ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbart59f05 |
|---|---|
| Clone Library Name | barley_pub |
>emb|X84056.1|HVPAF93 H.vulgare paf93 gene Length = 1154 Score = 513 bits (259), Expect = e-143 Identities = 271/275 (98%) Strand = Plus / Minus Query: 1 aaaccaatacacaaagggcccgtaataataagcaaataaacttaaacaacatccaggacc 60 |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1115 aaaccaatacacaaagtgcccgtaataataagcaaataaacttaaacaacatccaggacc 1056 Query: 61 tgactctggaccaaactgaagcccgtatacccaaactgaacacaagcatccgtcacctaa 120 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1055 tgactctggaccaaactgaagcccgtatacccaaactgaacacaagcatccgtcacctaa 996 Query: 121 cgggcttcacagaccggaccttcaaagacgatcaatccctccatcttgacacggacttaa 180 ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 995 cggacttcacagaccggaccttcaaagacgatcaatccctccatcttgacacggacttag 936 Query: 181 acttaaagcaaacacgacacacgccaacaatttaatggaggtccggtgatgagtctcggg 240 || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 935 acgtaaagcaaacacgacacacgccaacaatttaatggaggtccggtgatgagtctcggg 876 Query: 241 gcacggcggcgatcaagctctgggcttgtgctcgc 275 ||||||||||||||||||||||||||||||||||| Sbjct: 875 gcacggcggcgatcaagctctgggcttgtgctcgc 841
>gb|AF043093.1|AF043093 Hordeum vulgare dehydrin 8 (dhn8) gene, complete cds Length = 2254 Score = 250 bits (126), Expect = 2e-63 Identities = 126/126 (100%) Strand = Plus / Minus Query: 150 gatcaatccctccatcttgacacggacttaaacttaaagcaaacacgacacacgccaaca 209 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2246 gatcaatccctccatcttgacacggacttaaacttaaagcaaacacgacacacgccaaca 2187 Query: 210 atttaatggaggtccggtgatgagtctcggggcacggcggcgatcaagctctgggcttgt 269 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2186 atttaatggaggtccggtgatgagtctcggggcacggcggcgatcaagctctgggcttgt 2127 Query: 270 gctcgc 275 |||||| Sbjct: 2126 gctcgc 2121
>gb|U73211.1|TAU73211 Triticum aestivum cold acclimation protein WCOR410c (Wcor410c) mRNA, complete cds Length = 1242 Score = 188 bits (95), Expect = 6e-45 Identities = 168/187 (89%), Gaps = 4/187 (2%) Strand = Plus / Minus Query: 91 ccaaactgaa-cacaagcatccgtcacctaacgggcttcacagaccggaccttcaaagac 149 |||||||||| |||||||||||||||| |||||||||||| ||||| |||||||||||| Sbjct: 1037 ccaaactgaaacacaagcatccgtcactgaacgggcttcacggaccgaaccttcaaagac 978 Query: 150 gatcaatccct-ccatcttgacacggacttaaacttaaagcaaacacgacacacgccaac 208 |||||| |||| ||| |||||||| |||| ||| |||||||||||| |||||||||||| Sbjct: 977 gatcaacccctcccaccttgacaccaactt-aacgtaaagcaaacacaacacacgccaac 919 Query: 209 aatttaatggaggtccggtgatgagtctcggggcacggcggcgatcaagctctgggcttg 268 |||| ||| |||||||||| | ||||||| |||||||||||||||||||| ||||||||| Sbjct: 918 aattcaatcgaggtccggtcacgagtctc-gggcacggcggcgatcaagcgctgggcttg 860 Query: 269 tgctcgc 275 ||||||| Sbjct: 859 tgctcgc 853 Score = 71.9 bits (36), Expect = 1e-09 Identities = 52/56 (92%), Gaps = 1/56 (1%) Strand = Plus / Minus Query: 25 ataataagcaaataaacttaaacaacatccaggacctgactctggaccaaactgaa 80 |||||||| ||| |||||||| |||||||||||||||||||||| ||||||||||| Sbjct: 1082 ataataagtaaacaaacttaa-caacatccaggacctgactctgaaccaaactgaa 1028
>gb|L29152.1|WHTWCOR Triticum aestivum cold acclimation protein (WCOR410) mRNA, complete cds Length = 1136 Score = 180 bits (91), Expect = 2e-42 Identities = 166/187 (88%), Gaps = 3/187 (1%) Strand = Plus / Minus Query: 91 ccaaactgaa-cacaagcatccgtcacctaacgggcttcacagaccggaccttcaaagac 149 |||||||||| || ||||| ||||||| |||||||||||| |||||||||||||||||| Sbjct: 1038 ccaaactgaaacagaagcacccgtcactgaacgggcttcacggaccggaccttcaaagac 979 Query: 150 gatcaatccct-ccatcttgacacggacttaaacttaaagcaaacacgacacacgccaac 208 |||||| |||| ||| |||||||| ||||| || |||||||||||| |||||||||||| Sbjct: 978 gatcaacccctcccaccttgacaccaacttagacgtaaagcaaacacaacacacgccaac 919 Query: 209 aatttaatggaggtccggtgatgagtctcggggcacggcggcgatcaagctctgggcttg 268 |||| ||| |||||||||| | | ||||| |||||||||||||||||||| ||||||||| Sbjct: 918 aattcaatcgaggtccggtcacgggtctc-gggcacggcggcgatcaagcgctgggcttg 860 Query: 269 tgctcgc 275 ||||||| Sbjct: 859 tgctcgc 853 Score = 61.9 bits (31), Expect = 1e-06 Identities = 34/35 (97%) Strand = Plus / Minus Query: 46 acaacatccaggacctgactctggaccaaactgaa 80 ||||||||||||||||||||||| ||||||||||| Sbjct: 1063 acaacatccaggacctgactctgaaccaaactgaa 1029
>gb|U73210.1|TAU73210 Triticum aestivum cold acclimation protein WCOR410b (Wcor410b) mRNA, complete cds Length = 1181 Score = 178 bits (90), Expect = 6e-42 Identities = 158/178 (88%), Gaps = 2/178 (1%) Strand = Plus / Minus Query: 99 aacacaagcatccgtcacctaacgggcttcacagaccggaccttcaaagacgatcaatcc 158 |||| ||||| ||||||| |||||||||||| |||||||||||||||||||||||| || Sbjct: 1038 aacagaagcacccgtcactcaacgggcttcacggaccggaccttcaaagacgatcaaccc 979 Query: 159 ct-ccatcttgacacggacttaaacttaaagcaaacacgacacacgccaacaatttaatg 217 || ||| |||||||| ||||| || |||||||||||| |||||||||||||||| ||| Sbjct: 978 ctcccaccttgacaccaacttagacgtaaagcaaacacaacacacgccaacaattcaatc 919 Query: 218 gaggtccggtgatgagtctcggggcacggcggcgatcaagctctgggcttgtgctcgc 275 |||||||||| | | ||||| |||||||||||||||||||| |||||||||||||||| Sbjct: 918 gaggtccggtcacgggtctc-gggcacggcggcgatcaagcgctgggcttgtgctcgc 862
>gb|L19419.1|LHPESI Lophopyrum elongatum ES135 mRNA sequence Length = 1130 Score = 172 bits (87), Expect = 4e-40 Identities = 166/187 (88%), Gaps = 4/187 (2%) Strand = Plus / Minus Query: 91 ccaaactgaa-cacaagcatccgtcacctaacgggcttcacagaccggaccttcaaagac 149 |||||||||| ||||| |||||||||| ||||||||||||||||||||||||||| ||| Sbjct: 1009 ccaaactgaaacacaaacatccgtcactgaacgggcttcacagaccggaccttcaa-gac 951 Query: 150 gatcaatccctcc-atcttgacacggacttaaacttaaagcaaacacgacacacgccaac 208 |||||| |||||| | |||||||| ||||| || |||||||||||| |||||||||||| Sbjct: 950 gatcaacccctcccaccttgacaccaacttagacgtaaagcaaacacaacacacgccaac 891 Query: 209 aatttaatggaggtccggtgatgagtctcggggcacggcggcgatcaagctctgggcttg 268 |||| ||| ||| |||||| | ||||||| ||||||||||||||| |||| ||||||||| Sbjct: 890 aattcaatcgagctccggtcacgagtctc-gggcacggcggcgattaagcgctgggcttg 832 Query: 269 tgctcgc 275 ||||||| Sbjct: 831 tgctcgc 825 Score = 65.9 bits (33), Expect = 6e-08 Identities = 49/53 (92%), Gaps = 1/53 (1%) Strand = Plus / Minus Query: 28 ataagcaaataaacttaaacaacatccaggacctgactctggaccaaactgaa 80 ||||| ||| |||||||| |||||||||||||||||||||| ||||||||||| Sbjct: 1051 ataagtaaacaaacttaa-caacatccaggacctgactctgaaccaaactgaa 1000
>emb|AJ890140.1| Triticum turgidum subsp. durum mRNA for dehydrin (dhn11 gene) Length = 1127 Score = 157 bits (79), Expect = 2e-35 Identities = 164/187 (87%), Gaps = 4/187 (2%) Strand = Plus / Minus Query: 91 ccaaactgaa-cacaagcatccgtcacctaacgggcttcacagaccggaccttcaaagac 149 |||||||||| |||||||||||||||| |||||||||||| ||||| |||||||||||| Sbjct: 1035 ccaaactgaaacacaagcatccgtcactgaacgggcttcacggaccgaaccttcaaagac 976 Query: 150 gatcaatccct-ccatcttgacacggacttaaacttaaagcaaacacgacacacgccaac 208 |||||| |||| ||| |||||||| |||| ||| |||||||||||| |||||||||||| Sbjct: 975 gatcaacccctcccaccttgacaccaactt-aacgtaaagcaaacacaacacacgccaac 917 Query: 209 aatttaatggaggtccggtgatgagtctcggggcacggcggcgatcaagctctgggcttg 268 |||| ||| | |||||||| | ||||||| ||||||||||||| |||||| |||| ||| Sbjct: 916 aattcaatcggggtccggtcacgagtctc-gggcacggcggcgttcaagcgttgggattg 858 Query: 269 tgctcgc 275 ||||||| Sbjct: 857 tgctcgc 851 Score = 71.9 bits (36), Expect = 1e-09 Identities = 52/56 (92%), Gaps = 1/56 (1%) Strand = Plus / Minus Query: 25 ataataagcaaataaacttaaacaacatccaggacctgactctggaccaaactgaa 80 |||||||| ||| |||||||| |||||||||||||||||||||| ||||||||||| Sbjct: 1080 ataataagtaaacaaacttaa-caacatccaggacctgactctgaaccaaactgaa 1026
>gb|AF181458.1|AF181458 Hordeum vulgare dehydrin (Dhn8) mRNA, complete cds Length = 808 Score = 121 bits (61), Expect = 1e-24 Identities = 61/61 (100%) Strand = Plus / Minus Query: 215 atggaggtccggtgatgagtctcggggcacggcggcgatcaagctctgggcttgtgctcg 274 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 808 atggaggtccggtgatgagtctcggggcacggcggcgatcaagctctgggcttgtgctcg 749 Query: 275 c 275 | Sbjct: 748 c 748
>emb|AL808127.4| Mouse DNA sequence from clone RP23-263L18 on chromosome 2, complete sequence Length = 205838 Score = 48.1 bits (24), Expect = 0.015 Identities = 24/24 (100%) Strand = Plus / Plus Query: 60 ctgactctggaccaaactgaagcc 83 |||||||||||||||||||||||| Sbjct: 138293 ctgactctggaccaaactgaagcc 138316
>gb|AC102686.7| Mus musculus chromosome 1, clone RP24-467J24, complete sequence Length = 156547 Score = 42.1 bits (21), Expect = 0.91 Identities = 21/21 (100%) Strand = Plus / Plus Query: 89 acccaaactgaacacaagcat 109 ||||||||||||||||||||| Sbjct: 134241 acccaaactgaacacaagcat 134261
>gb|AC164098.4| Mus musculus BAC clone RP23-341D24 from chromosome 1, complete sequence Length = 221754 Score = 40.1 bits (20), Expect = 3.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 27 aataagcaaataaacttaaa 46 |||||||||||||||||||| Sbjct: 153660 aataagcaaataaacttaaa 153679
>ref|XM_760938.1| Theileria parva strain Muguga chromosome 1 hypothetical protein (TP01_0511) partial mRNA Length = 5448 Score = 40.1 bits (20), Expect = 3.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 34 aaataaacttaaacaacatc 53 |||||||||||||||||||| Sbjct: 4865 aaataaacttaaacaacatc 4884
>gb|AC144479.1| Pan troglodytes BAC clone RP43-126P12 from 7, complete sequence Length = 211515 Score = 40.1 bits (20), Expect = 3.6 Identities = 26/28 (92%) Strand = Plus / Plus Query: 22 gtaataataagcaaataaacttaaacaa 49 |||||||||||||||| || |||||||| Sbjct: 140814 gtaataataagcaaattaaattaaacaa 140841
>emb|CR339044.19| Zebrafish DNA sequence from clone CH211-122G23 in linkage group 5, complete sequence Length = 177385 Score = 40.1 bits (20), Expect = 3.6 Identities = 23/24 (95%) Strand = Plus / Minus Query: 23 taataataagcaaataaacttaaa 46 |||||||||| ||||||||||||| Sbjct: 63646 taataataagtaaataaacttaaa 63623
>emb|BX927212.11| Zebrafish DNA sequence from clone CH211-262A5 in linkage group 5, complete sequence Length = 157791 Score = 40.1 bits (20), Expect = 3.6 Identities = 23/24 (95%) Strand = Plus / Minus Query: 23 taataataagcaaataaacttaaa 46 |||||||||| ||||||||||||| Sbjct: 81135 taataataagtaaataaacttaaa 81112
>dbj|BS000095.1| Pan troglodytes chromosome 22 clone:RP43-177D07, map 22, complete sequences Length = 181678 Score = 40.1 bits (20), Expect = 3.6 Identities = 26/28 (92%) Strand = Plus / Minus Query: 54 caggacctgactctggaccaaactgaag 81 |||||| ||||||||||||| ||||||| Sbjct: 3276 caggacttgactctggaccagactgaag 3249
>dbj|BS000094.1| Pan troglodytes chromosome 22 clone:PTB-240N13, map 22, complete sequences Length = 155513 Score = 40.1 bits (20), Expect = 3.6 Identities = 26/28 (92%) Strand = Plus / Minus Query: 54 caggacctgactctggaccaaactgaag 81 |||||| ||||||||||||| ||||||| Sbjct: 131204 caggacttgactctggaccagactgaag 131177
>gb|AC140483.3| Mus musculus BAC clone RP24-145A22 from 1, complete sequence Length = 176649 Score = 40.1 bits (20), Expect = 3.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 27 aataagcaaataaacttaaa 46 |||||||||||||||||||| Sbjct: 121495 aataagcaaataaacttaaa 121476
>dbj|AP001690.1| Homo sapiens genomic DNA, chromosome 21q, section 34/105 Length = 340000 Score = 40.1 bits (20), Expect = 3.6 Identities = 26/28 (92%) Strand = Plus / Minus Query: 54 caggacctgactctggaccaaactgaag 81 |||||| ||||||||||||| ||||||| Sbjct: 80688 caggacttgactctggaccagactgaag 80661
>dbj|AP000469.3| Homo sapiens genomic DNA, chromosome 21q, clone:RP11-132H24, complete sequence Length = 136804 Score = 40.1 bits (20), Expect = 3.6 Identities = 26/28 (92%) Strand = Plus / Minus Query: 54 caggacctgactctggaccaaactgaag 81 |||||| ||||||||||||| ||||||| Sbjct: 102805 caggacttgactctggaccagactgaag 102778 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 2,172,030 Number of Sequences: 3902068 Number of extensions: 2172030 Number of successful extensions: 40802 Number of sequences better than 10.0: 20 Number of HSP's better than 10.0 without gapping: 20 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 40756 Number of HSP's gapped (non-prelim): 35 length of query: 275 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 253 effective length of database: 17,147,199,772 effective search space: 4338241542316 effective search space used: 4338241542316 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
