ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbart59f08 |
|---|---|
| Clone Library Name | barley_pub |
>COPE_ARATH (O64748) Probable coatomer subunit epsilon (Epsilon-coat protein)| (Epsilon-COP) Length = 293 Score = 52.8 bits (125), Expect = 2e-07 Identities = 24/31 (77%), Positives = 28/31 (90%) Frame = -3 Query: 377 SQLKLSHPDHVLVKTTTSAEDNFERALQAVA 285 SQLKLSHP+H+LVK +SAEDNFERA+Q VA Sbjct: 263 SQLKLSHPEHILVKRVSSAEDNFERAVQLVA 293
>WBP1_MOUSE (P97764) WW domain-binding protein 1 (WBP-1)| Length = 304 Score = 30.4 bits (67), Expect = 1.1 Identities = 15/43 (34%), Positives = 21/43 (48%), Gaps = 3/43 (6%) Frame = -1 Query: 148 TQNIRCMNGYICRISNRGICCQHPYLVTFCWILWTASI---CC 29 TQ C G+ C + CC + Y + + W+LWT I CC Sbjct: 68 TQPYLCETGHCCGETG---CCTYYYELWWFWLLWTVLILFSCC 107
>DNLI_THEAC (Q9HJ26) DNA ligase (EC 6.5.1.1) (Polydeoxyribonucleotide synthase| [ATP]) Length = 588 Score = 29.3 bits (64), Expect = 2.4 Identities = 16/57 (28%), Positives = 27/57 (47%) Frame = +2 Query: 2 HVHDTWLSLAANTGSPQNPAERNKIWMLTTNATIGDSTYISVHTADVLSTGLADQCV 172 ++HDT + +A TGS A + L N+T + YI+ L G++D + Sbjct: 114 YIHDTLMKMARTTGSGSTKARVDAYMDLFLNSTPKEIMYITRIITGKLRIGISDATI 170
>SECY_PYRSA (P38397) Preprotein translocase secY subunit (Fragment)| Length = 412 Score = 29.3 bits (64), Expect = 2.4 Identities = 13/39 (33%), Positives = 22/39 (56%) Frame = +1 Query: 199 TNTIHSVKALQNGTGEAQRANCNQARMFQATAWSALSKL 315 T +I +++ LQ GEA R +Q ++A W+A+ L Sbjct: 88 TTSIPNLEKLQKEEGEAGRQKISQITRYRALGWAAIQSL 126
>GH32_ARATH (Q9SZT9) Indole-3-acetic acid-amido synthetase GH3.2 (EC 6.3.2.-)| (Auxin-responsive GH3-like protein 2) (AtGH3-2) (YADOKARI 1 protein) Length = 549 Score = 29.3 bits (64), Expect = 2.4 Identities = 22/80 (27%), Positives = 39/80 (48%), Gaps = 7/80 (8%) Frame = +1 Query: 109 FYIYIRSYSGCFEYRVG---RPVCYH--IEQYK--AKTNTIHSVKALQNGTGEAQRANCN 267 + + I +Y+G + YRVG R +H Q+K + N + SV++ + E Q+A N Sbjct: 403 YELVITTYAGLYRYRVGDILRVTGFHNSAPQFKFIRRKNVLLSVESDKTDEAELQKAVEN 462 Query: 268 QARMFQATAWSALSKLSSAD 327 +R+F + S A+ Sbjct: 463 ASRLFAEQGTRGIEYTSYAE 482
>KRA92_HUMAN (Q9BYQ4) Keratin-associated protein 9-2 (Keratin-associated protein| 9.2) (Ultrahigh sulfur keratin-associated protein 9.2) Length = 174 Score = 29.3 bits (64), Expect = 2.4 Identities = 15/45 (33%), Positives = 21/45 (46%) Frame = -1 Query: 160 CQPCTQNIRCMNGYICRISNRGICCQHPYLVTFCWILWTASICCQ 26 CQPC + C N CR + CCQ + + C ++ CCQ Sbjct: 48 CQPCCRPTSCQN-TCCRTT----CCQPTCVTSCCQPSCCSTPCCQ 87 Score = 27.3 bits (59), Expect = 9.2 Identities = 17/51 (33%), Positives = 21/51 (41%) Frame = -1 Query: 178 YGNTLVCQPCTQNIRCMNGYICRISNRGICCQHPYLVTFCWILWTASICCQ 26 Y T VC P N C + C+ R CC+ T C+ S CCQ Sbjct: 121 YYPTTVCLPGCLNQSCGSN-CCQPCCRPACCETTCCRTTCFQPTCVSSCCQ 170
>BUN2_DROME (Q24523) Protein bunched, class 2 isoform (Protein shortsighted)| Length = 1206 Score = 25.4 bits (54), Expect(2) = 3.1 Identities = 18/61 (29%), Positives = 24/61 (39%) Frame = +1 Query: 166 VCYHIEQYKAKTNTIHSVKALQNGTGEAQRANCNQARMFQATAWSALSKLSSADVVVLTS 345 VCY +N S ALQ T E+ R N AT + S++ + TS Sbjct: 171 VCYPPSNIYQNSNNAGSNSALQRTTSESLRLNMMSRVAAGATPTTVSRASSNSSLATSTS 230 Query: 346 T 348 T Sbjct: 231 T 231 Score = 21.9 bits (45), Expect(2) = 3.1 Identities = 9/26 (34%), Positives = 13/26 (50%) Frame = +2 Query: 29 AANTGSPQNPAERNKIWMLTTNATIG 106 ++N G NP RN + + TIG Sbjct: 123 SSNAGPGNNPVRRNSMLTPSRGVTIG 148
>WBP1_HUMAN (Q96G27) WW domain-binding protein 1 (WBP-1)| Length = 269 Score = 28.9 bits (63), Expect = 3.2 Identities = 13/38 (34%), Positives = 20/38 (52%), Gaps = 3/38 (7%) Frame = -1 Query: 133 CMNGYICRISNRGICCQHPYLVTFCWILWTASI---CC 29 C +G+ C + CC + Y + + W+LWT I CC Sbjct: 38 CESGHCCGETG---CCTYYYELWWFWLLWTVLILFSCC 72
>DMDA_DROME (Q9VDW6) Dystrophin, isoforms A/C/DLP1/DLP3| Length = 3497 Score = 28.5 bits (62), Expect = 4.1 Identities = 15/27 (55%), Positives = 18/27 (66%), Gaps = 2/27 (7%) Frame = -3 Query: 368 KLSHPDHVLVKTTTSAED--NFERALQ 294 KL+HP H TTTS ED +F RAL+ Sbjct: 3150 KLTHPMHEYCTTTTSTEDVRDFTRALK 3176
>DMDB_DROME (Q9VDW3) Dystrophin, isoform B| Length = 1669 Score = 28.5 bits (62), Expect = 4.1 Identities = 15/27 (55%), Positives = 18/27 (66%), Gaps = 2/27 (7%) Frame = -3 Query: 368 KLSHPDHVLVKTTTSAED--NFERALQ 294 KL+HP H TTTS ED +F RAL+ Sbjct: 1322 KLTHPMHEYCTTTTSTEDVRDFTRALK 1348
>POLG_WMV2U (P18478) Genome polyprotein [Contains: Nuclear inclusion protein A| (NI-A) (NIA) (EC 3.4.22.44) (49 kDa proteinase) (49 kDa-Pro); Nuclear inclusion protein B (NI-B) (NIB) (RNA-directed RNA polymerase) (EC 2.7.7.48); Coat protein (CP)] (Fragment Length = 1016 Score = 28.1 bits (61), Expect = 5.4 Identities = 10/23 (43%), Positives = 15/23 (65%) Frame = -2 Query: 81 IHILLRSAGFCGLPVFAASESHV 13 IH + GFCGLP+ + ++ HV Sbjct: 117 IHWITTQDGFCGLPLVSVNDGHV 139
>FBN1_PIG (Q9TV36) Fibrillin-1 precursor| Length = 2871 Score = 28.1 bits (61), Expect = 5.4 Identities = 14/28 (50%), Positives = 16/28 (57%) Frame = -1 Query: 142 NIRCMNGYICRISNRGICCQHPYLVTFC 59 NIRCMNG C S+ CQ Y+ T C Sbjct: 120 NIRCMNGGSC--SDDHCLCQKGYIGTHC 145
>FBN1_MOUSE (Q61554) Fibrillin-1 precursor| Length = 2871 Score = 28.1 bits (61), Expect = 5.4 Identities = 14/28 (50%), Positives = 16/28 (57%) Frame = -1 Query: 142 NIRCMNGYICRISNRGICCQHPYLVTFC 59 NIRCMNG C S+ CQ Y+ T C Sbjct: 120 NIRCMNGGSC--SDDHCLCQKGYIGTHC 145
>FBN1_HUMAN (P35555) Fibrillin-1 precursor| Length = 2871 Score = 28.1 bits (61), Expect = 5.4 Identities = 14/28 (50%), Positives = 16/28 (57%) Frame = -1 Query: 142 NIRCMNGYICRISNRGICCQHPYLVTFC 59 NIRCMNG C S+ CQ Y+ T C Sbjct: 120 NIRCMNGGSC--SDDHCLCQKGYIGTHC 145
>FBN1_BOVIN (P98133) Fibrillin-1 precursor (MP340)| Length = 2871 Score = 28.1 bits (61), Expect = 5.4 Identities = 14/28 (50%), Positives = 16/28 (57%) Frame = -1 Query: 142 NIRCMNGYICRISNRGICCQHPYLVTFC 59 NIRCMNG C S+ CQ Y+ T C Sbjct: 120 NIRCMNGGSC--SDDHCLCQKGYIGTHC 145
>POLG_SBMVN (P21231) Genome polyprotein [Contains: P1 proteinase (N-terminal| protein); Helper component proteinase (EC 3.4.22.45) (HC-pro); Protein P3; 6 kDa protein 1 (6K1); Cytoplasmic inclusion protein (EC 3.6.1.-) (CI); 6 kDa protein 2 (6K2); Viral ge Length = 3066 Score = 27.7 bits (60), Expect = 7.0 Identities = 9/23 (39%), Positives = 15/23 (65%) Frame = -2 Query: 81 IHILLRSAGFCGLPVFAASESHV 13 IH + GFCGLP+ + ++ H+ Sbjct: 2182 IHWITTQDGFCGLPLVSVNDGHI 2204
>POLG_SBMVG (Q90069) Genome polyprotein [Contains: P1 proteinase (N-terminal| protein); Helper component proteinase (EC 3.4.22.45) (HC-pro); Protein P3; 6 kDa protein 1 (6K1); Cytoplasmic inclusion protein (EC 3.6.1.-) (CI); 6 kDa protein 2 (6K2); Viral ge Length = 3066 Score = 27.7 bits (60), Expect = 7.0 Identities = 9/23 (39%), Positives = 15/23 (65%) Frame = -2 Query: 81 IHILLRSAGFCGLPVFAASESHV 13 IH + GFCGLP+ + ++ H+ Sbjct: 2182 IHWITTQDGFCGLPLVSVNDGHI 2204
>FUCO_DROME (Q9VTJ4) Putative alpha-L-fucosidase precursor (EC 3.2.1.51)| (Alpha-L-fucoside fucohydrolase) Length = 494 Score = 27.7 bits (60), Expect = 7.0 Identities = 14/25 (56%), Positives = 16/25 (64%) Frame = +1 Query: 271 ARMFQATAWSALSKLSSADVVVLTS 345 A +F AT W+ L K S A VVLTS Sbjct: 109 AELFNATKWALLFKDSGARYVVLTS 133
>CJ092_HUMAN (Q8IYW2) Protein C10orf92| Length = 876 Score = 27.7 bits (60), Expect = 7.0 Identities = 11/25 (44%), Positives = 14/25 (56%) Frame = -1 Query: 337 RPPRRRRITSKGRSKLSPETSLPDC 263 R P++R + KGR P T PDC Sbjct: 544 RDPKKRSLAKKGRKGSIPRTIPPDC 568
>TM16E_MOUSE (Q75UR0) Transmembrane protein 16E (Gnathodiaphyseal dysplasia 1| protein homolog) Length = 904 Score = 27.3 bits (59), Expect = 9.2 Identities = 11/34 (32%), Positives = 21/34 (61%) Frame = -3 Query: 149 YSKHPLYERIYM*NLQSWHLLSASISCYVLLDFV 48 Y P +E Y N+Q WH+L+A ++ ++++ V Sbjct: 800 YRYPPDHEDKYSHNMQFWHVLAAKMTFIIVMEHV 833
>DNLI_THEVO (Q979A1) DNA ligase (EC 6.5.1.1) (Polydeoxyribonucleotide synthase| [ATP]) Length = 588 Score = 27.3 bits (59), Expect = 9.2 Identities = 16/57 (28%), Positives = 26/57 (45%) Frame = +2 Query: 2 HVHDTWLSLAANTGSPQNPAERNKIWMLTTNATIGDSTYISVHTADVLSTGLADQCV 172 +VHDT + +A +GS A + L + T D YI+ L G++D + Sbjct: 114 YVHDTLMRMAKTSGSGSTKARIDAYVDLALSGTPADLMYITRIITGKLRIGVSDATI 170
>ATG7_DEBHA (Q6BGV9) Autophagy-related protein 7 (Autophagy-related| E1-like-activating enzyme ATG7) Length = 652 Score = 27.3 bits (59), Expect = 9.2 Identities = 10/28 (35%), Positives = 16/28 (57%) Frame = -2 Query: 228 KCLNRVNCIGFCFILFYMVTHWSANPVL 145 +C N+V+ + FC + Y +W A P L Sbjct: 130 ECFNKVHVLAFCDLKKYKFYYWFAFPTL 157
>KRA99_HUMAN (Q9BYP9) Keratin-associated protein 9-9 (Keratin-associated protein| 9.9) (Ultrahigh sulfur keratin-associated protein 9.9) Length = 154 Score = 27.3 bits (59), Expect = 9.2 Identities = 17/51 (33%), Positives = 21/51 (41%) Frame = -1 Query: 178 YGNTLVCQPCTQNIRCMNGYICRISNRGICCQHPYLVTFCWILWTASICCQ 26 Y T VC P N C + C+ R CC+ T C+ S CCQ Sbjct: 101 YYPTTVCLPGCLNQSCGSS-CCQPCCRPACCETTCCRTTCFQPTCVSSCCQ 150
>KRA95_HUMAN (Q9BYQ1) Keratin-associated protein 9-5 (Keratin-associated protein| 9.5) (Ultrahigh sulfur keratin-associated protein 9.5) (Fragment) Length = 111 Score = 27.3 bits (59), Expect = 9.2 Identities = 17/51 (33%), Positives = 21/51 (41%) Frame = -1 Query: 178 YGNTLVCQPCTQNIRCMNGYICRISNRGICCQHPYLVTFCWILWTASICCQ 26 Y T VC P N C + C+ R CC+ T C+ S CCQ Sbjct: 58 YYPTTVCLPGCLNQSCGSS-CCQPCCRPACCETTCCRTTCFQPTCVSSCCQ 107 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 58,631,399 Number of Sequences: 219361 Number of extensions: 1165654 Number of successful extensions: 3102 Number of sequences better than 10.0: 24 Number of HSP's better than 10.0 without gapping: 3007 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 3101 length of database: 80,573,946 effective HSP length: 101 effective length of database: 58,418,485 effective search space used: 1402043640 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
