ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbart59g08
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1emb|AL606595.4|OSJN00035 Oryza sativa genomic DNA, chromosome 4,... 139 7e-30
2dbj|AB189168.1| Oryza sativa (japonica cultivar-group) OsIDHc;1 ... 139 7e-30
3dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic D... 139 7e-30
4dbj|AK099258.1| Oryza sativa (japonica cultivar-group) cDNA clon... 139 7e-30
5dbj|AK072524.1| Oryza sativa (japonica cultivar-group) cDNA clon... 139 7e-30
6dbj|AK072240.1| Oryza sativa (japonica cultivar-group) cDNA clon... 139 7e-30
7ref|XM_472893.1| Oryza sativa (japonica cultivar-group), predic... 129 7e-27
8gb|AY775790.1| Zea mays NAD-dependent isocitrate dehydrogenase m... 94 4e-16
9gb|BT018657.1| Zea mays clone EL01N0508D03.d mRNA sequence 78 2e-11
10ref|XM_466525.1| Oryza sativa (japonica cultivar-group), mRNA 76 9e-11
11dbj|AB189169.1| Oryza sativa (japonica cultivar-group) OsIDHc;2 ... 76 9e-11
12dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic D... 76 9e-11
13dbj|AP004023.3| Oryza sativa (japonica cultivar-group) genomic D... 76 9e-11
14dbj|AK073096.1| Oryza sativa (japonica cultivar-group) cDNA clon... 76 9e-11
15gb|AC064814.10| Homo sapiens BAC clone CTD-2100B3 from 2, comple... 44 0.31
16gb|AC122864.3| Mus musculus BAC clone RP23-142M19 from 6, comple... 42 1.2
17emb|BX322533.5| Mouse DNA sequence from clone RP23-252N4 on chro... 42 1.2
18gb|AC127244.3| Mus musculus BAC clone RP24-416M6 from 6, complet... 42 1.2
19dbj|BA000021.3| Wigglesworthia glossinidia endosymbiont of Gloss... 42 1.2
20gb|AC117570.11| Mus musculus chromosome 9, clone RP23-18M12, com... 40 4.8
21ref|XM_425887.1| PREDICTED: Gallus gallus similar to transcripti... 40 4.8
22gb|AC011328.11| Homo sapiens chromosome 10 clone RP11-295O23, co... 40 4.8
23gb|AC151769.3| Mus musculus BAC clone RP24-375O19 from chromosom... 40 4.8
24emb|BX935818.2| Gallus gallus finished cDNA, clone ChEST165b17 40 4.8
25emb|AL732467.8| Mouse DNA sequence from clone RP23-147L14 on chr... 40 4.8
26gb|AC145916.3| Gallus gallus BAC clone CH261-82F15 from chromoso... 40 4.8 
>emb|AL606595.4|OSJN00035 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0044K18,
              complete sequence
          Length = 176615

 Score =  139 bits (70), Expect = 7e-30
 Identities = 88/94 (93%)
 Strand = Plus / Plus

                                                                          
Query: 263    ggtatctaatccagattagcgatcactgcatcagtaacttcctgggtggtgctggtgccg 322
              ||||||||||||||||| ||||| ||||||||||| ||||||||||||||||||||||||
Sbjct: 104550 ggtatctaatccagattggcgattactgcatcagtgacttcctgggtggtgctggtgccg 104609

                                                
Query: 323    cctaaatcctttgttctgtactggccttctgcaa 356
              |||| ||||||||||||||||| |||||| ||||
Sbjct: 104610 cctagatcctttgttctgtacttgccttccgcaa 104643
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>dbj|AB189168.1| Oryza sativa (japonica cultivar-group) OsIDHc;1 mRNA for
            NAD-dependent isocitrate dehydrogenase c;1, complete cds
          Length = 1290

 Score =  139 bits (70), Expect = 7e-30
 Identities = 88/94 (93%)
 Strand = Plus / Minus

                                                                        
Query: 263  ggtatctaatccagattagcgatcactgcatcagtaacttcctgggtggtgctggtgccg 322
            ||||||||||||||||| ||||| ||||||||||| ||||||||||||||||||||||||
Sbjct: 1156 ggtatctaatccagattggcgattactgcatcagtgacttcctgggtggtgctggtgccg 1097

                                              
Query: 323  cctaaatcctttgttctgtactggccttctgcaa 356
            |||| ||||||||||||||||| |||||| ||||
Sbjct: 1096 cctagatcctttgttctgtacttgccttccgcaa 1063
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>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete
                sequence
          Length = 35498469

 Score =  139 bits (70), Expect = 7e-30
 Identities = 88/94 (93%)
 Strand = Plus / Plus

                                                                            
Query: 263      ggtatctaatccagattagcgatcactgcatcagtaacttcctgggtggtgctggtgccg 322
                ||||||||||||||||| ||||| ||||||||||| ||||||||||||||||||||||||
Sbjct: 23939577 ggtatctaatccagattggcgattactgcatcagtgacttcctgggtggtgctggtgccg 23939636

                                                  
Query: 323      cctaaatcctttgttctgtactggccttctgcaa 356
                |||| ||||||||||||||||| |||||| ||||
Sbjct: 23939637 cctagatcctttgttctgtacttgccttccgcaa 23939670
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>dbj|AK099258.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023001J19, full
            insert sequence
          Length = 1508

 Score =  139 bits (70), Expect = 7e-30
 Identities = 88/94 (93%)
 Strand = Plus / Minus

                                                                        
Query: 263  ggtatctaatccagattagcgatcactgcatcagtaacttcctgggtggtgctggtgccg 322
            ||||||||||||||||| ||||| ||||||||||| ||||||||||||||||||||||||
Sbjct: 1238 ggtatctaatccagattggcgattactgcatcagtgacttcctgggtggtgctggtgccg 1179

                                              
Query: 323  cctaaatcctttgttctgtactggccttctgcaa 356
            |||| ||||||||||||||||| |||||| ||||
Sbjct: 1178 cctagatcctttgttctgtacttgccttccgcaa 1145
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>dbj|AK072524.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023127J10, full
            insert sequence
          Length = 1598

 Score =  139 bits (70), Expect = 7e-30
 Identities = 88/94 (93%)
 Strand = Plus / Minus

                                                                        
Query: 263  ggtatctaatccagattagcgatcactgcatcagtaacttcctgggtggtgctggtgccg 322
            ||||||||||||||||| ||||| ||||||||||| ||||||||||||||||||||||||
Sbjct: 1254 ggtatctaatccagattggcgattactgcatcagtgacttcctgggtggtgctggtgccg 1195

                                              
Query: 323  cctaaatcctttgttctgtactggccttctgcaa 356
            |||| ||||||||||||||||| |||||| ||||
Sbjct: 1194 cctagatcctttgttctgtacttgccttccgcaa 1161
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>dbj|AK072240.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023001I19, full
            insert sequence
          Length = 1508

 Score =  139 bits (70), Expect = 7e-30
 Identities = 88/94 (93%)
 Strand = Plus / Minus

                                                                        
Query: 263  ggtatctaatccagattagcgatcactgcatcagtaacttcctgggtggtgctggtgccg 322
            ||||||||||||||||| ||||| ||||||||||| ||||||||||||||||||||||||
Sbjct: 1238 ggtatctaatccagattggcgattactgcatcagtgacttcctgggtggtgctggtgccg 1179

                                              
Query: 323  cctaaatcctttgttctgtactggccttctgcaa 356
            |||| ||||||||||||||||| |||||| ||||
Sbjct: 1178 cctagatcctttgttctgtacttgccttccgcaa 1145
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>ref|XM_472893.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 1020

 Score =  129 bits (65), Expect = 7e-27
 Identities = 83/89 (93%)
 Strand = Plus / Minus

                                                                        
Query: 268  ctaatccagattagcgatcactgcatcagtaacttcctgggtggtgctggtgccgcctaa 327
            |||||||||||| ||||| ||||||||||| |||||||||||||||||||||||||||| 
Sbjct: 1020 ctaatccagattggcgattactgcatcagtgacttcctgggtggtgctggtgccgcctag 961

                                         
Query: 328  atcctttgttctgtactggccttctgcaa 356
            ||||||||||||||||| |||||| ||||
Sbjct: 960  atcctttgttctgtacttgccttccgcaa 932
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>gb|AY775790.1| Zea mays NAD-dependent isocitrate dehydrogenase mRNA, partial cds
          Length = 1117

 Score = 93.7 bits (47), Expect = 4e-16
 Identities = 83/95 (87%)
 Strand = Plus / Minus

                                                                       
Query: 266 atctaatccagattagcgatcactgcatcagtaacttcctgggtggtgctggtgccgcct 325
           |||||||||||||| || | ||| ||||| ||||||||||||||||||||| | ||||| 
Sbjct: 809 atctaatccagattggcaaccacagcatcggtaacttcctgggtggtgctgctaccgccc 750

                                              
Query: 326 aaatcctttgttctgtactggccttctgcaacgac 360
           | ||||||||||||||||  |||||| ||||||||
Sbjct: 749 agatcctttgttctgtacgtgccttcagcaacgac 715
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>gb|BT018657.1| Zea mays clone EL01N0508D03.d mRNA sequence
          Length = 1512

 Score = 77.8 bits (39), Expect = 2e-11
 Identities = 60/67 (89%)
 Strand = Plus / Minus

                                                                        
Query: 290  gcatcagtaacttcctgggtggtgctggtgccgcctaaatcctttgttctgtactggcct 349
            ||||| || ||||||||||||| |||||||||||| ||||| || |||||||||| ||||
Sbjct: 1189 gcatctgtgacttcctgggtggggctggtgccgcccaaatctttggttctgtacttgcct 1130

                   
Query: 350  tctgcaa 356
            |||||||
Sbjct: 1129 tctgcaa 1123
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>ref|XM_466525.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1476

 Score = 75.8 bits (38), Expect = 9e-11
 Identities = 65/74 (87%)
 Strand = Plus / Minus

                                                                        
Query: 281  gcgatcactgcatcagtaacttcctgggtggtgctggtgccgcctaaatcctttgttctg 340
            |||||||||||||| || |||||||| ||||||||| ||||||| || || || ||||||
Sbjct: 1155 gcgatcactgcatccgtgacttcctgcgtggtgctgctgccgcccaagtctttggttctg 1096

                          
Query: 341  tactggccttctgc 354
            |||| |||||||||
Sbjct: 1095 tacttgccttctgc 1082
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>dbj|AB189169.1| Oryza sativa (japonica cultivar-group) OsIDHc;2 mRNA for
            NAD-dependent isocitrate dehydrogenase c;2, complete cds
          Length = 1516

 Score = 75.8 bits (38), Expect = 9e-11
 Identities = 65/74 (87%)
 Strand = Plus / Minus

                                                                        
Query: 281  gcgatcactgcatcagtaacttcctgggtggtgctggtgccgcctaaatcctttgttctg 340
            |||||||||||||| || |||||||| ||||||||| ||||||| || || || ||||||
Sbjct: 1158 gcgatcactgcatccgtgacttcctgcgtggtgctgctgccgcccaagtctttggttctg 1099

                          
Query: 341  tactggccttctgc 354
            |||| |||||||||
Sbjct: 1098 tacttgccttctgc 1085
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>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
                sequence
          Length = 35954743

 Score = 75.8 bits (38), Expect = 9e-11
 Identities = 65/74 (87%)
 Strand = Plus / Plus

                                                                            
Query: 281      gcgatcactgcatcagtaacttcctgggtggtgctggtgccgcctaaatcctttgttctg 340
                |||||||||||||| || |||||||| ||||||||| ||||||| || || || ||||||
Sbjct: 23126725 gcgatcactgcatccgtgacttcctgcgtggtgctgctgccgcccaagtctttggttctg 23126784

                              
Query: 341      tactggccttctgc 354
                |||| |||||||||
Sbjct: 23126785 tacttgccttctgc 23126798
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>dbj|AP004023.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
             clone:OJ1126_D09
          Length = 138615

 Score = 75.8 bits (38), Expect = 9e-11
 Identities = 65/74 (87%)
 Strand = Plus / Plus

                                                                         
Query: 281   gcgatcactgcatcagtaacttcctgggtggtgctggtgccgcctaaatcctttgttctg 340
             |||||||||||||| || |||||||| ||||||||| ||||||| || || || ||||||
Sbjct: 93763 gcgatcactgcatccgtgacttcctgcgtggtgctgctgccgcccaagtctttggttctg 93822

                           
Query: 341   tactggccttctgc 354
             |||| |||||||||
Sbjct: 93823 tacttgccttctgc 93836
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>dbj|AK073096.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033005G21, full
            insert sequence
          Length = 1476

 Score = 75.8 bits (38), Expect = 9e-11
 Identities = 65/74 (87%)
 Strand = Plus / Minus

                                                                        
Query: 281  gcgatcactgcatcagtaacttcctgggtggtgctggtgccgcctaaatcctttgttctg 340
            |||||||||||||| || |||||||| ||||||||| ||||||| || || || ||||||
Sbjct: 1155 gcgatcactgcatccgtgacttcctgcgtggtgctgctgccgcccaagtctttggttctg 1096

                          
Query: 341  tactggccttctgc 354
            |||| |||||||||
Sbjct: 1095 tacttgccttctgc 1082
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>gb|AC064814.10| Homo sapiens BAC clone CTD-2100B3 from 2, complete sequence
          Length = 134167

 Score = 44.1 bits (22), Expect = 0.31
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                       
Query: 215   acttttaaaccagtcctccaaaagaa 240
             |||||||||||||||| |||||||||
Sbjct: 19853 acttttaaaccagtcccccaaaagaa 19878
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>gb|AC122864.3| Mus musculus BAC clone RP23-142M19 from 6, complete sequence
          Length = 210148

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 100   tttgccttgctacaaagtctc 120
             |||||||||||||||||||||
Sbjct: 27299 tttgccttgctacaaagtctc 27279
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>emb|BX322533.5| Mouse DNA sequence from clone RP23-252N4 on chromosome X, complete
            sequence
          Length = 105412

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 151  attatttctgaaacagaattg 171
            |||||||||||||||||||||
Sbjct: 3963 attatttctgaaacagaattg 3943
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>gb|AC127244.3| Mus musculus BAC clone RP24-416M6 from 6, complete sequence
          Length = 165720

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 100    tttgccttgctacaaagtctc 120
              |||||||||||||||||||||
Sbjct: 105740 tttgccttgctacaaagtctc 105720
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>dbj|BA000021.3| Wigglesworthia glossinidia endosymbiont of Glossina brevipalpis DNA,
             complete genome
          Length = 697724

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 150   aattatttctgaaacagaatt 170
             |||||||||||||||||||||
Sbjct: 19341 aattatttctgaaacagaatt 19361
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>gb|AC117570.11| Mus musculus chromosome 9, clone RP23-18M12, complete sequence
          Length = 238598

 Score = 40.1 bits (20), Expect = 4.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 140   tggattcctcaattatttct 159
             ||||||||||||||||||||
Sbjct: 37646 tggattcctcaattatttct 37665
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>ref|XM_425887.1| PREDICTED: Gallus gallus similar to transcription elongation factor
           B polypeptide 3 binding protein 1; elongin A binding
           protein 1 (LOC428327), mRNA
          Length = 3186

 Score = 40.1 bits (20), Expect = 4.8
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 142 gattcctcaattatttctgaaaca 165
           ||||||||| ||||||||||||||
Sbjct: 463 gattcctcacttatttctgaaaca 486
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>gb|AC011328.11| Homo sapiens chromosome 10 clone RP11-295O23, complete sequence
          Length = 216031

 Score = 40.1 bits (20), Expect = 4.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 197    taacactcagaagttgggac 216
              ||||||||||||||||||||
Sbjct: 134795 taacactcagaagttgggac 134814
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>gb|AC151769.3| Mus musculus BAC clone RP24-375O19 from chromosome 9, complete sequence
          Length = 186410

 Score = 40.1 bits (20), Expect = 4.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 140   tggattcctcaattatttct 159
             ||||||||||||||||||||
Sbjct: 70575 tggattcctcaattatttct 70556
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>emb|BX935818.2| Gallus gallus finished cDNA, clone ChEST165b17
          Length = 1288

 Score = 40.1 bits (20), Expect = 4.8
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 142 gattcctcaattatttctgaaaca 165
           ||||||||| ||||||||||||||
Sbjct: 433 gattcctcacttatttctgaaaca 456
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>emb|AL732467.8| Mouse DNA sequence from clone RP23-147L14 on chromosome 2, complete
              sequence
          Length = 229048

 Score = 40.1 bits (20), Expect = 4.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 205    agaagttgggacttttaaac 224
              ||||||||||||||||||||
Sbjct: 111711 agaagttgggacttttaaac 111692
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>gb|AC145916.3| Gallus gallus BAC clone CH261-82F15 from chromosome unknown, complete
             sequence
          Length = 209299

 Score = 40.1 bits (20), Expect = 4.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 143   attcctcaattatttctgaa 162
             ||||||||||||||||||||
Sbjct: 14094 attcctcaattatttctgaa 14113


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,612,656
Number of Sequences: 3902068
Number of extensions: 3612656
Number of successful extensions: 59208
Number of sequences better than 10.0: 26
Number of HSP's better than 10.0 without gapping: 26
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 59123
Number of HSP's gapped (non-prelim): 85
length of query: 360
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 338
effective length of database: 17,147,199,772
effective search space: 5795753522936
effective search space used: 5795753522936
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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