ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbart59g02 |
|---|---|
| Clone Library Name | barley_pub |
>ref|NM_187980.1| Oryza sativa (japonica cultivar-group), Ozsa8400 predicted mRNA Length = 1008 Score = 81.8 bits (41), Expect = 1e-12 Identities = 41/41 (100%) Strand = Plus / Minus Query: 243 gtagttgttgagcctcctgcagttcttcctgatctccccct 283 ||||||||||||||||||||||||||||||||||||||||| Sbjct: 999 gtagttgttgagcctcctgcagttcttcctgatctccccct 959
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete sequence Length = 43261740 Score = 81.8 bits (41), Expect = 1e-12 Identities = 41/41 (100%) Strand = Plus / Minus Query: 243 gtagttgttgagcctcctgcagttcttcctgatctccccct 283 ||||||||||||||||||||||||||||||||||||||||| Sbjct: 8918785 gtagttgttgagcctcctgcagttcttcctgatctccccct 8918745 Score = 46.1 bits (23), Expect = 0.062 Identities = 26/27 (96%) Strand = Plus / Plus Query: 259 ctgcagttcttcctgatctcccccttg 285 ||||| ||||||||||||||||||||| Sbjct: 10746990 ctgcacttcttcctgatctcccccttg 10747016
>dbj|AP001383.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, clone:P0453A06 Length = 154378 Score = 81.8 bits (41), Expect = 1e-12 Identities = 41/41 (100%) Strand = Plus / Minus Query: 243 gtagttgttgagcctcctgcagttcttcctgatctccccct 283 ||||||||||||||||||||||||||||||||||||||||| Sbjct: 26540 gtagttgttgagcctcctgcagttcttcctgatctccccct 26500
>dbj|AK102117.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033084K24, full insert sequence Length = 1290 Score = 81.8 bits (41), Expect = 1e-12 Identities = 41/41 (100%) Strand = Plus / Minus Query: 243 gtagttgttgagcctcctgcagttcttcctgatctccccct 283 ||||||||||||||||||||||||||||||||||||||||| Sbjct: 1107 gtagttgttgagcctcctgcagttcttcctgatctccccct 1067
>dbj|AK061583.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-312-A08, full insert sequence Length = 1289 Score = 81.8 bits (41), Expect = 1e-12 Identities = 41/41 (100%) Strand = Plus / Minus Query: 243 gtagttgttgagcctcctgcagttcttcctgatctccccct 283 ||||||||||||||||||||||||||||||||||||||||| Sbjct: 1106 gtagttgttgagcctcctgcagttcttcctgatctccccct 1066
>tpe|BN000532.1| TPA: TPA_inf: Oryza sativa (japonica cultivar-group) prx3 gene for class III peroxidase 3 precursor, exons 1-4 Length = 1932 Score = 81.8 bits (41), Expect = 1e-12 Identities = 41/41 (100%) Strand = Plus / Minus Query: 243 gtagttgttgagcctcctgcagttcttcctgatctccccct 283 ||||||||||||||||||||||||||||||||||||||||| Sbjct: 1923 gtagttgttgagcctcctgcagttcttcctgatctccccct 1883
>gb|AY105947.1| Zea mays PCO084450 mRNA sequence Length = 1275 Score = 67.9 bits (34), Expect = 2e-08 Identities = 40/42 (95%) Strand = Plus / Minus Query: 237 tcagtggtagttgttgagcctcctgcagttcttcctgatctc 278 |||||||| |||||||||||||||||||||||||||||||| Sbjct: 1066 tcagtggtcattgttgagcctcctgcagttcttcctgatctc 1025
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 Score = 48.1 bits (24), Expect = 0.016 Identities = 33/36 (91%) Strand = Plus / Minus Query: 258 cctgcagttcttcctgatctcccccttggacccggt 293 |||||||||||||||||||| ||||| | ||||||| Sbjct: 14309076 cctgcagttcttcctgatctgcccctggtacccggt 14309041 Score = 44.1 bits (22), Expect = 0.25 Identities = 25/26 (96%) Strand = Plus / Minus Query: 258 cctgcagttcttcctgatctccccct 283 ||||||||||||||||||||| |||| Sbjct: 14294662 cctgcagttcttcctgatctcgccct 14294637 Score = 42.1 bits (21), Expect = 0.97 Identities = 24/25 (96%) Strand = Plus / Minus Query: 258 cctgcagttcttcctgatctccccc 282 |||||||||| |||||||||||||| Sbjct: 7078019 cctgcagttcctcctgatctccccc 7077995
>gb|AC082644.10| Oryza sativa chromosome 3 BAC OSJNBa0013M12 genomic sequence, complete sequence Length = 158714 Score = 48.1 bits (24), Expect = 0.016 Identities = 33/36 (91%) Strand = Plus / Minus Query: 258 cctgcagttcttcctgatctcccccttggacccggt 293 |||||||||||||||||||| ||||| | ||||||| Sbjct: 58305 cctgcagttcttcctgatctgcccctggtacccggt 58270 Score = 44.1 bits (22), Expect = 0.25 Identities = 25/26 (96%) Strand = Plus / Minus Query: 258 cctgcagttcttcctgatctccccct 283 ||||||||||||||||||||| |||| Sbjct: 43891 cctgcagttcttcctgatctcgccct 43866
>gb|AC144427.1| Oryza sativa (japonica cultivar-group) chromosome 3 clone OSJNAb0012F18, complete sequence Length = 122159 Score = 48.1 bits (24), Expect = 0.016 Identities = 33/36 (91%) Strand = Plus / Minus Query: 258 cctgcagttcttcctgatctcccccttggacccggt 293 |||||||||||||||||||| ||||| | ||||||| Sbjct: 120464 cctgcagttcttcctgatctgcccctggtacccggt 120429 Score = 44.1 bits (22), Expect = 0.25 Identities = 25/26 (96%) Strand = Plus / Minus Query: 258 cctgcagttcttcctgatctccccct 283 ||||||||||||||||||||| |||| Sbjct: 106050 cctgcagttcttcctgatctcgccct 106025
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 48.1 bits (24), Expect = 0.016 Identities = 33/36 (91%) Strand = Plus / Minus Query: 258 cctgcagttcttcctgatctcccccttggacccggt 293 |||||||||||||||||||| ||||| | ||||||| Sbjct: 14304051 cctgcagttcttcctgatctgcccctggtacccggt 14304016 Score = 44.1 bits (22), Expect = 0.25 Identities = 25/26 (96%) Strand = Plus / Minus Query: 258 cctgcagttcttcctgatctccccct 283 ||||||||||||||||||||| |||| Sbjct: 14289637 cctgcagttcttcctgatctcgccct 14289612 Score = 42.1 bits (21), Expect = 0.97 Identities = 24/25 (96%) Strand = Plus / Minus Query: 258 cctgcagttcttcctgatctccccc 282 |||||||||| |||||||||||||| Sbjct: 7075914 cctgcagttcctcctgatctccccc 7075890
>dbj|AK120411.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013092B13, full insert sequence Length = 1422 Score = 48.1 bits (24), Expect = 0.016 Identities = 33/36 (91%) Strand = Plus / Minus Query: 258 cctgcagttcttcctgatctcccccttggacccggt 293 |||||||||||||||||||| ||||| | ||||||| Sbjct: 1109 cctgcagttcttcctgatctgcccctggtacccggt 1074
>dbj|AK099751.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013092B12, full insert sequence Length = 1422 Score = 48.1 bits (24), Expect = 0.016 Identities = 33/36 (91%) Strand = Plus / Minus Query: 258 cctgcagttcttcctgatctcccccttggacccggt 293 |||||||||||||||||||| ||||| | ||||||| Sbjct: 1109 cctgcagttcttcctgatctgcccctggtacccggt 1074
>tpe|BN000574.1| TPA: TPA_inf: Oryza sativa (japonica cultivar-group) prx45 gene for class III peroxidase 45 precursor, exons 1-2 Length = 1091 Score = 48.1 bits (24), Expect = 0.016 Identities = 33/36 (91%) Strand = Plus / Minus Query: 258 cctgcagttcttcctgatctcccccttggacccggt 293 |||||||||||||||||||| ||||| | ||||||| Sbjct: 1076 cctgcagttcttcctgatctgcccctggtacccggt 1041
>gb|AY206414.1| Ipomoea batatas anionic peroxidase swpb3 mRNA, complete cds Length = 1290 Score = 46.1 bits (23), Expect = 0.062 Identities = 23/23 (100%) Strand = Plus / Minus Query: 256 ctcctgcagttcttcctgatctc 278 ||||||||||||||||||||||| Sbjct: 1000 ctcctgcagttcttcctgatctc 978
>ref|NM_183638.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 1044 Score = 46.1 bits (23), Expect = 0.062 Identities = 26/27 (96%) Strand = Plus / Minus Query: 259 ctgcagttcttcctgatctcccccttg 285 ||||| ||||||||||||||||||||| Sbjct: 1022 ctgcacttcttcctgatctcccccttg 996
>gb|AY311597.1| Gossypium hirsutum class III peroxidase (pod7) mRNA, complete cds Length = 1282 Score = 46.1 bits (23), Expect = 0.062 Identities = 23/23 (100%) Strand = Plus / Minus Query: 259 ctgcagttcttcctgatctcccc 281 ||||||||||||||||||||||| Sbjct: 1010 ctgcagttcttcctgatctcccc 988
>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete sequence Length = 27566993 Score = 46.1 bits (23), Expect = 0.062 Identities = 23/23 (100%) Strand = Plus / Minus Query: 259 ctgcagttcttcctgatctcccc 281 ||||||||||||||||||||||| Sbjct: 624888 ctgcagttcttcctgatctcccc 624866 Score = 42.1 bits (21), Expect = 0.97 Identities = 21/21 (100%) Strand = Plus / Minus Query: 257 tcctgcagttcttcctgatct 277 ||||||||||||||||||||| Sbjct: 614834 tcctgcagttcttcctgatct 614814
>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete sequence Length = 28386948 Score = 46.1 bits (23), Expect = 0.062 Identities = 23/23 (100%) Strand = Plus / Minus Query: 259 ctgcagttcttcctgatctcccc 281 ||||||||||||||||||||||| Sbjct: 584391 ctgcagttcttcctgatctcccc 584369 Score = 42.1 bits (21), Expect = 0.97 Identities = 21/21 (100%) Strand = Plus / Minus Query: 257 tcctgcagttcttcctgatct 277 ||||||||||||||||||||| Sbjct: 571861 tcctgcagttcttcctgatct 571841
>dbj|AP002820.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0702D12 Length = 137332 Score = 46.1 bits (23), Expect = 0.062 Identities = 26/27 (96%) Strand = Plus / Plus Query: 259 ctgcagttcttcctgatctcccccttg 285 ||||| ||||||||||||||||||||| Sbjct: 69804 ctgcacttcttcctgatctcccccttg 69830
>dbj|AK104781.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-039-C08, full insert sequence Length = 1331 Score = 46.1 bits (23), Expect = 0.062 Identities = 26/27 (96%) Strand = Plus / Minus Query: 259 ctgcagttcttcctgatctcccccttg 285 ||||| ||||||||||||||||||||| Sbjct: 1109 ctgcacttcttcctgatctcccccttg 1083
>dbj|AK104388.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-201-G02, full insert sequence Length = 1331 Score = 46.1 bits (23), Expect = 0.062 Identities = 26/27 (96%) Strand = Plus / Minus Query: 259 ctgcagttcttcctgatctcccccttg 285 ||||| ||||||||||||||||||||| Sbjct: 1109 ctgcacttcttcctgatctcccccttg 1083
>dbj|AK069456.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023019E08, full insert sequence Length = 1319 Score = 46.1 bits (23), Expect = 0.062 Identities = 23/23 (100%) Strand = Plus / Minus Query: 259 ctgcagttcttcctgatctcccc 281 ||||||||||||||||||||||| Sbjct: 1094 ctgcagttcttcctgatctcccc 1072
>dbj|AK068755.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013159G18, full insert sequence Length = 1345 Score = 46.1 bits (23), Expect = 0.062 Identities = 26/27 (96%) Strand = Plus / Minus Query: 259 ctgcagttcttcctgatctcccccttg 285 ||||| ||||||||||||||||||||| Sbjct: 1103 ctgcacttcttcctgatctcccccttg 1077
>tpe|BN000664.1| TPA: TPA_inf: Oryza sativa (japonica cultivar-group) prx135 gene for class III peroxidase 135 precursor, exons 1-4 Length = 2198 Score = 46.1 bits (23), Expect = 0.062 Identities = 23/23 (100%) Strand = Plus / Minus Query: 259 ctgcagttcttcctgatctcccc 281 ||||||||||||||||||||||| Sbjct: 2185 ctgcagttcttcctgatctcccc 2163
>tpe|BN000659.1| TPA: TPA_inf: Oryza sativa (japonica cultivar-group) prx130 gene for class III peroxidase 130 precursor, exons 1-4 Length = 2195 Score = 46.1 bits (23), Expect = 0.062 Identities = 23/23 (100%) Strand = Plus / Minus Query: 259 ctgcagttcttcctgatctcccc 281 ||||||||||||||||||||||| Sbjct: 2182 ctgcagttcttcctgatctcccc 2160
>tpe|BN000540.1| TPA: TPA_inf: Oryza sativa (japonica cultivar-group) prx11 gene for class III peroxidase 11 precursor, exons 1-2 Length = 1255 Score = 46.1 bits (23), Expect = 0.062 Identities = 26/27 (96%) Strand = Plus / Minus Query: 259 ctgcagttcttcctgatctcccccttg 285 ||||| ||||||||||||||||||||| Sbjct: 1233 ctgcacttcttcctgatctcccccttg 1207
>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence Length = 28369397 Score = 46.1 bits (23), Expect = 0.062 Identities = 23/23 (100%) Strand = Plus / Minus Query: 259 ctgcagttcttcctgatctcccc 281 ||||||||||||||||||||||| Sbjct: 584391 ctgcagttcttcctgatctcccc 584369 Score = 42.1 bits (21), Expect = 0.97 Identities = 21/21 (100%) Strand = Plus / Minus Query: 257 tcctgcagttcttcctgatct 277 ||||||||||||||||||||| Sbjct: 571861 tcctgcagttcttcctgatct 571841
>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence Length = 27492551 Score = 46.1 bits (23), Expect = 0.062 Identities = 23/23 (100%) Strand = Plus / Minus Query: 259 ctgcagttcttcctgatctcccc 281 ||||||||||||||||||||||| Sbjct: 624888 ctgcagttcttcctgatctcccc 624866 Score = 42.1 bits (21), Expect = 0.97 Identities = 21/21 (100%) Strand = Plus / Minus Query: 257 tcctgcagttcttcctgatct 277 ||||||||||||||||||||| Sbjct: 614834 tcctgcagttcttcctgatct 614814
>emb|BX000512.1|CNS08CE2 Oryza sativa chromosome 11, . BAC OSJNBa0025K19 of library OSJNBa from chromosome 11 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 181322 Score = 46.1 bits (23), Expect = 0.062 Identities = 23/23 (100%) Strand = Plus / Plus Query: 259 ctgcagttcttcctgatctcccc 281 ||||||||||||||||||||||| Sbjct: 158581 ctgcagttcttcctgatctcccc 158603 Score = 42.1 bits (21), Expect = 0.97 Identities = 21/21 (100%) Strand = Plus / Plus Query: 257 tcctgcagttcttcctgatct 277 ||||||||||||||||||||| Sbjct: 171111 tcctgcagttcttcctgatct 171131
>emb|BX000510.1|CNS08CE0 Oryza sativa chromosome 12, . BAC OJ1769_D07 of library Monsanto from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 115859 Score = 46.1 bits (23), Expect = 0.062 Identities = 23/23 (100%) Strand = Plus / Plus Query: 259 ctgcagttcttcctgatctcccc 281 ||||||||||||||||||||||| Sbjct: 23955 ctgcagttcttcctgatctcccc 23977 Score = 42.1 bits (21), Expect = 0.97 Identities = 21/21 (100%) Strand = Plus / Plus Query: 257 tcctgcagttcttcctgatct 277 ||||||||||||||||||||| Sbjct: 34009 tcctgcagttcttcctgatct 34029
>emb|AL731628.4|OSJN00282 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBb0088C09, complete sequence Length = 96079 Score = 44.1 bits (22), Expect = 0.25 Identities = 28/30 (93%) Strand = Plus / Minus Query: 249 gttgagcctcctgcagttcttcctgatctc 278 ||||| ||||||||||||| |||||||||| Sbjct: 67622 gttgaccctcctgcagttcatcctgatctc 67593
>gb|AC104836.2| Homo sapiens chromosome 1 clone RP4-621B10, complete sequence Length = 142726 Score = 44.1 bits (22), Expect = 0.25 Identities = 22/22 (100%) Strand = Plus / Plus Query: 214 gattaaacattcaaacactcag 235 |||||||||||||||||||||| Sbjct: 80766 gattaaacattcaaacactcag 80787
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete sequence Length = 35498469 Score = 44.1 bits (22), Expect = 0.25 Identities = 28/30 (93%) Strand = Plus / Minus Query: 249 gttgagcctcctgcagttcttcctgatctc 278 ||||| ||||||||||||| |||||||||| Sbjct: 20964390 gttgaccctcctgcagttcatcctgatctc 20964361
>dbj|AK108989.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-153-F11, full insert sequence Length = 1351 Score = 44.1 bits (22), Expect = 0.25 Identities = 28/30 (93%) Strand = Plus / Minus Query: 249 gttgagcctcctgcagttcttcctgatctc 278 ||||| ||||||||||||| |||||||||| Sbjct: 1111 gttgaccctcctgcagttcatcctgatctc 1082
>tpe|BN000583.1| TPA: TPA_inf: Oryza sativa (japonica cultivar-group) prx54 gene for class III peroxidase 54 precursor, exon 1 Length = 1038 Score = 44.1 bits (22), Expect = 0.25 Identities = 28/30 (93%) Strand = Plus / Minus Query: 249 gttgagcctcctgcagttcttcctgatctc 278 ||||| ||||||||||||| |||||||||| Sbjct: 1029 gttgaccctcctgcagttcatcctgatctc 1000
>tpe|BN000573.1| TPA: TPA_inf: Oryza sativa (japonica cultivar-group) prx44 gene for class III peroxidase 44 precursor, exons 1-2 Length = 1761 Score = 44.1 bits (22), Expect = 0.25 Identities = 25/26 (96%) Strand = Plus / Minus Query: 258 cctgcagttcttcctgatctccccct 283 ||||||||||||||||||||| |||| Sbjct: 1749 cctgcagttcttcctgatctcgccct 1724
>emb|AL731590.4|OSJN00233 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0035I04, complete sequence Length = 140890 Score = 44.1 bits (22), Expect = 0.25 Identities = 28/30 (93%) Strand = Plus / Minus Query: 249 gttgagcctcctgcagttcttcctgatctc 278 ||||| ||||||||||||| |||||||||| Sbjct: 9796 gttgaccctcctgcagttcatcctgatctc 9767
>ref|XM_470636.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 1005 Score = 42.1 bits (21), Expect = 0.97 Identities = 24/25 (96%) Strand = Plus / Minus Query: 258 cctgcagttcttcctgatctccccc 282 |||||||||| |||||||||||||| Sbjct: 987 cctgcagttcctcctgatctccccc 963
>ref|XM_479283.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1035 Score = 42.1 bits (21), Expect = 0.97 Identities = 21/21 (100%) Strand = Plus / Minus Query: 258 cctgcagttcttcctgatctc 278 ||||||||||||||||||||| Sbjct: 1023 cctgcagttcttcctgatctc 1003
>gb|U53341.2| Caenorhabditis elegans cosmid F49E10, complete sequence Length = 42909 Score = 42.1 bits (21), Expect = 0.97 Identities = 21/21 (100%) Strand = Plus / Minus Query: 49 ttcatcattgctaccacatgc 69 ||||||||||||||||||||| Sbjct: 32746 ttcatcattgctaccacatgc 32726
>gb|AC183834.3| Pan troglodytes BAC clone CH251-191C17 from chromosome 10, complete sequence Length = 178562 Score = 42.1 bits (21), Expect = 0.97 Identities = 21/21 (100%) Strand = Plus / Minus Query: 2 gaaaaagatcaaatattttaa 22 ||||||||||||||||||||| Sbjct: 149916 gaaaaagatcaaatattttaa 149896
>emb|AL672187.12| Human DNA sequence from clone RP11-592B15 on chromosome 10 Contains the gene for a novel protein similar to ARF GTPase-activating protein (MRIP2), a poly (ADP-ribose) glycohydrolase (PARG) pseudogene, a novel gene, gene LOC347774, a novel gene, a ribosomal protein L35a (RPL35A) pseudogene, the TIMM23B gene for translocase of inner mitochondrial membrane 23 homolog B (yeast) and two CpG islands, complete sequence Length = 211435 Score = 42.1 bits (21), Expect = 0.97 Identities = 21/21 (100%) Strand = Plus / Minus Query: 2 gaaaaagatcaaatattttaa 22 ||||||||||||||||||||| Sbjct: 207055 gaaaaagatcaaatattttaa 207035 Score = 42.1 bits (21), Expect = 0.97 Identities = 21/21 (100%) Strand = Plus / Plus Query: 2 gaaaaagatcaaatattttaa 22 ||||||||||||||||||||| Sbjct: 79789 gaaaaagatcaaatattttaa 79809
>emb|AL450342.16| Human DNA sequence from clone RP11-481A12 on chromosome 10 Contains a pseudogene similar to part of ral guanine nucleotide dissociation stimulator (RALGDS), the MSMB gene for microseminoprotein beta, the NCOA4 gene for nuclear receptor coactivator 4, the TIMM23 gene for translocase of inner mitochondrial membrane 23, a poly (ADP-ribose) glycohydrolase (PARG) pseudogene, a ribosomal protein L35a (RPL35A) pseudogene and three CpG islands, complete sequence Length = 190015 Score = 42.1 bits (21), Expect = 0.97 Identities = 21/21 (100%) Strand = Plus / Plus Query: 2 gaaaaagatcaaatattttaa 22 ||||||||||||||||||||| Sbjct: 67273 gaaaaagatcaaatattttaa 67293
>emb|AL442003.8| Human DNA sequence from clone RP11-324H6 on chromosome 10 Contains the gene for a novel protein similar to ARF GTPase-activating protein (MRIP2), the 3' end of the gene for translocase of inner mitochondrial membrane 23 (TIMM23), a novel gene, a solute carrier family 9 isoform 3 (SLC9A3) pseudogene, a novel gene, the 5' end of gene FLJ10824, a pseudogene similar to part of KIAA0592/FLJ10824 and two CpG islands, complete sequence Length = 163570 Score = 42.1 bits (21), Expect = 0.97 Identities = 21/21 (100%) Strand = Plus / Minus Query: 2 gaaaaagatcaaatattttaa 22 ||||||||||||||||||||| Sbjct: 4867 gaaaaagatcaaatattttaa 4847
>emb|AL137060.13| Human DNA sequence from clone RP11-34F20 on chromosome 13 Contains the 3' end of the RFP2 gene for ret finger protein 2, the DLEU2 gene for deleted in lymphocytic leukemia 2 (LEU2 BCMSUN), the 5' end of the DLEU1 gene for deleted in lymphocytic leukemia 1 (BCMS LEU1), a ribosomal protein L18 (RPL18) pseudogene, a novel gene and four CpG islands, complete sequence Length = 154887 Score = 42.1 bits (21), Expect = 0.97 Identities = 21/21 (100%) Strand = Plus / Plus Query: 178 taaaccagaacatgacaccaa 198 ||||||||||||||||||||| Sbjct: 61502 taaaccagaacatgacaccaa 61522
>gb|AC012044.15| Homo sapiens chromosome 10 clone RP11-175I17, complete sequence Length = 172110 Score = 42.1 bits (21), Expect = 0.97 Identities = 21/21 (100%) Strand = Plus / Minus Query: 2 gaaaaagatcaaatattttaa 22 ||||||||||||||||||||| Sbjct: 63380 gaaaaagatcaaatattttaa 63360
>gb|AC182581.3| Pan troglodytes BAC clone CH251-711L14 from chromosome 10, complete sequence Length = 197345 Score = 42.1 bits (21), Expect = 0.97 Identities = 21/21 (100%) Strand = Plus / Plus Query: 2 gaaaaagatcaaatattttaa 22 ||||||||||||||||||||| Sbjct: 87237 gaaaaagatcaaatattttaa 87257
>gb|AC103891.2| Oryza sativa (japonica cultivar-group) chromosome 3 clone OJ1175C11, complete sequence Length = 123620 Score = 42.1 bits (21), Expect = 0.97 Identities = 24/25 (96%) Strand = Plus / Plus Query: 258 cctgcagttcttcctgatctccccc 282 |||||||||| |||||||||||||| Sbjct: 4346 cctgcagttcctcctgatctccccc 4370
>gb|AF440619.1|AF440619 Homo sapiens 13q14 chronic lymphocytic leukemia suppressor locus section 1 of 2 Length = 350000 Score = 42.1 bits (21), Expect = 0.97 Identities = 21/21 (100%) Strand = Plus / Plus Query: 178 taaaccagaacatgacaccaa 198 ||||||||||||||||||||| Sbjct: 118690 taaaccagaacatgacaccaa 118710
>gb|DP000052.1| Sus scrofa target 126 genomic scaffold Length = 432382 Score = 42.1 bits (21), Expect = 0.97 Identities = 24/25 (96%) Strand = Plus / Plus Query: 160 aaccacacacctgcttattaaacca 184 |||||||||||||||| |||||||| Sbjct: 264747 aaccacacacctgcttgttaaacca 264771
>gb|AF279660.2|AF279660 Homo sapiens CAR (RFP2) gene, complete cds; DLEU2 and DLEU1 genes, complete sequence; and RPL18 and p48/Hip pseudogenes, complete sequence Length = 347503 Score = 42.1 bits (21), Expect = 0.97 Identities = 21/21 (100%) Strand = Plus / Plus Query: 178 taaaccagaacatgacaccaa 198 ||||||||||||||||||||| Sbjct: 70989 taaaccagaacatgacaccaa 71009
>gb|AC069475.27| Homo sapiens chromosome 13 clone 317g11 map 13q14, complete sequence Length = 153092 Score = 42.1 bits (21), Expect = 0.97 Identities = 21/21 (100%) Strand = Plus / Plus Query: 178 taaaccagaacatgacaccaa 198 ||||||||||||||||||||| Sbjct: 19303 taaaccagaacatgacaccaa 19323
>ref|NM_076585.2| Caenorhabditis elegans F49E10.2b (F49E10.2) mRNA, complete cds Length = 2852 Score = 42.1 bits (21), Expect = 0.97 Identities = 21/21 (100%) Strand = Plus / Minus Query: 49 ttcatcattgctaccacatgc 69 ||||||||||||||||||||| Sbjct: 801 ttcatcattgctaccacatgc 781
>ref|NM_076586.2| Caenorhabditis elegans F49E10.2a (F49E10.2) mRNA, complete cds Length = 2424 Score = 42.1 bits (21), Expect = 0.97 Identities = 21/21 (100%) Strand = Plus / Minus Query: 49 ttcatcattgctaccacatgc 69 ||||||||||||||||||||| Sbjct: 852 ttcatcattgctaccacatgc 832
>gb|AF119900.1|AF119900 Homo sapiens PRO2822 mRNA, complete cds Length = 1797 Score = 42.1 bits (21), Expect = 0.97 Identities = 21/21 (100%) Strand = Plus / Plus Query: 2 gaaaaagatcaaatattttaa 22 ||||||||||||||||||||| Sbjct: 1397 gaaaaagatcaaatattttaa 1417
>gb|AF334404.1|AF334404 Homo sapiens chromosome 13q14 BAC clone CITB-369L16, complete sequence Length = 154868 Score = 42.1 bits (21), Expect = 0.97 Identities = 21/21 (100%) Strand = Plus / Plus Query: 178 taaaccagaacatgacaccaa 198 ||||||||||||||||||||| Sbjct: 118690 taaaccagaacatgacaccaa 118710
>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete sequence Length = 29644043 Score = 42.1 bits (21), Expect = 0.97 Identities = 21/21 (100%) Strand = Plus / Plus Query: 258 cctgcagttcttcctgatctc 278 ||||||||||||||||||||| Sbjct: 26563667 cctgcagttcttcctgatctc 26563687 Score = 42.1 bits (21), Expect = 0.97 Identities = 21/21 (100%) Strand = Plus / Minus Query: 258 cctgcagttcttcctgatctc 278 ||||||||||||||||||||| Sbjct: 26563007 cctgcagttcttcctgatctc 26562987
>gb|AC137696.2| Genomic sequence for Oryza sativa, Nipponbare strain, clone OSJNBa0049C20, from chromosome 3, complete sequence Length = 136098 Score = 42.1 bits (21), Expect = 0.97 Identities = 24/25 (96%) Strand = Plus / Plus Query: 258 cctgcagttcttcctgatctccccc 282 |||||||||| |||||||||||||| Sbjct: 116319 cctgcagttcctcctgatctccccc 116343
>dbj|AP005292.5| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC clone:OJ1340_C08 Length = 192167 Score = 42.1 bits (21), Expect = 0.97 Identities = 21/21 (100%) Strand = Plus / Plus Query: 258 cctgcagttcttcctgatctc 278 ||||||||||||||||||||| Sbjct: 108938 cctgcagttcttcctgatctc 108958 Score = 42.1 bits (21), Expect = 0.97 Identities = 21/21 (100%) Strand = Plus / Minus Query: 258 cctgcagttcttcctgatctc 278 ||||||||||||||||||||| Sbjct: 108278 cctgcagttcttcctgatctc 108258
>dbj|AK110555.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-168-C06, full insert sequence Length = 1304 Score = 42.1 bits (21), Expect = 0.97 Identities = 21/21 (100%) Strand = Plus / Minus Query: 258 cctgcagttcttcctgatctc 278 ||||||||||||||||||||| Sbjct: 1096 cctgcagttcttcctgatctc 1076
>dbj|AK108385.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-142-E11, full insert sequence Length = 1139 Score = 42.1 bits (21), Expect = 0.97 Identities = 21/21 (100%) Strand = Plus / Minus Query: 257 tcctgcagttcttcctgatct 277 ||||||||||||||||||||| Sbjct: 966 tcctgcagttcttcctgatct 946
>tpe|BN000665.1| TPA: TPA_inf: Oryza sativa (japonica cultivar-group) prx136 gene for class III peroxidase 136 precursor, exons 1-4 Length = 1530 Score = 42.1 bits (21), Expect = 0.97 Identities = 21/21 (100%) Strand = Plus / Minus Query: 257 tcctgcagttcttcctgatct 277 ||||||||||||||||||||| Sbjct: 1519 tcctgcagttcttcctgatct 1499
>tpe|BN000660.1| TPA: TPA_inf: Oryza sativa (japonica cultivar-group) prx131 gene for class III peroxidase 131 precursor, exons 1-4 Length = 1528 Score = 42.1 bits (21), Expect = 0.97 Identities = 21/21 (100%) Strand = Plus / Minus Query: 257 tcctgcagttcttcctgatct 277 ||||||||||||||||||||| Sbjct: 1517 tcctgcagttcttcctgatct 1497
>tpe|BN000637.1| TPA: TPA_inf: Oryza sativa (japonica cultivar-group) prx108 gene for class III peroxidase 108 precursor, exon 1 Length = 1035 Score = 42.1 bits (21), Expect = 0.97 Identities = 21/21 (100%) Strand = Plus / Minus Query: 258 cctgcagttcttcctgatctc 278 ||||||||||||||||||||| Sbjct: 1023 cctgcagttcttcctgatctc 1003
>tpe|BN000566.1| TPA: TPA_inf: Oryza sativa (japonica cultivar-group) prx37 gene for class III peroxidase 37 precursor, exons 1-3 Length = 1188 Score = 42.1 bits (21), Expect = 0.97 Identities = 24/25 (96%) Strand = Plus / Minus Query: 258 cctgcagttcttcctgatctccccc 282 |||||||||| |||||||||||||| Sbjct: 1170 cctgcagttcctcctgatctccccc 1146
>emb|CR392353.6| Zebrafish DNA sequence from clone CH211-9D19 in linkage group 11, complete sequence Length = 183599 Score = 42.1 bits (21), Expect = 0.97 Identities = 21/21 (100%) Strand = Plus / Minus Query: 232 tcagttcagtggtagttgttg 252 ||||||||||||||||||||| Sbjct: 135724 tcagttcagtggtagttgttg 135704
>gb|AC183964.3| Pan troglodytes BAC clone CH251-654L7 from chromosome 12, complete sequence Length = 213075 Score = 40.1 bits (20), Expect = 3.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 188 catgacaccaactccactcc 207 |||||||||||||||||||| Sbjct: 97241 catgacaccaactccactcc 97260
>ref|XM_647817.1| Entamoeba histolytica HM-1:IMSS Ras GTPase activating protein, putative (100.t00030) partial mRNA Length = 2310 Score = 40.1 bits (20), Expect = 3.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 2 gaaaaagatcaaatatttta 21 |||||||||||||||||||| Sbjct: 1168 gaaaaagatcaaatatttta 1187
>emb|BX546457.1| Human DNA sequence from clone RP11-29O12 on chromosome 1 Contains part of a novel gene (FLJ31487), complete sequence Length = 69971 Score = 40.1 bits (20), Expect = 3.8 Identities = 23/24 (95%) Strand = Plus / Minus Query: 5 aaagatcaaatattttaagatgtc 28 ||||||| |||||||||||||||| Sbjct: 4730 aaagatccaatattttaagatgtc 4707
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete sequence Length = 35954743 Score = 40.1 bits (20), Expect = 3.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 258 cctgcagttcttcctgatct 277 |||||||||||||||||||| Sbjct: 7960065 cctgcagttcttcctgatct 7960046
>dbj|AP005613.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OSJNBa0082C09 Length = 160665 Score = 40.1 bits (20), Expect = 3.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 258 cctgcagttcttcctgatct 277 |||||||||||||||||||| Sbjct: 83480 cctgcagttcttcctgatct 83461
>gb|AC154598.2| Mus musculus BAC clone RP23-356P6 from 14, complete sequence Length = 206646 Score = 40.1 bits (20), Expect = 3.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 3 aaaaagatcaaatattttaa 22 |||||||||||||||||||| Sbjct: 145254 aaaaagatcaaatattttaa 145235
>tpe|BN000557.1| TPA: TPA_inf: Oryza sativa (japonica cultivar-group) prx28 gene for class III peroxidase 28 precursor, exons 1-3 Length = 1203 Score = 40.1 bits (20), Expect = 3.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 258 cctgcagttcttcctgatct 277 |||||||||||||||||||| Sbjct: 1185 cctgcagttcttcctgatct 1166
>gb|AC004486.1|AC004486 Homo sapiens 12q13 PAC RPCI3-432I18 (Roswell Park Cancer Institute Human PAC library) complete sequence Length = 92800 Score = 40.1 bits (20), Expect = 3.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 188 catgacaccaactccactcc 207 |||||||||||||||||||| Sbjct: 58166 catgacaccaactccactcc 58147
>gb|AC114581.8| Mus musculus chromosome 8, clone RP23-170M20, complete sequence Length = 197312 Score = 40.1 bits (20), Expect = 3.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 51 catcattgctaccacatgct 70 |||||||||||||||||||| Sbjct: 21878 catcattgctaccacatgct 21859
>gb|AC119202.6| Mus musculus chromosome 8, clone RP24-185N3, complete sequence Length = 159765 Score = 40.1 bits (20), Expect = 3.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 51 catcattgctaccacatgct 70 |||||||||||||||||||| Sbjct: 127516 catcattgctaccacatgct 127497 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 3,817,463 Number of Sequences: 3902068 Number of extensions: 3817463 Number of successful extensions: 73450 Number of sequences better than 10.0: 77 Number of HSP's better than 10.0 without gapping: 80 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 73075 Number of HSP's gapped (non-prelim): 375 length of query: 294 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 272 effective length of database: 17,147,199,772 effective search space: 4664038337984 effective search space used: 4664038337984 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
