>gb|BT016527.1| Zea mays clone Contig360 mRNA sequence
          Length = 1201

 Score = 58.0 bits (29), Expect = 2e-05
 Identities = 41/45 (91%)
 Strand = Plus / Minus

                                                        
Query: 335 tcttaactagcacgtgatcagggtgcgacagcttcagctggctga 379
           ||||||||||||| || ||||| ||||| ||||||||||||||||
Sbjct: 924 tcttaactagcacatggtcaggatgcgatagcttcagctggctga 880

>gb|AF216853.1|AF216853 Zea mays epsilon-COP mRNA, complete cds
          Length = 1180

 Score = 58.0 bits (29), Expect = 2e-05
 Identities = 41/45 (91%)
 Strand = Plus / Minus

                                                        
Query: 335 tcttaactagcacgtgatcagggtgcgacagcttcagctggctga 379
           ||||||||||||| || ||||| ||||| ||||||||||||||||
Sbjct: 914 tcttaactagcacatggtcaggatgcgatagcttcagctggctga 870

>gb|AY105373.1| Zea mays PCO148993 mRNA sequence
          Length = 1262

 Score = 58.0 bits (29), Expect = 2e-05
 Identities = 41/45 (91%)
 Strand = Plus / Minus

                                                        
Query: 335 tcttaactagcacgtgatcagggtgcgacagcttcagctggctga 379
           ||||||||||||| || ||||| ||||| ||||||||||||||||
Sbjct: 914 tcttaactagcacatggtcaggatgcgatagcttcagctggctga 870

>gb|AE010372.1| Methanopyrus kandleri AV19 section 71 of 157 of the complete genome
          Length = 12580

 Score = 46.1 bits (23), Expect = 0.082
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                   
Query: 311  agttatcctccgccgacgtggtg 333
            |||||||||||||||||||||||
Sbjct: 6188 agttatcctccgccgacgtggtg 6166

>gb|AC113266.24| Papio anubis clone rp41-106a4, complete sequence
          Length = 193032

 Score = 46.1 bits (23), Expect = 0.082
 Identities = 29/31 (93%)
 Strand = Plus / Minus

                                             
Query: 182    aacaatataaagcaaaaaccaatacaattca 212
              ||||||||||||||||||| ||| |||||||
Sbjct: 155467 aacaatataaagcaaaaacgaattcaattca 155437

>gb|AC150687.3| Bos taurus  BAC CH240-243M2 (Children's Hospital Oakland Research
             Institute Bovine BAC Library (male)) complete sequence
          Length = 144223

 Score = 44.1 bits (22), Expect = 0.32
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                   
Query: 182   aacaatataaagcaaaaaccaa 203
             ||||||||||||||||||||||
Sbjct: 58832 aacaatataaagcaaaaaccaa 58853

>ref|XM_635520.1| Dictyostelium discoideum hypothetical protein (DDB0204640), partial
           mRNA
          Length = 2166

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 190 aaagcaaaaaccaatacaat 209
           ||||||||||||||||||||
Sbjct: 583 aaagcaaaaaccaatacaat 602

>ref|XM_473864.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 864

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 35/40 (87%)
 Strand = Plus / Minus

                                                   
Query: 340 actagcacgtgatcagggtgcgacagcttcagctggctga 379
           |||||||| ||||| ||||| || || |||||||||||||
Sbjct: 806 actagcacatgatcggggtgtgatagtttcagctggctga 767

>gb|AC182395.3| Pan troglodytes BAC clone CH251-484N21 from chromosome 2, complete
             sequence
          Length = 176398

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 182   aacaatataaagcaaaaacc 201
             ||||||||||||||||||||
Sbjct: 49378 aacaatataaagcaaaaacc 49359

>gb|AC183832.3| Pan troglodytes BAC clone CH251-260G12 from chromosome 7, complete
            sequence
          Length = 179012

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 180  agaacaatataaagcaaaaa 199
            ||||||||||||||||||||
Sbjct: 8888 agaacaatataaagcaaaaa 8869

>gb|AC182640.3| Pan troglodytes BAC clone CH251-352K16 from chromosome 7, complete
              sequence
          Length = 180187

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 180    agaacaatataaagcaaaaa 199
              ||||||||||||||||||||
Sbjct: 175163 agaacaatataaagcaaaaa 175144

>emb|AL731610.4|OSJN00255 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0070C17,
             complete sequence
          Length = 160484

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 53/64 (82%)
 Strand = Plus / Plus

                                                                         
Query: 53    aatccagcagaacgtaacaagatatggatgctgacaacaaatgccacgattggagattct 112
             ||||||||||||  |||||| || | ||||||||| ||||| | ||| |||  |||||||
Sbjct: 80071 aatccagcagaatataacaaaatgtcgatgctgaccacaaacgtcaccattcaagattct 80130

                 
Query: 113   acat 116
             ||||
Sbjct: 80131 acat 80134

>gb|AC122731.16| Pan troglodytes clone rp43-14d7, complete sequence
          Length = 166903

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 182   aacaatataaagcaaaaacc 201
             ||||||||||||||||||||
Sbjct: 90431 aacaatataaagcaaaaacc 90450

>gb|AC091799.5| Homo sapiens BAC clone RP11-416N13 from 7, complete sequence
          Length = 48680

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 180   agaacaatataaagcaaaaa 199
             ||||||||||||||||||||
Sbjct: 42240 agaacaatataaagcaaaaa 42259

>gb|AC172375.3| Pan troglodytes BAC clone CH251-541M22 from chromosome unknown, complete
              sequence
          Length = 207989

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 198    aaccaatacaattcactctgttaa 221
              ||||||||||||||||| ||||||
Sbjct: 193956 aaccaatacaattcactatgttaa 193933

>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete
                sequence
          Length = 35498469

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 53/64 (82%)
 Strand = Plus / Plus

                                                                            
Query: 53       aatccagcagaacgtaacaagatatggatgctgacaacaaatgccacgattggagattct 112
                ||||||||||||  |||||| || | ||||||||| ||||| | ||| |||  |||||||
Sbjct: 31097990 aatccagcagaatataacaaaatgtcgatgctgaccacaaacgtcaccattcaagattct 31098049

                    
Query: 113      acat 116
                ||||
Sbjct: 31098050 acat 31098053

>gb|AC131180.3| Homo sapiens BAC clone RP11-316I2 from 2, complete sequence
          Length = 132753

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 182   aacaatataaagcaaaaacc 201
             ||||||||||||||||||||
Sbjct: 31836 aacaatataaagcaaaaacc 31817

>gb|AC013269.10| Homo sapiens BAC clone RP11-356I10 from 2, complete sequence
          Length = 165797

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 182    aacaatataaagcaaaaacc 201
              ||||||||||||||||||||
Sbjct: 157979 aacaatataaagcaaaaacc 157960



 Score = 40.1 bits (20), Expect = 5.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 182   aacaatataaagcaaaaacc 201
             ||||||||||||||||||||
Sbjct: 38673 aacaatataaagcaaaaacc 38692

>gb|AC018804.9| Homo sapiens BAC clone RP11-397H17 from 2, complete sequence
          Length = 195514

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 182    aacaatataaagcaaaaacc 201
              ||||||||||||||||||||
Sbjct: 126320 aacaatataaagcaaaaacc 126301

>gb|AC093838.3| Homo sapiens BAC clone RP11-433A19 from 2, complete sequence
          Length = 178029

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 182   aacaatataaagcaaaaacc 201
             ||||||||||||||||||||
Sbjct: 78991 aacaatataaagcaaaaacc 78972

>gb|AC140481.3| Homo sapiens BAC clone RP11-1216L17 from 2, complete sequence
          Length = 219471

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 182    aacaatataaagcaaaaacc 201
              ||||||||||||||||||||
Sbjct: 170611 aacaatataaagcaaaaacc 170630

>gb|AC009404.5| Homo sapiens BAC clone RP11-28H22 from 2, complete sequence
          Length = 112883

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 198  aaccaatacaattcactctgttaa 221
            ||||||||||||||||| ||||||
Sbjct: 6315 aaccaatacaattcactatgttaa 6292

>dbj|AK104427.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-206-A04, full
           insert sequence
          Length = 1207

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 35/40 (87%)
 Strand = Plus / Minus

                                                   
Query: 340 actagcacgtgatcagggtgcgacagcttcagctggctga 379
           |||||||| ||||| ||||| || || |||||||||||||
Sbjct: 938 actagcacatgatcggggtgtgatagtttcagctggctga 899

>dbj|AK099008.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013120E14, full
            insert sequence
          Length = 1218

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 53/64 (82%)
 Strand = Plus / Minus

                                                                        
Query: 53   aatccagcagaacgtaacaagatatggatgctgacaacaaatgccacgattggagattct 112
            ||||||||||||  |||||| || | ||||||||| ||||| | ||| |||  |||||||
Sbjct: 1212 aatccagcagaatataacaaaatgtcgatgctgaccacaaacgtcaccattcaagattct 1153

                
Query: 113  acat 116
            ||||
Sbjct: 1152 acat 1149



 Score = 40.1 bits (20), Expect = 5.1
 Identities = 35/40 (87%)
 Strand = Plus / Minus

                                                   
Query: 340 actagcacgtgatcagggtgcgacagcttcagctggctga 379
           |||||||| ||||| ||||| || || |||||||||||||
Sbjct: 911 actagcacatgatcggggtgtgatagtttcagctggctga 872

>dbj|AK060707.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-030-H03, full
            insert sequence
          Length = 1262

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 53/64 (82%)
 Strand = Plus / Minus

                                                                        
Query: 53   aatccagcagaacgtaacaagatatggatgctgacaacaaatgccacgattggagattct 112
            ||||||||||||  |||||| || | ||||||||| ||||| | ||| |||  |||||||
Sbjct: 1237 aatccagcagaatataacaaaatgtcgatgctgaccacaaacgtcaccattcaagattct 1178

                
Query: 113  acat 116
            ||||
Sbjct: 1177 acat 1174



 Score = 40.1 bits (20), Expect = 5.1
 Identities = 35/40 (87%)
 Strand = Plus / Minus

                                                   
Query: 340 actagcacgtgatcagggtgcgacagcttcagctggctga 379
           |||||||| ||||| ||||| || || |||||||||||||
Sbjct: 936 actagcacatgatcggggtgtgatagtttcagctggctga 897

>dbj|AB042115.1| Oryza sativa (japonica cultivar-group) cope1 mRNA for epsilon1-COP,
           complete cds
          Length = 1207

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 35/40 (87%)
 Strand = Plus / Minus

                                                   
Query: 340 actagcacgtgatcagggtgcgacagcttcagctggctga 379
           |||||||| ||||| ||||| || || |||||||||||||
Sbjct: 928 actagcacatgatcggggtgtgatagtttcagctggctga 889


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,117,505
Number of Sequences: 3902068
Number of extensions: 3117505
Number of successful extensions: 60705
Number of sequences better than 10.0: 26
Number of HSP's better than 10.0 without gapping: 26
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 60648
Number of HSP's gapped (non-prelim): 57
length of query: 379
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 357
effective length of database: 17,147,199,772
effective search space: 6121550318604
effective search space used: 6121550318604
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)