ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbart59f06
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1gb|AC117458.3| Homo sapiens 3 BAC RP11-345M4 (Roswell Park Cance... 46 0.081
2ref|XM_386503.1| Gibberella zeae PH-1 chromosome 3 hypothetical ... 42 1.3
3gb|U39993.1| Caenorhabditis elegans cosmid F47E1, complete sequence 42 1.3
4gb|AC012229.8| Homo sapiens chromosome 15, clone RP11-182L7, com... 42 1.3
5gb|AC103768.2| Homo sapiens chromosome 18, clone RP11-108G18, co... 42 1.3
6gb|AC103774.2| Homo sapiens chromosome 18, clone RP11-177E16, co... 42 1.3
7gb|AC092653.3| Homo sapiens BAC clone RP11-434P11 from 2, comple... 42 1.3
8gb|AC136006.5| Homo sapiens BAC clone RP11-588M17 from 2, comple... 42 1.3
9gb|AC068135.5| Homo sapiens BAC clone RP11-764E7 from 2, complet... 42 1.3
10gb|AC156541.7| Mus musculus chromosome 1, clone RP23-478I8, comp... 42 1.3
11gb|AC008269.4| Homo sapiens BAC clone RP11-95H11 from 2, complet... 42 1.3
12gb|AC101783.12| Mus musculus chromosome 1, clone RP24-136B19, co... 42 1.3
13gb|AC153524.3| Mus musculus 10 BAC RP23-349H12 (Roswell Park Can... 42 1.3
14gb|AC102616.7| Mus musculus chromosome 18, clone RP23-425L21, co... 40 5.0
15gb|AC138355.17| Mus musculus chromosome 8, clone RP24-281G1, com... 40 5.0
16gb|AC168306.7| Mus musculus chromosome 18, clone RP23-225N9, com... 40 5.0
17gb|AY850394.1| Lycopersicon esculentum cultivar Heinz1706 chromo... 40 5.0
18gb|AC118010.11| Mus musculus chromosome 5, clone RP23-451E8, com... 40 5.0
19gb|AC134605.5| Mus musculus BAC clone RP23-42E17 from chromosome... 40 5.0
20ref|XM_737081.1| Plasmodium chabaudi chabaudi hypothetical prote... 40 5.0
21gb|AC151964.12| Medicago truncatula clone mth2-47g17, complete s... 40 5.0
22gb|AC107801.14| Mus musculus, clone RP23-29M6, complete sequence 40 5.0
23emb|AL445201.14| Human DNA sequence from clone RP11-358L16 on ch... 40 5.0
24emb|AL133319.24| Human DNA sequence from clone RP11-394G3 on chr... 40 5.0
25emb|BX572637.17| Zebrafish DNA sequence from clone DKEY-17N16 in... 40 5.0
26emb|BX323012.5| Zebrafish DNA sequence from clone DKEYP-46F3, co... 40 5.0
27gb|AC157490.18| Medicago truncatula clone mth2-123f23, complete ... 40 5.0
28gb|AE011964.1| Xanthomonas axonopodis pv. citri str. 306, secti... 40 5.0
29gb|AC148915.2| Medicago truncatula chromosome 2 BAC clone mth2-1... 40 5.0
30dbj|BA000040.2| Bradyrhizobium japonicum USDA 110 DNA, complete ... 40 5.0
31dbj|AB073162.1| Arabidopsis thaliana DNA, chromosome 4 centromer... 40 5.0
32gb|AC153873.5| Mus musculus 10 BAC RP23-87M12 (Roswell Park Canc... 40 5.0
33gb|AC155334.7| Mus musculus 6 BAC RP24-420O24 (Roswell Park Canc... 40 5.0
34emb|AL161663.4|CNS01RH7 Human chromosome 14 DNA sequence BAC R-7... 40 5.0
35gb|AC114602.16| Mus musculus chromosome 8, clone RP23-339B16, co... 40 5.0
36gb|AC102493.8| Mus musculus chromosome 8, clone RP24-546F2, comp... 40 5.0
37emb|AL844193.6| Zebrafish DNA sequence from clone DKEY-28J3, com... 40 5.0
38emb|AL845298.5| Mouse DNA sequence from clone RP23-280N11 on chr... 40 5.0
39emb|AL845417.3| Mouse DNA sequence from clone RP23-20I9 on chrom... 40 5.0 
>gb|AC117458.3| Homo sapiens 3 BAC RP11-345M4 (Roswell Park Cancer Institute Human BAC
             Library) complete sequence
          Length = 101243

 Score = 46.1 bits (23), Expect = 0.081
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                    
Query: 7     aaaaatatcaaaattaatacaaa 29
             |||||||||||||||||||||||
Sbjct: 40503 aaaaatatcaaaattaatacaaa 40525
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>ref|XM_386503.1| Gibberella zeae PH-1 chromosome 3 hypothetical protein (FG06327.1)
           partial mRNA
          Length = 471

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 265 cttggatcacggcatcttcct 285
           |||||||||||||||||||||
Sbjct: 313 cttggatcacggcatcttcct 293
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>gb|U39993.1| Caenorhabditis elegans cosmid F47E1, complete sequence
          Length = 42799

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 9    aaatatcaaaattaatacaaa 29
            |||||||||||||||||||||
Sbjct: 4807 aaatatcaaaattaatacaaa 4787
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>gb|AC012229.8| Homo sapiens chromosome 15, clone RP11-182L7, complete sequence
          Length = 119723

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 209   cactacacaaaacacaatgat 229
             |||||||||||||||||||||
Sbjct: 56618 cactacacaaaacacaatgat 56638
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>gb|AC103768.2| Homo sapiens chromosome 18, clone RP11-108G18, complete sequence
          Length = 180473

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                      
Query: 17    aaattaatacaaaccacaaacaaag 41
             |||||| ||||||||||||||||||
Sbjct: 44699 aaattattacaaaccacaaacaaag 44675
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>gb|AC103774.2| Homo sapiens chromosome 18, clone RP11-177E16, complete sequence
          Length = 175384

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                      
Query: 17    aaattaatacaaaccacaaacaaag 41
             |||||| ||||||||||||||||||
Sbjct: 44314 aaattattacaaaccacaaacaaag 44290
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>gb|AC092653.3| Homo sapiens BAC clone RP11-434P11 from 2, complete sequence
          Length = 213073

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                      
Query: 15    caaaattaatacaaaccacaaacaa 39
             |||||||||||||||||||| ||||
Sbjct: 73377 caaaattaatacaaaccacacacaa 73353
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>gb|AC136006.5| Homo sapiens BAC clone RP11-588M17 from 2, complete sequence
          Length = 161027

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                     
Query: 15   caaaattaatacaaaccacaaacaa 39
            |||||||||||||||||||| ||||
Sbjct: 2375 caaaattaatacaaaccacacacaa 2351
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>gb|AC068135.5| Homo sapiens BAC clone RP11-764E7 from 2, complete sequence
          Length = 164736

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 103   atcatgaagctatatttttct 123
             |||||||||||||||||||||
Sbjct: 54707 atcatgaagctatatttttct 54687
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>gb|AC156541.7| Mus musculus chromosome 1, clone RP23-478I8, complete sequence
          Length = 173297

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 221    cacaatgatcaaatcaacaaa 241
              |||||||||||||||||||||
Sbjct: 172450 cacaatgatcaaatcaacaaa 172470
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>gb|AC008269.4| Homo sapiens BAC clone RP11-95H11 from 2, complete sequence
          Length = 161935

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 231    aaatcaacaaatcttattttc 251
              |||||||||||||||||||||
Sbjct: 118633 aaatcaacaaatcttattttc 118613
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>gb|AC101783.12| Mus musculus chromosome 1, clone RP24-136B19, complete sequence
          Length = 169909

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 221   cacaatgatcaaatcaacaaa 241
             |||||||||||||||||||||
Sbjct: 46522 cacaatgatcaaatcaacaaa 46502
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>gb|AC153524.3| Mus musculus 10 BAC RP23-349H12 (Roswell Park Cancer Institute
             (C57BL/6J Female) Mouse BAC Library) complete sequence
          Length = 167574

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 113   tatatttttctgtccatccct 133
             |||||||||||||||||||||
Sbjct: 39903 tatatttttctgtccatccct 39883
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>gb|AC102616.7| Mus musculus chromosome 18, clone RP23-425L21, complete sequence
          Length = 192276

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                          
Query: 205    atcacactacacaaaacacaatgatcaa 232
              ||||| ||||||||||||||| ||||||
Sbjct: 126209 atcactctacacaaaacacaaggatcaa 126182
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>gb|AC138355.17| Mus musculus chromosome 8, clone RP24-281G1, complete sequence
          Length = 154808

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 17     aaattaatacaaaccacaaa 36
              ||||||||||||||||||||
Sbjct: 136255 aaattaatacaaaccacaaa 136236
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>gb|AC168306.7| Mus musculus chromosome 18, clone RP23-225N9, complete sequence
          Length = 198815

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                          
Query: 205    atcacactacacaaaacacaatgatcaa 232
              ||||| ||||||||||||||| ||||||
Sbjct: 138930 atcactctacacaaaacacaaggatcaa 138957
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>gb|AY850394.1| Lycopersicon esculentum cultivar Heinz1706 chromosome 12 centromeric
              region
          Length = 326112

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 2      tgccaaaaaatatcaaaatt 21
              ||||||||||||||||||||
Sbjct: 300645 tgccaaaaaatatcaaaatt 300626
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>gb|AC118010.11| Mus musculus chromosome 5, clone RP23-451E8, complete sequence
          Length = 184672

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 72     tatcttttctctatttcatt 91
              ||||||||||||||||||||
Sbjct: 136604 tatcttttctctatttcatt 136623
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>gb|AC134605.5| Mus musculus BAC clone RP23-42E17 from chromosome 14, complete sequence
          Length = 216097

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 74    tcttttctctatttcattag 93
             ||||||||||||||||||||
Sbjct: 75677 tcttttctctatttcattag 75658
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>ref|XM_737081.1| Plasmodium chabaudi chabaudi hypothetical protein (PC000245.03.0)
           partial mRNA
          Length = 2262

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 12  tatcaaaattaatacaaacc 31
           ||||||||||||||||||||
Sbjct: 284 tatcaaaattaatacaaacc 303
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>gb|AC151964.12| Medicago truncatula clone mth2-47g17, complete sequence
          Length = 117929

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 5     caaaaaatatcaaaattaatacaa 28
             |||||||||| |||||||||||||
Sbjct: 91355 caaaaaatattaaaattaatacaa 91378
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>gb|AC107801.14| Mus musculus, clone RP23-29M6, complete sequence
          Length = 283075

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 232    aatcaacaaatcttattttc 251
              ||||||||||||||||||||
Sbjct: 261706 aatcaacaaatcttattttc 261725
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>emb|AL445201.14| Human DNA sequence from clone RP11-358L16 on chromosome 10 Contains a
             AFR GTPase-activating protein (MRIP2) pseudogene, a novel
             gene, gene LOC93550, the 3' end of a KIAA0592 pseudogene
             and three CpG islands, complete sequence
          Length = 179193

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 71    ttatcttttctctatttcat 90
             ||||||||||||||||||||
Sbjct: 18941 ttatcttttctctatttcat 18922
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>emb|AL133319.24| Human DNA sequence from clone RP11-394G3 on chromosome 6 Contains the
             5' end of the PDE7B gene for phosphodiesterase 7B and a
             novel gene, complete sequence
          Length = 150072

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 5     caaaaaatatcaaaattaat 24
             ||||||||||||||||||||
Sbjct: 81148 caaaaaatatcaaaattaat 81167
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>emb|BX572637.17| Zebrafish DNA sequence from clone DKEY-17N16 in linkage group 11,
              complete sequence
          Length = 158265

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 10     aatatcaaaattaatacaaa 29
              ||||||||||||||||||||
Sbjct: 124330 aatatcaaaattaatacaaa 124311
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>emb|BX323012.5| Zebrafish DNA sequence from clone DKEYP-46F3, complete sequence
          Length = 175238

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 141    cgagcttaaacaaacatatt 160
              ||||||||||||||||||||
Sbjct: 113841 cgagcttaaacaaacatatt 113860
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>gb|AC157490.18| Medicago truncatula clone mth2-123f23, complete sequence
          Length = 106571

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 5     caaaaaatatcaaaattaat 24
             ||||||||||||||||||||
Sbjct: 54194 caaaaaatatcaaaattaat 54213
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>gb|AE011964.1| Xanthomonas axonopodis pv. citri str. 306,  section 342 of 469 of the
            complete genome
          Length = 10942

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 353  ccttgccggcgtcagcgact 372
            ||||||||||||||||||||
Sbjct: 8316 ccttgccggcgtcagcgact 8297
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>gb|AC148915.2| Medicago truncatula chromosome 2 BAC clone mth2-12i20, complete
             sequence
          Length = 96388

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 5     caaaaaatatcaaaattaatacaa 28
             |||||||||| |||||||||||||
Sbjct: 89812 caaaaaatattaaaattaatacaa 89789
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>dbj|BA000040.2| Bradyrhizobium japonicum USDA 110 DNA, complete genome
          Length = 9105828

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                       
Query: 334     gccttcatctcctggaaaaccttg 357
               |||||||||||||||||| |||||
Sbjct: 1146722 gccttcatctcctggaaatccttg 1146699
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>dbj|AB073162.1| Arabidopsis thaliana DNA, chromosome 4 centromere region, BAC
             clone:F8H12
          Length = 92597

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 3     gccaaaaaatatcaaaattaatac 26
             ||||||||||||||||| ||||||
Sbjct: 10231 gccaaaaaatatcaaaagtaatac 10208
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>gb|AC153873.5| Mus musculus 10 BAC RP23-87M12 (Roswell Park Cancer Institute (C57BL/6J
             Female) Mouse BAC Library) complete sequence
          Length = 207864

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 192   attgtaatcagtgatcacac 211
             ||||||||||||||||||||
Sbjct: 20753 attgtaatcagtgatcacac 20734
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>gb|AC155334.7| Mus musculus 6 BAC RP24-420O24 (Roswell Park Cancer Institute (C57BL/6J
              Male) Mouse BAC Library) complete sequence
          Length = 153509

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 192    attgtaatcagtgatcacac 211
              ||||||||||||||||||||
Sbjct: 144360 attgtaatcagtgatcacac 144341
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>emb|AL161663.4|CNS01RH7 Human chromosome 14 DNA sequence BAC R-725L2 of library RPCI-11 from
             chromosome 14 of Homo sapiens (Human), complete sequence
          Length = 170780

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 6     aaaaaatatcaaaattaata 25
             ||||||||||||||||||||
Sbjct: 73461 aaaaaatatcaaaattaata 73480
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>gb|AC114602.16| Mus musculus chromosome 8, clone RP23-339B16, complete sequence
          Length = 196024

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 17     aaattaatacaaaccacaaa 36
              ||||||||||||||||||||
Sbjct: 179487 aaattaatacaaaccacaaa 179506
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>gb|AC102493.8| Mus musculus chromosome 8, clone RP24-546F2, complete sequence
          Length = 175883

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 217   aaaacacaatgatcaaatcaacaa 240
             |||||||||||||||| |||||||
Sbjct: 43963 aaaacacaatgatcaactcaacaa 43986
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>emb|AL844193.6| Zebrafish DNA sequence from clone DKEY-28J3, complete sequence
          Length = 210900

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 10    aatatcaaaattaatacaaa 29
             ||||||||||||||||||||
Sbjct: 96916 aatatcaaaattaatacaaa 96897
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>emb|AL845298.5| Mouse DNA sequence from clone RP23-280N11 on chromosome 2, complete
              sequence
          Length = 213826

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 22     aatacaaaccacaaacaaag 41
              ||||||||||||||||||||
Sbjct: 152569 aatacaaaccacaaacaaag 152550
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>emb|AL845417.3| Mouse DNA sequence from clone RP23-20I9 on chromosome 2, complete
             sequence
          Length = 144844

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 232   aatcaacaaatcttattttc 251
             ||||||||||||||||||||
Sbjct: 10556 aatcaacaaatcttattttc 10537


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 4,181,200
Number of Sequences: 3902068
Number of extensions: 4181200
Number of successful extensions: 110556
Number of sequences better than 10.0: 39
Number of HSP's better than 10.0 without gapping: 39
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 110435
Number of HSP's gapped (non-prelim): 121
length of query: 373
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 351
effective length of database: 17,147,199,772
effective search space: 6018667119972
effective search space used: 6018667119972
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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