Clone Name | rbart59g04 |
---|---|
Clone Library Name | barley_pub |
>ref|NM_197779.1| Oryza sativa (japonica cultivar-group) putative calcineurin (OSJNBa0027P10.7), mRNA Length = 653 Score = 157 bits (79), Expect = 3e-35 Identities = 124/139 (89%) Strand = Plus / Minus Query: 257 atcatcaacctctgaatgaaacacaaagctgggaaatgttgttgttatgtccttgaggta 316 |||||||||||| |||| || ||||| ||||||||||| |||||||||||||||||||| Sbjct: 474 atcatcaacctcagaattgaatacaaaactgggaaatgtggttgttatgtccttgaggta 415 Query: 317 cgaaagagtcattatcttcaacaaggaaggattcctggacacaaaattctcccattctgt 376 || |||||||||||||||||| || || |||||||| || |||||||||||||| ||||| Sbjct: 414 cggaagagtcattatcttcaataaagagggattccttgagacaaaattctcccactctgt 355 Query: 377 tctatctattttaccatcc 395 |||||||||| | |||||| Sbjct: 354 tctatctattctcccatcc 336
>gb|DQ201195.1| Oryza sativa (japonica cultivar-group) calcineurin B-like protein 1 (CBL1) mRNA, complete cds Length = 642 Score = 157 bits (79), Expect = 3e-35 Identities = 124/139 (89%) Strand = Plus / Minus Query: 257 atcatcaacctctgaatgaaacacaaagctgggaaatgttgttgttatgtccttgaggta 316 |||||||||||| |||| || ||||| ||||||||||| |||||||||||||||||||| Sbjct: 630 atcatcaacctcagaattgaatacaaaactgggaaatgtggttgttatgtccttgaggta 571 Query: 317 cgaaagagtcattatcttcaacaaggaaggattcctggacacaaaattctcccattctgt 376 || |||||||||||||||||| || || |||||||| || |||||||||||||| ||||| Sbjct: 570 cggaagagtcattatcttcaataaagagggattccttgagacaaaattctcccactctgt 511 Query: 377 tctatctattttaccatcc 395 |||||||||| | |||||| Sbjct: 510 tctatctattctcccatcc 492
>gb|AY104107.1| Zea mays PCO062189 mRNA sequence Length = 1394 Score = 141 bits (71), Expect = 2e-30 Identities = 107/119 (89%) Strand = Plus / Minus Query: 277 acacaaagctgggaaatgttgttgttatgtccttgaggtacgaaagagtcattatcttca 336 |||||||||| || |||||||||||||||||||||||||| | |||||||||||||||| Sbjct: 1020 acacaaagctagggaatgttgttgttatgtccttgaggtatggcagagtcattatcttca 961 Query: 337 acaaggaaggattcctggacacaaaattctcccattctgttctatctattttaccatcc 395 |||||||||||| || | |||||||||||||| ||||||||||||||||| |||||| Sbjct: 960 tcaaggaaggatttcttgtgacaaaattctcccactctgttctatctatttttccatcc 902
>gb|AC084763.4| Oryza sativa chromosome 10 BAC OSJNBa0027P10 genomic sequence, complete sequence Length = 141307 Score = 103 bits (52), Expect = 4e-19 Identities = 79/88 (89%) Strand = Plus / Minus Query: 308 cttgaggtacgaaagagtcattatcttcaacaaggaaggattcctggacacaaaattctc 367 ||||||||||| |||||||||||||||||| || || |||||||| || ||||||||||| Sbjct: 102499 cttgaggtacggaagagtcattatcttcaataaagagggattccttgagacaaaattctc 102440 Query: 368 ccattctgttctatctattttaccatcc 395 ||| ||||||||||||||| | |||||| Sbjct: 102439 ccactctgttctatctattctcccatcc 102412 Score = 56.0 bits (28), Expect = 9e-05 Identities = 46/52 (88%) Strand = Plus / Minus Query: 257 atcatcaacctctgaatgaaacacaaagctgggaaatgttgttgttatgtcc 308 |||||||||||| |||| || ||||| ||||||||||| |||||||||||| Sbjct: 103379 atcatcaacctcagaattgaatacaaaactgggaaatgtggttgttatgtcc 103328
>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete sequence Length = 22685906 Score = 103 bits (52), Expect = 4e-19 Identities = 79/88 (89%) Strand = Plus / Minus Query: 308 cttgaggtacgaaagagtcattatcttcaacaaggaaggattcctggacacaaaattctc 367 ||||||||||| |||||||||||||||||| || || |||||||| || ||||||||||| Sbjct: 21787816 cttgaggtacggaagagtcattatcttcaataaagagggattccttgagacaaaattctc 21787757 Query: 368 ccattctgttctatctattttaccatcc 395 ||| ||||||||||||||| | |||||| Sbjct: 21787756 ccactctgttctatctattctcccatcc 21787729 Score = 56.0 bits (28), Expect = 9e-05 Identities = 46/52 (88%) Strand = Plus / Minus Query: 257 atcatcaacctctgaatgaaacacaaagctgggaaatgttgttgttatgtcc 308 |||||||||||| |||| || ||||| ||||||||||| |||||||||||| Sbjct: 21788696 atcatcaacctcagaattgaatacaaaactgggaaatgtggttgttatgtcc 21788645 Score = 40.1 bits (20), Expect = 5.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 370 attctgttctatctatttta 389 |||||||||||||||||||| Sbjct: 20938585 attctgttctatctatttta 20938566
>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence Length = 22698374 Score = 103 bits (52), Expect = 4e-19 Identities = 79/88 (89%) Strand = Plus / Minus Query: 308 cttgaggtacgaaagagtcattatcttcaacaaggaaggattcctggacacaaaattctc 367 ||||||||||| |||||||||||||||||| || || |||||||| || ||||||||||| Sbjct: 21799479 cttgaggtacggaagagtcattatcttcaataaagagggattccttgagacaaaattctc 21799420 Query: 368 ccattctgttctatctattttaccatcc 395 ||| ||||||||||||||| | |||||| Sbjct: 21799419 ccactctgttctatctattctcccatcc 21799392 Score = 56.0 bits (28), Expect = 9e-05 Identities = 46/52 (88%) Strand = Plus / Minus Query: 257 atcatcaacctctgaatgaaacacaaagctgggaaatgttgttgttatgtcc 308 |||||||||||| |||| || ||||| ||||||||||| |||||||||||| Sbjct: 21800359 atcatcaacctcagaattgaatacaaaactgggaaatgtggttgttatgtcc 21800308 Score = 40.1 bits (20), Expect = 5.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 370 attctgttctatctatttta 389 |||||||||||||||||||| Sbjct: 20949849 attctgttctatctatttta 20949830
>gb|AY887897.1| Gossypium hirsutum calcineurin B-like protein 2 (CBL2) mRNA, complete cds Length = 1322 Score = 65.9 bits (33), Expect = 9e-08 Identities = 54/61 (88%) Strand = Plus / Minus Query: 256 tatcatcaacctctgaatgaaacacaaagctgggaaatgttgttgttatgtccttgaggt 315 |||||||||| | ||| ||||| |||||||| || ||||||||||| ||||||||||||| Sbjct: 1042 tatcatcaacttgtgagtgaaaaacaaagctcgggaatgttgttgtgatgtccttgaggt 983 Query: 316 a 316 | Sbjct: 982 a 982
>ref|XM_463248.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1329 Score = 48.1 bits (24), Expect = 0.022 Identities = 39/44 (88%) Strand = Plus / Minus Query: 270 gaatgaaacacaaagctgggaaatgttgttgttatgtccttgag 313 ||||| || |||||||| |||||||| ||||| ||||||||||| Sbjct: 1000 gaatggaagacaaagcttggaaatgtagttgtgatgtccttgag 957
>gb|DQ201197.1| Oryza sativa (japonica cultivar-group) calcineurin B-like protein 3 (CBL3) mRNA, complete cds Length = 678 Score = 48.1 bits (24), Expect = 0.022 Identities = 39/44 (88%) Strand = Plus / Minus Query: 270 gaatgaaacacaaagctgggaaatgttgttgttatgtccttgag 313 ||||| || |||||||| |||||||| ||||| ||||||||||| Sbjct: 659 gaatggaagacaaagcttggaaatgtagttgtgatgtccttgag 616
>gb|DQ201196.1| Oryza sativa (japonica cultivar-group) calcineurin B-like protein 2 (CBL2) mRNA, complete cds Length = 678 Score = 48.1 bits (24), Expect = 0.022 Identities = 42/48 (87%) Strand = Plus / Minus Query: 270 gaatgaaacacaaagctgggaaatgttgttgttatgtccttgaggtac 317 ||||| || |||||||| |||||||| || || ||||||||||||||| Sbjct: 659 gaatggaagacaaagcttggaaatgtagtggtgatgtccttgaggtac 612
>dbj|AK112092.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-107-B01, full insert sequence Length = 1492 Score = 48.1 bits (24), Expect = 0.022 Identities = 39/44 (88%) Strand = Plus / Minus Query: 270 gaatgaaacacaaagctgggaaatgttgttgttatgtccttgag 313 ||||| || |||||||| |||||||| ||||| ||||||||||| Sbjct: 1018 gaatggaagacaaagcttggaaatgtagttgtgatgtccttgag 975
>dbj|AK111916.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033133I20, full insert sequence Length = 1393 Score = 48.1 bits (24), Expect = 0.022 Identities = 39/44 (88%) Strand = Plus / Minus Query: 270 gaatgaaacacaaagctgggaaatgttgttgttatgtccttgag 313 ||||| || |||||||| |||||||| ||||| ||||||||||| Sbjct: 937 gaatggaagacaaagcttggaaatgtagttgtgatgtccttgag 894
>dbj|AK111887.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033068L17, full insert sequence Length = 1511 Score = 48.1 bits (24), Expect = 0.022 Identities = 42/48 (87%) Strand = Plus / Minus Query: 270 gaatgaaacacaaagctgggaaatgttgttgttatgtccttgaggtac 317 ||||| || |||||||| |||||||| || || ||||||||||||||| Sbjct: 1032 gaatggaagacaaagcttggaaatgtagtggtgatgtccttgaggtac 985
>ref|NM_118791.2| Arabidopsis thaliana ATCBL3 (CALCINEURIN B-LIKE 3) AT4G26570 (ATCBL3) transcript variant AT4G26570.1 mRNA, complete cds Length = 1058 Score = 46.1 bits (23), Expect = 0.086 Identities = 32/35 (91%) Strand = Plus / Minus Query: 276 aacacaaagctgggaaatgttgttgttatgtcctt 310 ||||||||||| |||||||| |||||||| ||||| Sbjct: 872 aacacaaagctcggaaatgtagttgttatatcctt 838
>ref|NM_179118.1| Arabidopsis thaliana ATCBL3 (CALCINEURIN B-LIKE 3) AT4G26570 (ATCBL3) transcript variant AT4G26570.2 mRNA, complete cds Length = 1072 Score = 46.1 bits (23), Expect = 0.086 Identities = 32/35 (91%) Strand = Plus / Minus Query: 276 aacacaaagctgggaaatgttgttgttatgtcctt 310 ||||||||||| |||||||| |||||||| ||||| Sbjct: 884 aacacaaagctcggaaatgtagttgttatatcctt 850
>gb|AY128880.1| Arabidopsis thaliana calcineurin B-like protein 3 (At4g26570) mRNA, complete cds Length = 723 Score = 46.1 bits (23), Expect = 0.086 Identities = 32/35 (91%) Strand = Plus / Minus Query: 276 aacacaaagctgggaaatgttgttgttatgtcctt 310 ||||||||||| |||||||| |||||||| ||||| Sbjct: 656 aacacaaagctcggaaatgtagttgttatatcctt 622
>gb|AY072441.1| Arabidopsis thaliana calcineurin B-like protein 3 (At4g26570) mRNA, complete cds Length = 1058 Score = 46.1 bits (23), Expect = 0.086 Identities = 32/35 (91%) Strand = Plus / Minus Query: 276 aacacaaagctgggaaatgttgttgttatgtcctt 310 ||||||||||| |||||||| |||||||| ||||| Sbjct: 872 aacacaaagctcggaaatgtagttgttatatcctt 838
>gb|AY085344.1| Arabidopsis thaliana clone 14713 mRNA, complete sequence Length = 1060 Score = 46.1 bits (23), Expect = 0.086 Identities = 32/35 (91%) Strand = Plus / Minus Query: 276 aacacaaagctgggaaatgttgttgttatgtcctt 310 ||||||||||| |||||||| |||||||| ||||| Sbjct: 872 aacacaaagctcggaaatgtagttgttatatcctt 838
>gb|AF076253.1|AF076253 Arabidopsis thaliana calcineurin B-like protein 3 (CBL3) mRNA, complete cds Length = 1063 Score = 46.1 bits (23), Expect = 0.086 Identities = 32/35 (91%) Strand = Plus / Minus Query: 276 aacacaaagctgggaaatgttgttgttatgtcctt 310 ||||||||||| |||||||| |||||||| ||||| Sbjct: 857 aacacaaagctcggaaatgtagttgttatatcctt 823
>gb|AY134619.2| Pisum sativum calcineurin B (CnB) mRNA, complete cds Length = 972 Score = 44.1 bits (22), Expect = 0.34 Identities = 49/58 (84%) Strand = Plus / Minus Query: 256 tatcatcaacctctgaatgaaacacaaagctgggaaatgttgttgttatgtccttgag 313 ||||||| || | |||||| || |||||||| || |||||||| || ||||||||||| Sbjct: 804 tatcatctacttgtgaatggaatacaaagcttgggaatgttgtggtgatgtccttgag 747
>ref|NM_118790.1| Arabidopsis thaliana CBL7 (CALCINEURIN B-LIKE 7) AT4G26560 (CBL7) mRNA, complete cds Length = 645 Score = 44.1 bits (22), Expect = 0.34 Identities = 34/38 (89%) Strand = Plus / Minus Query: 276 aacacaaagctgggaaatgttgttgttatgtccttgag 313 ||||||||||| |||||||| ||||| || |||||||| Sbjct: 620 aacacaaagctcggaaatgtagttgtgatatccttgag 583
>gb|BT018557.1| Zea mays clone EL01N0439H03.d mRNA sequence Length = 1331 Score = 44.1 bits (22), Expect = 0.34 Identities = 49/58 (84%) Strand = Plus / Plus Query: 256 tatcatcaacctctgaatgaaacacaaagctgggaaatgttgttgttatgtccttgag 313 ||||||| |||| ||||| || |||||||| |||||||| || || ||||||||||| Sbjct: 346 tatcatcgacctgagaatggaagacaaagctcggaaatgtagtggtgatgtccttgag 403
>dbj|AP000052.1| Homo sapiens genomic DNA, chromosome 21q22.1, segment 23/28, complete sequence Length = 100000 Score = 44.1 bits (22), Expect = 0.34 Identities = 22/22 (100%) Strand = Plus / Minus Query: 115 agaaagaaagaaaaactatttc 136 |||||||||||||||||||||| Sbjct: 5463 agaaagaaagaaaaactatttc 5442
>gb|AF290434.1|AF290434 Arabidopsis thaliana calcineurin B-like protein 7 (CBL7) mRNA, complete cds Length = 645 Score = 44.1 bits (22), Expect = 0.34 Identities = 34/38 (89%) Strand = Plus / Minus Query: 276 aacacaaagctgggaaatgttgttgttatgtccttgag 313 ||||||||||| |||||||| ||||| || |||||||| Sbjct: 620 aacacaaagctcggaaatgtagttgtgatatccttgag 583
>gb|AY110621.1| Zea mays CL4371_1 mRNA sequence Length = 943 Score = 44.1 bits (22), Expect = 0.34 Identities = 49/58 (84%) Strand = Plus / Minus Query: 256 tatcatcaacctctgaatgaaacacaaagctgggaaatgttgttgttatgtccttgag 313 ||||||| |||| ||||| || |||||||| |||||||| || || ||||||||||| Sbjct: 573 tatcatcgacctgagaatggaagacaaagctcggaaatgtagtggtgatgtccttgag 516
>dbj|AP001719.1| Homo sapiens genomic DNA, chromosome 21q, section 63/105 Length = 340000 Score = 44.1 bits (22), Expect = 0.34 Identities = 22/22 (100%) Strand = Plus / Minus Query: 115 agaaagaaagaaaaactatttc 136 |||||||||||||||||||||| Sbjct: 226672 agaaagaaagaaaaactatttc 226651
>dbj|AP000166.1| Homo sapiens genomic DNA, chromosome 21q22.1, D21S226-AML region, clone B2344F14-f50E8, segment 2/9, complete sequence Length = 100000 Score = 44.1 bits (22), Expect = 0.34 Identities = 22/22 (100%) Strand = Plus / Minus Query: 115 agaaagaaagaaaaactatttc 136 |||||||||||||||||||||| Sbjct: 97431 agaaagaaagaaaaactatttc 97410
>dbj|AP000318.1| Homo sapiens genomic DNA, chromosome 21q22.1, D21S226-AML region, clone:Q6F8, complete sequence Length = 41522 Score = 44.1 bits (22), Expect = 0.34 Identities = 22/22 (100%) Strand = Plus / Minus Query: 115 agaaagaaagaaaaactatttc 136 |||||||||||||||||||||| Sbjct: 8115 agaaagaaagaaaaactatttc 8094
>gb|AC131921.9| Mus musculus chromosome 12, clone RP24-231P11, complete sequence Length = 163117 Score = 42.1 bits (21), Expect = 1.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 115 agaaagaaagaaaaactattt 135 ||||||||||||||||||||| Sbjct: 63806 agaaagaaagaaaaactattt 63786
>gb|AC125328.4| Mus musculus BAC clone RP23-181J14 from chromosome 15, complete sequence Length = 199674 Score = 42.1 bits (21), Expect = 1.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 115 agaaagaaagaaaaactattt 135 ||||||||||||||||||||| Sbjct: 187480 agaaagaaagaaaaactattt 187460
>gb|AC122291.4| Mus musculus BAC clone RP23-255N20 from 15, complete sequence Length = 184378 Score = 42.1 bits (21), Expect = 1.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 115 agaaagaaagaaaaactattt 135 ||||||||||||||||||||| Sbjct: 41852 agaaagaaagaaaaactattt 41832
>gb|AC161500.4| Mus musculus chromosome 7, clone RP23-145H5, complete sequence Length = 223833 Score = 42.1 bits (21), Expect = 1.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 117 aaagaaagaaaaactatttct 137 ||||||||||||||||||||| Sbjct: 98913 aaagaaagaaaaactatttct 98893
>emb|AL161565.2|ATCHRIV65 Arabidopsis thaliana DNA chromosome 4, contig fragment No. 65 Length = 198320 Score = 42.1 bits (21), Expect = 1.3 Identities = 27/29 (93%) Strand = Plus / Plus Query: 276 aacacaaagctgggaaatgttgttgttat 304 ||||||||||| |||||||| |||||||| Sbjct: 105808 aacacaaagctcggaaatgtagttgttat 105836
>emb|AL078465.1|ATT15N24 Arabidopsis thaliana DNA chromosome 4, BAC clone T15N24 (ESSA project) Length = 92657 Score = 42.1 bits (21), Expect = 1.3 Identities = 27/29 (93%) Strand = Plus / Plus Query: 276 aacacaaagctgggaaatgttgttgttat 304 ||||||||||| |||||||| |||||||| Sbjct: 37676 aacacaaagctcggaaatgtagttgttat 37704
>emb|AL022223.3|ATM3E9 Arabidopsis thaliana DNA chromosome 4, P1 clone M3E9 (ESSA project) Length = 80677 Score = 42.1 bits (21), Expect = 1.3 Identities = 27/29 (93%) Strand = Plus / Minus Query: 276 aacacaaagctgggaaatgttgttgttat 304 ||||||||||| |||||||| |||||||| Sbjct: 600 aacacaaagctcggaaatgtagttgttat 572
>emb|BX546480.9| Zebrafish DNA sequence from clone DKEY-175C11, complete sequence Length = 203056 Score = 42.1 bits (21), Expect = 1.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 115 agaaagaaagaaaaactattt 135 ||||||||||||||||||||| Sbjct: 32281 agaaagaaagaaaaactattt 32261
>gb|AC090526.3|AC090526 Homo sapiens chromosome 15 clone RP11-208K4 map 15q21.1, complete sequence Length = 168050 Score = 42.1 bits (21), Expect = 1.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 63 aacatacatgaatatttaaca 83 ||||||||||||||||||||| Sbjct: 71922 aacatacatgaatatttaaca 71902
>gb|AC138272.11| Mus musculus chromosome 7, clone RP23-91H13, complete sequence Length = 234237 Score = 42.1 bits (21), Expect = 1.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 117 aaagaaagaaaaactatttct 137 ||||||||||||||||||||| Sbjct: 202057 aaagaaagaaaaactatttct 202077
>gb|AC132286.3| Mus musculus BAC clone RP24-299C19 from 1, complete sequence Length = 192877 Score = 42.1 bits (21), Expect = 1.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 109 ccacccagaaagaaagaaaaa 129 ||||||||||||||||||||| Sbjct: 91933 ccacccagaaagaaagaaaaa 91913
>gb|AC138265.9| Mus musculus chromosome 5, clone RP23-41J13, complete sequence Length = 172279 Score = 40.1 bits (20), Expect = 5.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 115 agaaagaaagaaaaactatt 134 |||||||||||||||||||| Sbjct: 130197 agaaagaaagaaaaactatt 130216
>ref|NM_005717.2| Homo sapiens actin related protein 2/3 complex, subunit 5, 16kDa (ARPC5), mRNA Length = 2000 Score = 40.1 bits (20), Expect = 5.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 114 cagaaagaaagaaaaactat 133 |||||||||||||||||||| Sbjct: 1429 cagaaagaaagaaaaactat 1448
>gb|AC005351.1| Homo sapiens chromosome 5, BAC clone 78c6 (LBNL H191), complete sequence Length = 47812 Score = 40.1 bits (20), Expect = 5.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 115 agaaagaaagaaaaactatt 134 |||||||||||||||||||| Sbjct: 6766 agaaagaaagaaaaactatt 6747
>gb|AC102380.6| Mus musculus chromosome 3, clone RP24-179F24, complete sequence Length = 169209 Score = 40.1 bits (20), Expect = 5.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 113 ccagaaagaaagaaaaacta 132 |||||||||||||||||||| Sbjct: 74172 ccagaaagaaagaaaaacta 74153
>gb|BC057237.1| Homo sapiens actin related protein 2/3 complex, subunit 5, 16kDa, mRNA (cDNA clone MGC:62039 IMAGE:3931697), complete cds Length = 1666 Score = 40.1 bits (20), Expect = 5.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 114 cagaaagaaagaaaaactat 133 |||||||||||||||||||| Sbjct: 1349 cagaaagaaagaaaaactat 1368
>gb|CP000082.1| Psychrobacter arcticus 273-4, complete genome Length = 2650701 Score = 40.1 bits (20), Expect = 5.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 356 cacaaaattctcccattctg 375 |||||||||||||||||||| Sbjct: 2620565 cacaaaattctcccattctg 2620584
>gb|AC140302.2| Mus musculus BAC clone RP24-321I14 from chromosome 5, complete sequence Length = 174372 Score = 40.1 bits (20), Expect = 5.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 115 agaaagaaagaaaaactatt 134 |||||||||||||||||||| Sbjct: 57396 agaaagaaagaaaaactatt 57377
>gb|AC163010.2| Mus musculus chromosome 3, clone RP23-68L13, complete sequence Length = 172854 Score = 40.1 bits (20), Expect = 5.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 110 cacccagaaagaaagaaaaa 129 |||||||||||||||||||| Sbjct: 66460 cacccagaaagaaagaaaaa 66441
>ref|XM_486328.4| PREDICTED: Mus musculus hypothetical protein 6430704N06 (6430704N06), mRNA Length = 5301 Score = 40.1 bits (20), Expect = 5.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 111 acccagaaagaaagaaaaac 130 |||||||||||||||||||| Sbjct: 1284 acccagaaagaaagaaaaac 1303
>emb|CR848816.11| Zebrafish DNA sequence from clone DKEY-99F10 in linkage group 11, complete sequence Length = 158354 Score = 40.1 bits (20), Expect = 5.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 245 tcatgtaatgatatcatcaa 264 |||||||||||||||||||| Sbjct: 154108 tcatgtaatgatatcatcaa 154127
>gb|AE014308.1| Homo sapiens chromosome 13q34 schizophrenia region contig 1 section 5 of 11 of the complete sequence Length = 250029 Score = 40.1 bits (20), Expect = 5.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 273 tgaaacacaaagctgggaaa 292 |||||||||||||||||||| Sbjct: 232377 tgaaacacaaagctgggaaa 232396
>gb|AC128862.4| Rattus norvegicus 4 BAC CH230-419L6 (Children's Hospital Oakland Research Institute) complete sequence Length = 184149 Score = 40.1 bits (20), Expect = 5.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 115 agaaagaaagaaaaactatt 134 |||||||||||||||||||| Sbjct: 41238 agaaagaaagaaaaactatt 41257
>emb|AL731777.11| Human DNA sequence from clone RP11-482L14 on chromosome 6 Contains a cytochrome c (HCS) pseudogene, complete sequence Length = 130110 Score = 40.1 bits (20), Expect = 5.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 326 cattatcttcaacaaggaag 345 |||||||||||||||||||| Sbjct: 14692 cattatcttcaacaaggaag 14673
>emb|AL589740.4| Human DNA sequence from clone RP11-436D23 on chromosome 6 Contains part of a novel gene, complete sequence Length = 187863 Score = 40.1 bits (20), Expect = 5.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 114 cagaaagaaagaaaaactat 133 |||||||||||||||||||| Sbjct: 183777 cagaaagaaagaaaaactat 183796
>emb|AL354704.17| Human DNA sequence from clone RP11-630H9 on chromosome 9, complete sequence Length = 130718 Score = 40.1 bits (20), Expect = 5.3 Identities = 26/28 (92%) Strand = Plus / Plus Query: 108 accacccagaaagaaagaaaaactattt 135 |||| ||||||||||| ||||||||||| Sbjct: 3047 accaaccagaaagaaaaaaaaactattt 3074
>emb|AL161897.6| Human DNA sequence from clone RP11-262G14 on chromosome 13, complete sequence Length = 160455 Score = 40.1 bits (20), Expect = 5.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 273 tgaaacacaaagctgggaaa 292 |||||||||||||||||||| Sbjct: 119607 tgaaacacaaagctgggaaa 119626
>emb|AL137800.12| Human DNA sequence from clone RP1-127C7 on chromosome 1q25.1-31.1 Contains the 3' end of the C1orf16 gene for chromosome 1 open reading frame 16, the NCF2 gene for neutrophil cytosolic factor 2 (65kDa, chronic granulomatous disease, autosomal 2), a novel gene, the ARPC5 gene for actin related protein 2/3 complex subunit 5 (16kDa), the 5' end of the RGL1 gene for ral guanine nucleotide dissociation stimulator-like 1, a novel gene (MGC26594) and a CpG island, complete sequence Length = 185832 Score = 40.1 bits (20), Expect = 5.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 114 cagaaagaaagaaaaactat 133 |||||||||||||||||||| Sbjct: 127294 cagaaagaaagaaaaactat 127275
>emb|AL121724.19|HSDJ29P5 Human DNA sequence from clone RP1-29P5 on chromosome 6q16.1-16.2, complete sequence Length = 113644 Score = 40.1 bits (20), Expect = 5.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 114 cagaaagaaagaaaaactat 133 |||||||||||||||||||| Sbjct: 93650 cagaaagaaagaaaaactat 93669
>emb|AL034412.2|HS99M1 Human DNA sequence from clone RP6-99M1 on chromosome Xp11.1-11.4 Contains a novel pseudogene (GL004), complete sequence Length = 107049 Score = 40.1 bits (20), Expect = 5.3 Identities = 23/24 (95%) Strand = Plus / Plus Query: 115 agaaagaaagaaaaactatttctc 138 |||||||||||||||| ||||||| Sbjct: 86733 agaaagaaagaaaaaccatttctc 86756
>gb|AC115440.6| Rattus norvegicus 4 BAC CH230-183D1 (Children's Hospital Oakland Research Institute) complete sequence Length = 143322 Score = 40.1 bits (20), Expect = 5.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 115 agaaagaaagaaaaactatt 134 |||||||||||||||||||| Sbjct: 104867 agaaagaaagaaaaactatt 104886
>emb|CR926014.1| Pongo pygmaeus mRNA; cDNA DKFZp459E0320 (from clone DKFZp459E0320) Length = 1973 Score = 40.1 bits (20), Expect = 5.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 114 cagaaagaaagaaaaactat 133 |||||||||||||||||||| Sbjct: 1371 cagaaagaaagaaaaactat 1390
>emb|CR861069.1| Pongo pygmaeus mRNA; cDNA DKFZp459I2415 (from clone DKFZp459I2415) Length = 1937 Score = 40.1 bits (20), Expect = 5.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 114 cagaaagaaagaaaaactat 133 |||||||||||||||||||| Sbjct: 1371 cagaaagaaagaaaaactat 1390
>gb|AC111086.18| Mus musculus chromosome 7, clone RP23-152P5, complete sequence Length = 186200 Score = 40.1 bits (20), Expect = 5.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 111 acccagaaagaaagaaaaac 130 |||||||||||||||||||| Sbjct: 80740 acccagaaagaaagaaaaac 80721
>emb|BX571949.19| Zebrafish DNA sequence from clone DKEY-25F1 in linkage group 11, complete sequence Length = 149012 Score = 40.1 bits (20), Expect = 5.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 245 tcatgtaatgatatcatcaa 264 |||||||||||||||||||| Sbjct: 32256 tcatgtaatgatatcatcaa 32237
>emb|CR615806.1| full-length cDNA clone CS0DI027YJ18 of Placenta Cot 25-normalized of Homo sapiens (human) Length = 1856 Score = 40.1 bits (20), Expect = 5.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 114 cagaaagaaagaaaaactat 133 |||||||||||||||||||| Sbjct: 1319 cagaaagaaagaaaaactat 1338
>emb|CR626606.1| full-length cDNA clone CS0DM005YD07 of Fetal liver of Homo sapiens (human) Length = 1732 Score = 40.1 bits (20), Expect = 5.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 114 cagaaagaaagaaaaactat 133 |||||||||||||||||||| Sbjct: 1301 cagaaagaaagaaaaactat 1320
>emb|CR620410.1| full-length cDNA clone CS0DE011YG12 of Placenta of Homo sapiens (human) Length = 1278 Score = 40.1 bits (20), Expect = 5.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 114 cagaaagaaagaaaaactat 133 |||||||||||||||||||| Sbjct: 1080 cagaaagaaagaaaaactat 1099
>dbj|AK095424.1| Homo sapiens cDNA FLJ38105 fis, clone D3OST2001328, moderately similar to ARP2/3 COMPLEX 16 KDA SUBUNIT Length = 2456 Score = 40.1 bits (20), Expect = 5.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 114 cagaaagaaagaaaaactat 133 |||||||||||||||||||| Sbjct: 1900 cagaaagaaagaaaaactat 1919
>emb|CR611261.1| full-length cDNA clone CS0DG002YL05 of B cells (Ramos cell line) of Homo sapiens (human) Length = 1822 Score = 40.1 bits (20), Expect = 5.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 114 cagaaagaaagaaaaactat 133 |||||||||||||||||||| Sbjct: 1308 cagaaagaaagaaaaactat 1327
>emb|CR609655.1| full-length cDNA clone CS0DJ007YP17 of T cells (Jurkat cell line) Cot 10-normalized of Homo sapiens (human) Length = 566 Score = 40.1 bits (20), Expect = 5.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 114 cagaaagaaagaaaaactat 133 |||||||||||||||||||| Sbjct: 9 cagaaagaaagaaaaactat 28
>emb|CR609144.1| full-length cDNA clone CS0DI022YA15 of Placenta Cot 25-normalized of Homo sapiens (human) Length = 1801 Score = 40.1 bits (20), Expect = 5.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 114 cagaaagaaagaaaaactat 133 |||||||||||||||||||| Sbjct: 1285 cagaaagaaagaaaaactat 1304
>emb|CR604294.1| full-length cDNA clone CS0DI039YI16 of Placenta Cot 25-normalized of Homo sapiens (human) Length = 1816 Score = 40.1 bits (20), Expect = 5.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 114 cagaaagaaagaaaaactat 133 |||||||||||||||||||| Sbjct: 1299 cagaaagaaagaaaaactat 1318
>emb|CR599431.1| full-length cDNA clone CS0DI016YE16 of Placenta Cot 25-normalized of Homo sapiens (human) Length = 1856 Score = 40.1 bits (20), Expect = 5.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 114 cagaaagaaagaaaaactat 133 |||||||||||||||||||| Sbjct: 1336 cagaaagaaagaaaaactat 1355
>emb|CR598841.1| full-length cDNA clone CS0DF035YI08 of Fetal brain of Homo sapiens (human) Length = 1742 Score = 40.1 bits (20), Expect = 5.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 114 cagaaagaaagaaaaactat 133 |||||||||||||||||||| Sbjct: 1293 cagaaagaaagaaaaactat 1312
>emb|CR598282.1| full-length cDNA clone CS0DI087YP18 of Placenta Cot 25-normalized of Homo sapiens (human) Length = 1855 Score = 40.1 bits (20), Expect = 5.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 114 cagaaagaaagaaaaactat 133 |||||||||||||||||||| Sbjct: 1336 cagaaagaaagaaaaactat 1355
>emb|CR598054.1| full-length cDNA clone CS0DI001YE22 of Placenta Cot 25-normalized of Homo sapiens (human) Length = 1841 Score = 40.1 bits (20), Expect = 5.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 114 cagaaagaaagaaaaactat 133 |||||||||||||||||||| Sbjct: 1336 cagaaagaaagaaaaactat 1355
>emb|CR595907.1| full-length cDNA clone CS0DI028YE17 of Placenta Cot 25-normalized of Homo sapiens (human) Length = 1820 Score = 40.1 bits (20), Expect = 5.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 114 cagaaagaaagaaaaactat 133 |||||||||||||||||||| Sbjct: 1280 cagaaagaaagaaaaactat 1299
>emb|CR591801.1| full-length cDNA clone CS0DG004YC16 of B cells (Ramos cell line) of Homo sapiens (human) Length = 1800 Score = 40.1 bits (20), Expect = 5.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 114 cagaaagaaagaaaaactat 133 |||||||||||||||||||| Sbjct: 1276 cagaaagaaagaaaaactat 1295
>emb|CR591569.1| full-length cDNA clone CS0DH004YF20 of T cells (Jurkat cell line) of Homo sapiens (human) Length = 1691 Score = 40.1 bits (20), Expect = 5.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 114 cagaaagaaagaaaaactat 133 |||||||||||||||||||| Sbjct: 1310 cagaaagaaagaaaaactat 1329
>gb|AC020666.8| Oryza sativa chromosome 10 BAC OSJNBa0082M15 genomic sequence, complete sequence Length = 158550 Score = 40.1 bits (20), Expect = 5.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 370 attctgttctatctatttta 389 |||||||||||||||||||| Sbjct: 125806 attctgttctatctatttta 125825
>gb|AC021761.8| Homo sapiens chromosome 11, clone RP11-361M6, complete sequence Length = 182789 Score = 40.1 bits (20), Expect = 5.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 115 agaaagaaagaaaaactatt 134 |||||||||||||||||||| Sbjct: 82583 agaaagaaagaaaaactatt 82602
>gb|AF404023.1| HIV-1 isolate 420 from Netherlands envelope glycoprotein (env) gene, partial cds Length = 261 Score = 40.1 bits (20), Expect = 5.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 362 attctcccattctgttctat 381 |||||||||||||||||||| Sbjct: 210 attctcccattctgttctat 191
>dbj|AK141001.1| Mus musculus 16 days embryo head cDNA, RIKEN full-length enriched library, clone:C130095J21 product:hypothetical protein, full insert sequence Length = 3199 Score = 40.1 bits (20), Expect = 5.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 111 acccagaaagaaagaaaaac 130 |||||||||||||||||||| Sbjct: 1916 acccagaaagaaagaaaaac 1897
>gb|AC123762.9| Mus musculus chromosome 3, clone RP24-332B10, complete sequence Length = 205711 Score = 40.1 bits (20), Expect = 5.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 110 cacccagaaagaaagaaaaa 129 |||||||||||||||||||| Sbjct: 3598 cacccagaaagaaagaaaaa 3579
>dbj|AB169506.1| Macaca fascicularis brain cDNA, clone: QccE-12248, similar to human actin related protein 2/3 complex, subunit 5, 16kDa(ARPC5), mRNA, RefSeq: NM_005717.2 Length = 1906 Score = 40.1 bits (20), Expect = 5.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 114 cagaaagaaagaaaaactat 133 |||||||||||||||||||| Sbjct: 1339 cagaaagaaagaaaaactat 1358
>gb|AC011359.5|AC011359 Homo sapiens chromosome 5 clone CTC-370H24, complete sequence Length = 195887 Score = 40.1 bits (20), Expect = 5.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 115 agaaagaaagaaaaactatt 134 |||||||||||||||||||| Sbjct: 24286 agaaagaaagaaaaactatt 24305
>emb|AJ554881.1|HIM554881 Human immunodeficiency virus type 1 proviral partial env gene for gp120 protein, V3V5 sequence, isolate 97CM.MP646 Length = 632 Score = 40.1 bits (20), Expect = 5.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 362 attctcccattctgttctat 381 |||||||||||||||||||| Sbjct: 208 attctcccattctgttctat 189
>dbj|AK129598.1| Homo sapiens cDNA FLJ26087 fis, clone RCT05949, highly similar to ARP2/3 complex 16 kDa subunit Length = 1838 Score = 40.1 bits (20), Expect = 5.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 114 cagaaagaaagaaaaactat 133 |||||||||||||||||||| Sbjct: 1305 cagaaagaaagaaaaactat 1324
>gb|AF006088.1|AF006088 Homo sapiens Arp2/3 protein complex subunit p16-Arc (ARC16) mRNA, complete cds Length = 1833 Score = 40.1 bits (20), Expect = 5.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 114 cagaaagaaagaaaaactat 133 |||||||||||||||||||| Sbjct: 1262 cagaaagaaagaaaaactat 1281
>emb|AL928944.8| Zebrafish DNA sequence from clone DKEYP-2H4 in linkage group 8, complete sequence Length = 55565 Score = 40.1 bits (20), Expect = 5.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 60 acaaacatacatgaatattt 79 |||||||||||||||||||| Sbjct: 49406 acaaacatacatgaatattt 49387
>emb|AL672158.4| Zebrafish DNA sequence from clone BUSM1-266F07 in linkage group 8, complete sequence Length = 82188 Score = 40.1 bits (20), Expect = 5.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 60 acaaacatacatgaatattt 79 |||||||||||||||||||| Sbjct: 42466 acaaacatacatgaatattt 42447
>gb|AC116115.11| Mus musculus chromosome 6, clone RP23-60P18, complete sequence Length = 215571 Score = 40.1 bits (20), Expect = 5.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 115 agaaagaaagaaaaactatt 134 |||||||||||||||||||| Sbjct: 90773 agaaagaaagaaaaactatt 90754
>gb|AC113964.18| Mus musculus chromosome 16, clone RP23-31O16, complete sequence Length = 213851 Score = 40.1 bits (20), Expect = 5.3 Identities = 23/24 (95%) Strand = Plus / Plus Query: 370 attctgttctatctattttaccat 393 |||||||||||| ||||||||||| Sbjct: 123646 attctgttctatatattttaccat 123669
>gb|AC137723.6| Homo sapiens chromosome 17, clone RP11-1182P23, complete sequence Length = 57644 Score = 40.1 bits (20), Expect = 5.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 112 cccagaaagaaagaaaaact 131 |||||||||||||||||||| Sbjct: 3179 cccagaaagaaagaaaaact 3160
>gb|AC145207.2| Homo sapiens chromosome 17, clone RP11-498C9, complete sequence Length = 182848 Score = 40.1 bits (20), Expect = 5.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 112 cccagaaagaaagaaaaact 131 |||||||||||||||||||| Sbjct: 2785 cccagaaagaaagaaaaact 2804
>emb|Z69732.1|HSU141H12 Human DNA sequence from clone LL0XNC01-141H12 on chromosome Xp11, complete sequence Length = 40087 Score = 40.1 bits (20), Expect = 5.3 Identities = 23/24 (95%) Strand = Plus / Minus Query: 115 agaaagaaagaaaaactatttctc 138 |||||||||||||||| ||||||| Sbjct: 12920 agaaagaaagaaaaaccatttctc 12897 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 6,280,776 Number of Sequences: 3902068 Number of extensions: 6280776 Number of successful extensions: 229236 Number of sequences better than 10.0: 95 Number of HSP's better than 10.0 without gapping: 95 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 228945 Number of HSP's gapped (non-prelim): 291 length of query: 395 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 373 effective length of database: 17,147,199,772 effective search space: 6395905514956 effective search space used: 6395905514956 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)