagaatcgatcgatcg-tagtaccaccggt 246
                |||| |||||||||||||||   ||||||||||||||||||||||| |  ||||||||||
Sbjct: 26356294 ggactgacaaccaatgcatc---gtacatcaagaatcgatcgatcgatcataccaccggt 26356238

                       
Query: 247      aaaaatt 253
                |||||||
Sbjct: 26356237 aaaaatt 26356231



 Score = 40.1 bits (20), Expect = 4.2
 Identities = 39/44 (88%), Gaps = 1/44 (2%)
 Strand = Plus / Minus

                                                            
Query: 53       tacaccgaaaatatacacaaaatcctctctctatataaccaaaa 96
                |||||| ||||||||||| ||||| || ||||||| ||||||||
Sbjct: 26356430 tacaccaaaaatatacac-aaatcttccctctatagaaccaaaa 26356388
to top
>dbj|AP002485.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
             clone:P0491E01
          Length = 136150

 Score = 65.9 bits (33), Expect = 7e-08
 Identities = 60/67 (89%), Gaps = 4/67 (5%)
 Strand = Plus / Minus

                                                                         
Query: 188   ggacggacaaccaatgcatcatcgtacatcaagaatcgatcgatcg-tagtaccaccggt 246
             |||| |||||||||||||||   ||||||||||||||||||||||| |  ||||||||||
Sbjct: 88646 ggactgacaaccaatgcatc---gtacatcaagaatcgatcgatcgatcataccaccggt 88590

                    
Query: 247   aaaaatt 253
             |||||||
Sbjct: 88589 aaaaatt 88583



 Score = 40.1 bits (20), Expect = 4.2
 Identities = 39/44 (88%), Gaps = 1/44 (2%)
 Strand = Plus / Minus

                                                         
Query: 53    tacaccgaaaatatacacaaaatcctctctctatataaccaaaa 96
             |||||| ||||||||||| ||||| || ||||||| ||||||||
Sbjct: 88782 tacaccaaaaatatacac-aaatcttccctctatagaaccaaaa 88740
to top
>dbj|AK062922.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-108-H08, full
           insert sequence
          Length = 404

 Score = 65.9 bits (33), Expect = 7e-08
 Identities = 60/67 (89%), Gaps = 4/67 (5%)
 Strand = Plus / Minus

                                                                       
Query: 188 ggacggacaaccaatgcatcatcgtacatcaagaatcgatcgatcg-tagtaccaccggt 246
           |||| |||||||||||||||   ||||||||||||||||||||||| |  ||||||||||
Sbjct: 226 ggactgacaaccaatgcatc---gtacatcaagaatcgatcgatcgatcataccaccggt 170

                  
Query: 247 aaaaatt 253
           |||||||
Sbjct: 169 aaaaatt 163



 Score = 40.1 bits (20), Expect = 4.2
 Identities = 39/44 (88%), Gaps = 1/44 (2%)
 Strand = Plus / Minus

                                                       
Query: 53  tacaccgaaaatatacacaaaatcctctctctatataaccaaaa 96
           |||||| ||||||||||| ||||| || ||||||| ||||||||
Sbjct: 362 tacaccaaaaatatacac-aaatcttccctctatagaaccaaaa 320
to top
>emb|AJ307662.1|OSA307662 Oryza sativa genomic DNA fragment, chromosome 2
          Length = 339972

 Score = 65.9 bits (33), Expect = 7e-08
 Identities = 82/94 (87%), Gaps = 7/94 (7%)
 Strand = Plus / Minus

                                                                         
Query: 188   ggacggacaaccaatgcatcatcgtacatcaagaatcgatcgatcg-tagtaccaccggt 246
             |||| |||||||||||||||   ||||||||||||||||||||||| |  ||||||||||
Sbjct: 79437 ggactgacaaccaatgcatc---gtacatcaagaatcgatcgatcgatcataccaccggt 79381

                                               
Query: 247   aaaaatt-aaatgacgacacgaaagaagaaaaaa 279
             ||||||| |||| |  ||||||||||| ||||||
Sbjct: 79380 aaaaatttaaataa--acacgaaagaaaaaaaaa 79349



 Score = 40.1 bits (20), Expect = 4.2
 Identities = 39/44 (88%), Gaps = 1/44 (2%)
 Strand = Plus / Minus

                                                         
Query: 53    tacaccgaaaatatacacaaaatcctctctctatataaccaaaa 96
             |||||| ||||||||||| ||||| || ||||||| ||||||||
Sbjct: 79573 tacaccaaaaatatacac-aaatcttccctctatagaaccaaaa 79531
to top
>gb|AC127300.3| Mus musculus BAC clone RP23-264J18 from chromosome 8, complete sequence
          Length = 178649

 Score = 44.1 bits (22), Expect = 0.27
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                    
Query: 266    gaaagaagaaaaaagcagcagc 287
              ||||||||||||||||||||||
Sbjct: 126134 gaaagaagaaaaaagcagcagc 126113
to top
>dbj|AK086041.1| Mus musculus 16 days neonate heart cDNA, RIKEN full-length enriched
            library, clone:D830048B13 product:hypothetical protein,
            full insert sequence
          Length = 3256

 Score = 44.1 bits (22), Expect = 0.27
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                  
Query: 266  gaaagaagaaaaaagcagcagc 287
            ||||||||||||||||||||||
Sbjct: 1597 gaaagaagaaaaaagcagcagc 1576
to top
>gb|AC092916.6| Homo sapiens 3 BAC RP11-615J4 (Roswell Park Cancer Institute Human BAC
             Library) complete sequence
          Length = 132182

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 60    aaaatatacacaaaatcctct 80
             |||||||||||||||||||||
Sbjct: 82570 aaaatatacacaaaatcctct 82550
to top
>gb|AY938407.1| Uncultured eukaryote clone ENI47296.00339 18S ribosomal RNA gene,
           partial sequence
          Length = 576

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 145 aaaccaaccactacccgccga 165
           |||||||||||||||||||||
Sbjct: 49  aaaccaaccactacccgccga 29
to top
>gb|AY938380.1| Uncultured eukaryote clone ENI47296.00298 18S ribosomal RNA gene,
           partial sequence
          Length = 235

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 145 aaaccaaccactacccgccga 165
           |||||||||||||||||||||
Sbjct: 43  aaaccaaccactacccgccga 23
to top
>gb|AY938362.1| Uncultured eukaryote clone ENI47296.00256 18S ribosomal RNA gene,
           partial sequence
          Length = 589

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 145 aaaccaaccactacccgccga 165
           |||||||||||||||||||||
Sbjct: 49  aaaccaaccactacccgccga 29
to top
>gb|AY938336.1| Uncultured eukaryote clone ENI47296.00208 18S ribosomal RNA gene,
           partial sequence
          Length = 570

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 145 aaaccaaccactacccgccga 165
           |||||||||||||||||||||
Sbjct: 46  aaaccaaccactacccgccga 26
to top
>gb|AY938304.1| Uncultured eukaryote clone ENI47296.00151 18S ribosomal RNA gene,
           partial sequence
          Length = 589

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 145 aaaccaaccactacccgccga 165
           |||||||||||||||||||||
Sbjct: 49  aaaccaaccactacccgccga 29
to top
>gb|AY938212.1| Uncultured eukaryote clone ENI42482.00364 18S ribosomal RNA gene,
           partial sequence
          Length = 573

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 145 aaaccaaccactacccgccga 165
           |||||||||||||||||||||
Sbjct: 49  aaaccaaccactacccgccga 29
to top
>gb|AY938060.1| Uncultured eukaryote clone ENI42482.00172 18S ribosomal RNA gene,
           partial sequence
          Length = 545

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 145 aaaccaaccactacccgccga 165
           |||||||||||||||||||||
Sbjct: 49  aaaccaaccactacccgccga 29
to top
>gb|AY937894.1| Uncultured eukaryote clone ENI40076.00794 18S ribosomal RNA gene,
           partial sequence
          Length = 607

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 145 aaaccaaccactacccgccga 165
           |||||||||||||||||||||
Sbjct: 49  aaaccaaccactacccgccga 29
to top
>gb|AY937836.1| Uncultured eukaryote clone ENI40076.00722 18S ribosomal RNA gene,
           partial sequence
          Length = 605

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 145 aaaccaaccactacccgccga 165
           |||||||||||||||||||||
Sbjct: 45  aaaccaaccactacccgccga 25
to top
>gb|AY937612.1| Uncultured eukaryote clone ENI40076.00315 18S ribosomal RNA gene,
           partial sequence
          Length = 568

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 145 aaaccaaccactacccgccga 165
           |||||||||||||||||||||
Sbjct: 47  aaaccaaccactacccgccga 27
to top
>gb|AY937581.1| Uncultured eukaryote clone ENI40076.00252 18S ribosomal RNA gene,
           partial sequence
          Length = 491

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 145 aaaccaaccactacccgccga 165
           |||||||||||||||||||||
Sbjct: 44  aaaccaaccactacccgccga 24
to top
>dbj|AP004975.1| Lotus japonicus genomic DNA, chromosome 5, clone:LjT21J12, TM0158,
             complete sequence
          Length = 83377

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 132   cagaacatgcactaaaccaac 152
             |||||||||||||||||||||
Sbjct: 13126 cagaacatgcactaaaccaac 13146
to top
>emb|AL772385.8| Mouse DNA sequence from clone RP23-340E12 on chromosome 4, complete
              sequence
          Length = 220248

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 266    gaaagaagaaaaaagcagcag 286
              |||||||||||||||||||||
Sbjct: 115552 gaaagaagaaaaaagcagcag 115532
to top
>emb|AJ276414.1|AAN276414 Artemisia annua partial gASC23 gene for putative sesquiterpene
           cyclase, exons 1-3
          Length = 788

 Score = 40.1 bits (20), Expect = 4.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 137 catgcactaaaccaaccact 156
           ||||||||||||||||||||
Sbjct: 380 catgcactaaaccaaccact 399
to top
>gb|AC012444.9| Homo sapiens BAC clone RP11-41C17 from 2, complete sequence
          Length = 176567

 Score = 40.1 bits (20), Expect = 4.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 16    gactttattgaatggatgga 35
             ||||||||||||||||||||
Sbjct: 98729 gactttattgaatggatgga 98748


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,745,027
Number of Sequences: 3902068
Number of extensions: 3745027
Number of successful extensions: 70829
Number of sequences better than 10.0: 23
Number of HSP's better than 10.0 without gapping: 23
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 70766
Number of HSP's gapped (non-prelim): 53
length of query: 321
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 299
effective length of database: 17,147,199,772
effective search space: 5127012731828
effective search space used: 5127012731828
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
to top