ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
Japanese | English
更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbart59f02
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1gb|AY037163.1| Homo sapiens ribosomal protein L15 mRNA, complete... 226 3e-56
2dbj|AB181483.1| Bromus inermis BiRP2 mRNA for ribosomal protein,... 194 1e-46
3gb|BT016488.1| Zea mays clone Contig321 mRNA sequence 131 1e-27
4gb|BT016564.1| Zea mays clone Contig397 mRNA sequence 103 3e-19
5gb|AY109334.1| Zea mays CL3259_2 mRNA sequence 103 3e-19
6ref|NM_184952.1| Oryza sativa (japonica cultivar-group), mRNA 88 2e-14
7gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 88 2e-14
8dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic D... 88 2e-14
9gb|AC109602.6| Oryza sativa chromosome 3 BAC OSJNBa0087M10 genom... 88 2e-14
10gb|AC090874.9| Oryza sativa chromosome 3 BAC OJ1523_A02 genomic ... 88 2e-14
11dbj|AK121762.1| Oryza sativa (japonica cultivar-group) cDNA clon... 88 2e-14
12dbj|AK104774.1| Oryza sativa (japonica cultivar-group) cDNA clon... 88 2e-14
13dbj|AK066806.1| Oryza sativa (japonica cultivar-group) cDNA clon... 88 2e-14
14dbj|AK060928.1| Oryza sativa (japonica cultivar-group) cDNA clon... 88 2e-14
15gb|AC137610.2| Oryza sativa (japonica cultivar-group) chromosome... 60 4e-06
16dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic D... 60 4e-06
17dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic D... 44 0.25
18dbj|AP006054.3| Oryza sativa (japonica cultivar-group) genomic D... 44 0.25
19dbj|AP005852.2| Oryza sativa (japonica cultivar-group) genomic D... 44 0.25
20gb|DQ284461.1| Solanum tuberosum clone 071F06 60S ribosomal prot... 44 0.25
21ref|NM_117842.2| Arabidopsis thaliana MSH4 (MUTS-LIKE PROTEIN 4)... 42 0.99
22ref|NM_117843.2| Arabidopsis thaliana structural constituent of ... 42 0.99
23emb|Z97343.1|ATFCA8 Arabidopsis thaliana DNA chromosome 4, ESSA ... 42 0.99
24gb|AY122965.1| Arabidopsis thaliana putative 60S ribosomal prote... 42 0.99
25gb|AY072118.1| Arabidopsis thaliana putative 60S ribosomal prote... 42 0.99
26emb|AL161546.2|ATCHRIV46 Arabidopsis thaliana DNA chromosome 4, ... 42 0.99
27gb|AC091202.3| Drosophila melanogaster 3L BAC RP98-30A3 (Roswell... 42 0.99
28gb|AC157544.7| Mus musculus chromosome 8, clone RP23-271P20, com... 42 0.99
29emb|BX827071.1|CNS0A47Q Arabidopsis thaliana Full-length cDNA Co... 42 0.99
30emb|BX828288.1|CNS0A3VG Arabidopsis thaliana Full-length cDNA Co... 42 0.99
31gb|AC114783.5| Homo sapiens BAC clone RP11-600N14 from 2, comple... 42 0.99
32gb|AY087088.1| Arabidopsis thaliana clone 31538 mRNA, complete s... 42 0.99
33gb|AC097449.3| Homo sapiens BAC clone CTD-2140E23 from 2, comple... 42 0.99
34emb|BX005128.4| Zebrafish DNA sequence from clone CH211-129H14 i... 42 0.99
35gb|AE003563.4| Drosophila melanogaster chromosome 3L, section 22... 42 0.99
36gb|AC004349.1|AC004349 Drosophila melanogaster DNA sequence (P1 ... 42 0.99
37ref|XM_633045.1| Dictyostelium discoideum hypothetical protein (... 40 3.9
38gb|BT013339.1| Lycopersicon esculentum clone 135132F, mRNA sequence 40 3.9
39gb|AC146163.3| Pan troglodytes BAC clone RP43-24D16 from 7, comp... 40 3.9
40gb|AC004745.2| Homo sapiens BAC clone CTA-281B9 from 7, complete... 40 3.9
41emb|AL391358.14| Human DNA sequence from clone RP11-197B12 on ch... 40 3.9
42gb|AC117661.20| Mus musculus chromosome 6, clone RP23-343P1, com... 40 3.9
43emb|BX901883.5| Zebrafish DNA sequence from clone DKEY-151M15 in... 40 3.9
44gb|AE010202.1| Pyrococcus furiosus DSM 3638, section 77 of 173 o... 40 3.9
45gb|AC102373.13| Mus musculus chromosome 3, clone RP23-263O17, co... 40 3.9
46gb|AF154663.1| Nicotiana tabacum clone PR55 mRNA sequence 40 3.9
47gb|AC122362.5| Mus musculus BAC clone RP23-430N1 from chromosome... 40 3.9
48gb|AC174449.2| Mus musculus BAC clone RP23-338O19 from chromosom... 40 3.9
49dbj|AP001360.5| Homo sapiens genomic DNA, chromosome 11 clone:RP... 40 3.9
50emb|AL732475.6| Mouse DNA sequence from clone RP23-202H24 on chr... 40 3.9
51gb|M17145.1|RCCICL4 Castor bean (R.communis) isocitrate lyase mR... 40 3.9 
>gb|AY037163.1| Homo sapiens ribosomal protein L15 mRNA, complete cds
          Length = 821

 Score =  226 bits (114), Expect = 3e-56
 Identities = 157/170 (92%), Gaps = 1/170 (0%)
 Strand = Plus / Minus

                                                                       
Query: 131 agcataggacaggttccacataacacaacagcaca-aagcttaacggtagcggcgaaggg 189
           ||||||||||||||||||||  ||| |||| |||  ||||||||||||||||||| ||||
Sbjct: 690 agcataggacaggttccacaggacataacaccacgtaagcttaacggtagcggcggaggg 631

                                                                       
Query: 190 agacagtctggttcctcttccaagtggctctccttgagggcctgttcttgtggtggcggt 249
           |||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 630 agacggtctggttcctcttccaggtggctctccttgagggcctgttcttgtggtggcggt 571

                                                             
Query: 250 gacccttgccacgcagaccacggaacttctttccagctgaagtgagacca 299
           ||||||||||||||||||||||||| |||||||| || || |||||||||
Sbjct: 570 gacccttgccacgcagaccacggaatttctttcctgcagaggtgagacca 521



 Score = 46.1 bits (23), Expect = 0.064
 Identities = 50/59 (84%)
 Strand = Plus / Minus

                                                                      
Query: 13  atcattcagttttcaggtaatacagacatatagcaaatagtttaacagacatgcctgga 71
           ||||||||  |||||  ||| |||| || ||||||||||||| ||||| ||||||||||
Sbjct: 796 atcattcaaatttcacataacacaggcacatagcaaatagttcaacaggcatgcctgga 738
to top
>dbj|AB181483.1| Bromus inermis BiRP2 mRNA for ribosomal protein, complete cds
          Length = 878

 Score =  194 bits (98), Expect = 1e-46
 Identities = 125/134 (93%)
 Strand = Plus / Minus

                                                                       
Query: 166 aagcttaacggtagcggcgaagggagacagtctggttcctcttccaagtggctctccttg 225
           |||||||||||||||| || |||||||| |||||||| | |||||| ||||||||||| |
Sbjct: 672 aagcttaacggtagcgacggagggagacggtctggttgcgcttccatgtggctctcctcg 613

                                                                       
Query: 226 agggcctgttcttgtggtggcggtgacccttgccacgcagaccacggaacttctttccag 285
           |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 612 agggcctgttcttgtggtggcggtgacccttgccgcgcagaccacggaacttctttccag 553

                         
Query: 286 ctgaagtgagacca 299
           |||| |||||||||
Sbjct: 552 ctgaggtgagacca 539
to top
>gb|BT016488.1| Zea mays clone Contig321 mRNA sequence
          Length = 924

 Score =  131 bits (66), Expect = 1e-27
 Identities = 108/122 (88%)
 Strand = Plus / Minus

                                                                       
Query: 174 cggtagcggcgaagggagacagtctggttcctcttccaagtggctctccttgagggcctg 233
           ||||||||||| |||||||  |||||||| | |||||| |||||||||||||||||||||
Sbjct: 673 cggtagcggcggagggagagggtctggttgcgcttccaggtggctctccttgagggcctg 614

                                                                       
Query: 234 ttcttgtggtggcggtgacccttgccacgcagaccacggaacttctttccagctgaagtg 293
           ||||||||||||  ||| |||||||||||||| |||||| ||||||| || ||||| |||
Sbjct: 613 ttcttgtggtgggtgtggcccttgccacgcaggccacggtacttcttgcctgctgaggtg 554

             
Query: 294 ag 295
           ||
Sbjct: 553 ag 552
to top
>gb|BT016564.1| Zea mays clone Contig397 mRNA sequence
          Length = 807

 Score =  103 bits (52), Expect = 3e-19
 Identities = 109/128 (85%)
 Strand = Plus / Minus

                                                                       
Query: 172 aacggtagcggcgaagggagacagtctggttcctcttccaagtggctctccttgagggcc 231
           ||||||||||||| ||||| |  |||||||| | |||||| ||||| ||||| || ||||
Sbjct: 655 aacggtagcggcggagggacagggtctggttgcgcttccaggtggccctcctggacggcc 596

                                                                       
Query: 232 tgttcttgtggtggcggtgacccttgccacgcagaccacggaacttctttccagctgaag 291
           |||||||||||||   ||| |||||||||||||| |||||||||||||| || || || |
Sbjct: 595 tgttcttgtggtgagtgtggcccttgccacgcaggccacggaacttcttgcctgcagagg 536

                   
Query: 292 tgagacca 299
           ||||||||
Sbjct: 535 tgagacca 528
to top
>gb|AY109334.1| Zea mays CL3259_2 mRNA sequence
          Length = 1585

 Score =  103 bits (52), Expect = 3e-19
 Identities = 109/128 (85%)
 Strand = Plus / Plus

                                                                        
Query: 172  aacggtagcggcgaagggagacagtctggttcctcttccaagtggctctccttgagggcc 231
            ||||||||||||| ||||| |  |||||||| | |||||| ||||| ||||| || ||||
Sbjct: 933  aacggtagcggcggagggacagggtctggttgcgcttccaggtggccctcctcgacggcc 992

                                                                        
Query: 232  tgttcttgtggtggcggtgacccttgccacgcagaccacggaacttctttccagctgaag 291
            |||||||||||||   ||| |||||||||||||| |||||||||||||| || || || |
Sbjct: 993  tgttcttgtggtgagtgtggcccttgccacgcaggccacggaacttcttgcctgcagagg 1052

                    
Query: 292  tgagacca 299
            ||||||||
Sbjct: 1053 tgagacca 1060
to top
>ref|NM_184952.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 874

 Score = 87.7 bits (44), Expect = 2e-14
 Identities = 110/132 (83%)
 Strand = Plus / Minus

                                                                       
Query: 168 gcttaacggtagcggcgaagggagacagtctggttcctcttccaagtggctctccttgag 227
           |||||||| || |||||||| |||||||||||||| | |||||| || || || |  || 
Sbjct: 662 gcttaacgataacggcgaagagagacagtctggttgcgcttccaggtagccctgcgggac 603

                                                                       
Query: 228 ggcctgttcttgtggtggcggtgacccttgccacgcagaccacggaacttctttccagct 287
           ||||||  |||||||||   |||||||||||| |||||||||||| ||||||| ||||| 
Sbjct: 602 ggcctggccttgtggtgagtgtgacccttgccgcgcagaccacggtacttcttgccagca 543

                       
Query: 288 gaagtgagacca 299
           || |||||||||
Sbjct: 542 gaggtgagacca 531
to top
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score = 87.7 bits (44), Expect = 2e-14
 Identities = 110/132 (83%)
 Strand = Plus / Plus

                                                                            
Query: 168      gcttaacggtagcggcgaagggagacagtctggttcctcttccaagtggctctccttgag 227
                |||||||| || |||||||| |||||||||||||| | |||||| || || || |  || 
Sbjct: 22144740 gcttaacgataacggcgaagagagacagtctggttgcgcttccaggtagccctgcgggac 22144799

                                                                            
Query: 228      ggcctgttcttgtggtggcggtgacccttgccacgcagaccacggaacttctttccagct 287
                ||||||  |||||||||   |||||||||||| |||||||||||| ||||||| ||||| 
Sbjct: 22144800 ggcctggccttgtggtgagtgtgacccttgccgcgcagaccacggtacttcttgccagca 22144859

                            
Query: 288      gaagtgagacca 299
                || |||||||||
Sbjct: 22144860 gaggtgagacca 22144871
to top
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
                sequence
          Length = 36192742

 Score = 87.7 bits (44), Expect = 2e-14
 Identities = 110/132 (83%)
 Strand = Plus / Plus

                                                                            
Query: 168      gcttaacggtagcggcgaagggagacagtctggttcctcttccaagtggctctccttgag 227
                |||||||| || |||||||| |||||||||||||| | |||||| || || || |  || 
Sbjct: 22137769 gcttaacgataacggcgaagagagacagtctggttgcgcttccaggtagccctgcgggac 22137828

                                                                            
Query: 228      ggcctgttcttgtggtggcggtgacccttgccacgcagaccacggaacttctttccagct 287
                ||||||  |||||||||   |||||||||||| |||||||||||| ||||||| ||||| 
Sbjct: 22137829 ggcctggccttgtggtgagtgtgacccttgccgcgcagaccacggtacttcttgccagca 22137888

                            
Query: 288      gaagtgagacca 299
                || |||||||||
Sbjct: 22137889 gaggtgagacca 22137900
to top
>gb|AC109602.6| Oryza sativa chromosome 3 BAC OSJNBa0087M10 genomic sequence,
            complete sequence
          Length = 167397

 Score = 87.7 bits (44), Expect = 2e-14
 Identities = 110/132 (83%)
 Strand = Plus / Minus

                                                                        
Query: 168  gcttaacggtagcggcgaagggagacagtctggttcctcttccaagtggctctccttgag 227
            |||||||| || |||||||| |||||||||||||| | |||||| || || || |  || 
Sbjct: 3542 gcttaacgataacggcgaagagagacagtctggttgcgcttccaggtagccctgcgggac 3483

                                                                        
Query: 228  ggcctgttcttgtggtggcggtgacccttgccacgcagaccacggaacttctttccagct 287
            ||||||  |||||||||   |||||||||||| |||||||||||| ||||||| ||||| 
Sbjct: 3482 ggcctggccttgtggtgagtgtgacccttgccgcgcagaccacggtacttcttgccagca 3423

                        
Query: 288  gaagtgagacca 299
            || |||||||||
Sbjct: 3422 gaggtgagacca 3411
to top
>gb|AC090874.9| Oryza sativa chromosome 3 BAC OJ1523_A02 genomic sequence, complete
             sequence
          Length = 132987

 Score = 87.7 bits (44), Expect = 2e-14
 Identities = 110/132 (83%)
 Strand = Plus / Minus

                                                                         
Query: 168   gcttaacggtagcggcgaagggagacagtctggttcctcttccaagtggctctccttgag 227
             |||||||| || |||||||| |||||||||||||| | |||||| || || || |  || 
Sbjct: 80122 gcttaacgataacggcgaagagagacagtctggttgcgcttccaggtagccctgcgggac 80063

                                                                         
Query: 228   ggcctgttcttgtggtggcggtgacccttgccacgcagaccacggaacttctttccagct 287
             ||||||  |||||||||   |||||||||||| |||||||||||| ||||||| ||||| 
Sbjct: 80062 ggcctggccttgtggtgagtgtgacccttgccgcgcagaccacggtacttcttgccagca 80003

                         
Query: 288   gaagtgagacca 299
             || |||||||||
Sbjct: 80002 gaggtgagacca 79991
to top
>dbj|AK121762.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033090F15, full
           insert sequence
          Length = 906

 Score = 87.7 bits (44), Expect = 2e-14
 Identities = 110/132 (83%)
 Strand = Plus / Minus

                                                                       
Query: 168 gcttaacggtagcggcgaagggagacagtctggttcctcttccaagtggctctccttgag 227
           |||||||| || |||||||| |||||||||||||| | |||||| || || || |  || 
Sbjct: 685 gcttaacgataacggcgaagagagacagtctggttgcgcttccaggtagccctgcgggac 626

                                                                       
Query: 228 ggcctgttcttgtggtggcggtgacccttgccacgcagaccacggaacttctttccagct 287
           ||||||  |||||||||   |||||||||||| |||||||||||| ||||||| ||||| 
Sbjct: 625 ggcctggccttgtggtgagtgtgacccttgccgcgcagaccacggtacttcttgccagca 566

                       
Query: 288 gaagtgagacca 299
           || |||||||||
Sbjct: 565 gaggtgagacca 554
to top
>dbj|AK104774.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-039-B07, full
           insert sequence
          Length = 886

 Score = 87.7 bits (44), Expect = 2e-14
 Identities = 110/132 (83%)
 Strand = Plus / Minus

                                                                       
Query: 168 gcttaacggtagcggcgaagggagacagtctggttcctcttccaagtggctctccttgag 227
           |||||||| || |||||||| |||||||||||||| | |||||| || || || |  || 
Sbjct: 685 gcttaacgataacggcgaagagagacagtctggttgcgcttccaggtagccctgcgggac 626

                                                                       
Query: 228 ggcctgttcttgtggtggcggtgacccttgccacgcagaccacggaacttctttccagct 287
           ||||||  |||||||||   |||||||||||| |||||||||||| ||||||| ||||| 
Sbjct: 625 ggcctggccttgtggtgagtgtgacccttgccgcgcagaccacggtacttcttgccagca 566

                       
Query: 288 gaagtgagacca 299
           || |||||||||
Sbjct: 565 gaggtgagacca 554
to top
>dbj|AK066806.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013079I04, full
           insert sequence
          Length = 811

 Score = 87.7 bits (44), Expect = 2e-14
 Identities = 110/132 (83%)
 Strand = Plus / Minus

                                                                       
Query: 168 gcttaacggtagcggcgaagggagacagtctggttcctcttccaagtggctctccttgag 227
           |||||||| || |||||||| |||||||||||||| | |||||| || || || |  || 
Sbjct: 635 gcttaacgataacggcgaagagagacagtctggttgcgcttccaggtagccctgcgggac 576

                                                                       
Query: 228 ggcctgttcttgtggtggcggtgacccttgccacgcagaccacggaacttctttccagct 287
           ||||||  |||||||||   |||||||||||| |||||||||||| ||||||| ||||| 
Sbjct: 575 ggcctggccttgtggtgagtgtgacccttgccgcgcagaccacggtacttcttgccagca 516

                       
Query: 288 gaagtgagacca 299
           || |||||||||
Sbjct: 515 gaggtgagacca 504
to top
>dbj|AK060928.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-201-A06, full
           insert sequence
          Length = 886

 Score = 87.7 bits (44), Expect = 2e-14
 Identities = 110/132 (83%)
 Strand = Plus / Minus

                                                                       
Query: 168 gcttaacggtagcggcgaagggagacagtctggttcctcttccaagtggctctccttgag 227
           |||||||| || |||||||| |||||||||||||| | |||||| || || || |  || 
Sbjct: 685 gcttaacgataacggcgaagagagacagtctggttgcgcttccaggtagccctgcgggac 626

                                                                       
Query: 228 ggcctgttcttgtggtggcggtgacccttgccacgcagaccacggaacttctttccagct 287
           ||||||  |||||||||   |||||||||||| |||||||||||| ||||||| ||||| 
Sbjct: 625 ggcctggccttgtggtgagtgtgacccttgccgcgcagaccacggtacttcttgccagca 566

                       
Query: 288 gaagtgagacca 299
           || |||||||||
Sbjct: 565 gaggtgagacca 554
to top
>gb|AC137610.2| Oryza sativa (japonica cultivar-group) chromosome 5 BAC clone
             OSJNBa0018H09, complete sequence
          Length = 155329

 Score = 60.0 bits (30), Expect = 4e-06
 Identities = 105/130 (80%)
 Strand = Plus / Minus

                                                                         
Query: 166   aagcttaacggtagcggcgaagggagacagtctggttcctcttccaagtggctctccttg 225
             |||||||||||||||| ||||| ||||| |||||||| | |||||| ||||| || |  |
Sbjct: 51908 aagcttaacggtagcgacgaagagagacggtctggttgcgcttccaggtggccctgcggg 51849

                                                                         
Query: 226   agggcctgttcttgtggtggcggtgacccttgccacgcagaccacggaacttctttccag 285
             | || |||  |||||||||   ||| || ||||| ||||| |||||| ||||||| ||||
Sbjct: 51848 aaggtctggccttgtggtgagtgtggcctttgccgcgcaggccacggtacttcttgccag 51789

                       
Query: 286   ctgaagtgag 295
             | || |||||
Sbjct: 51788 cagaggtgag 51779
to top
>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete
                sequence
          Length = 29737217

 Score = 60.0 bits (30), Expect = 4e-06
 Identities = 105/130 (80%)
 Strand = Plus / Minus

                                                                            
Query: 166      aagcttaacggtagcggcgaagggagacagtctggttcctcttccaagtggctctccttg 225
                |||||||||||||||| ||||| ||||| |||||||| | |||||| ||||| || |  |
Sbjct: 11149654 aagcttaacggtagcgacgaagagagacggtctggttgcgcttccaggtggccctgcggg 11149595

                                                                            
Query: 226      agggcctgttcttgtggtggcggtgacccttgccacgcagaccacggaacttctttccag 285
                | || |||  |||||||||   ||| || ||||| ||||| |||||| ||||||| ||||
Sbjct: 11149594 aaggtctggccttgtggtgagtgtggcctttgccgcgcaggccacggtacttcttgccag 11149535

                          
Query: 286      ctgaagtgag 295
                | || |||||
Sbjct: 11149534 cagaggtgag 11149525
to top
>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete
                sequence
          Length = 30731886

 Score = 44.1 bits (22), Expect = 0.25
 Identities = 37/42 (88%)
 Strand = Plus / Minus

                                                          
Query: 170      ttaacggtagcggcgaagggagacagtctggttcctcttcca 211
                |||||||||||| ||||| ||||| |||||||| | ||||||
Sbjct: 11538751 ttaacggtagcgccgaagagagacggtctggttgcgcttcca 11538710
to top
>dbj|AP006054.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC
              clone:P0417E03
          Length = 133019

 Score = 44.1 bits (22), Expect = 0.25
 Identities = 37/42 (88%)
 Strand = Plus / Minus

                                                        
Query: 170    ttaacggtagcggcgaagggagacagtctggttcctcttcca 211
              |||||||||||| ||||| ||||| |||||||| | ||||||
Sbjct: 107994 ttaacggtagcgccgaagagagacggtctggttgcgcttcca 107953
to top
>dbj|AP005852.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC
             clone:P0414E10
          Length = 141760

 Score = 44.1 bits (22), Expect = 0.25
 Identities = 37/42 (88%)
 Strand = Plus / Minus

                                                       
Query: 170   ttaacggtagcggcgaagggagacagtctggttcctcttcca 211
             |||||||||||| ||||| ||||| |||||||| | ||||||
Sbjct: 16637 ttaacggtagcgccgaagagagacggtctggttgcgcttcca 16596
to top
>gb|DQ284461.1| Solanum tuberosum clone 071F06 60S ribosomal protein L15-like mRNA,
           complete cds
          Length = 721

 Score = 44.1 bits (22), Expect = 0.25
 Identities = 49/58 (84%)
 Strand = Plus / Minus

                                                                     
Query: 172 aacggtagcggcgaagggagacagtctggttcctcttccaagtggctctccttgaggg 229
           ||||||| |||||||| || | |||||||||||| ||||| || || || ||||||||
Sbjct: 621 aacggtaacggcgaagagatagagtctggttccttttccaggttgcccttcttgaggg 564



 Score = 40.1 bits (20), Expect = 3.9
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 276 ttctttccagctgaagtgagacca 299
           ||||| ||||||||||||||||||
Sbjct: 517 ttcttaccagctgaagtgagacca 494
to top
>ref|NM_117842.2| Arabidopsis thaliana MSH4 (MUTS-LIKE PROTEIN 4); ATP binding /
            damaged DNA binding AT4G17380 (MSH4) mRNA, complete cds
          Length = 3023

 Score = 42.1 bits (21), Expect = 0.99
 Identities = 36/41 (87%)
 Strand = Plus / Plus

                                                     
Query: 231  ctgttcttgtggtggcggtgacccttgccacgcagaccacg 271
            ||||||||||||| |  ||||||||| ||||| ||||||||
Sbjct: 2837 ctgttcttgtggttgttgtgaccctttccacgaagaccacg 2877
to top
>ref|NM_117843.2| Arabidopsis thaliana structural constituent of ribosome AT4G17390
           mRNA, complete cds
          Length = 876

 Score = 42.1 bits (21), Expect = 0.99
 Identities = 36/41 (87%)
 Strand = Plus / Minus

                                                    
Query: 231 ctgttcttgtggtggcggtgacccttgccacgcagaccacg 271
           ||||||||||||| |  ||||||||| ||||| ||||||||
Sbjct: 621 ctgttcttgtggttgttgtgaccctttccacgaagaccacg 581
to top
>emb|Z97343.1|ATFCA8 Arabidopsis thaliana DNA chromosome 4, ESSA I FCA contig fragment No. 8
          Length = 207674

 Score = 42.1 bits (21), Expect = 0.99
 Identities = 36/41 (87%)
 Strand = Plus / Plus

                                                      
Query: 231   ctgttcttgtggtggcggtgacccttgccacgcagaccacg 271
             ||||||||||||| |  ||||||||| ||||| ||||||||
Sbjct: 79239 ctgttcttgtggttgttgtgaccctttccacgaagaccacg 79279
to top
>gb|AY122965.1| Arabidopsis thaliana putative 60S ribosomal protein L15-like
           protein (At4g17390) mRNA, complete cds
          Length = 646

 Score = 42.1 bits (21), Expect = 0.99
 Identities = 36/41 (87%)
 Strand = Plus / Minus

                                                    
Query: 231 ctgttcttgtggtggcggtgacccttgccacgcagaccacg 271
           ||||||||||||| |  ||||||||| ||||| ||||||||
Sbjct: 554 ctgttcttgtggttgttgtgaccctttccacgaagaccacg 514
to top
>gb|AY072118.1| Arabidopsis thaliana putative 60S ribosomal protein L15-like
           protein (At4g17390) mRNA, complete cds
          Length = 820

 Score = 42.1 bits (21), Expect = 0.99
 Identities = 36/41 (87%)
 Strand = Plus / Minus

                                                    
Query: 231 ctgttcttgtggtggcggtgacccttgccacgcagaccacg 271
           ||||||||||||| |  ||||||||| ||||| ||||||||
Sbjct: 577 ctgttcttgtggttgttgtgaccctttccacgaagaccacg 537
to top
>emb|AL161546.2|ATCHRIV46 Arabidopsis thaliana DNA chromosome 4, contig fragment No. 46
          Length = 198788

 Score = 42.1 bits (21), Expect = 0.99
 Identities = 36/41 (87%)
 Strand = Plus / Plus

                                                      
Query: 231   ctgttcttgtggtggcggtgacccttgccacgcagaccacg 271
             ||||||||||||| |  ||||||||| ||||| ||||||||
Sbjct: 68604 ctgttcttgtggttgttgtgaccctttccacgaagaccacg 68644
to top
>gb|AC091202.3| Drosophila melanogaster 3L BAC RP98-30A3 (Roswell Park Cancer Institute
              Drosophila BAC Library) complete sequence
          Length = 171209

 Score = 42.1 bits (21), Expect = 0.99
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                       
Query: 237    ttgtggtggcggtgacccttgccac 261
              |||||||||||||| ||||||||||
Sbjct: 118480 ttgtggtggcggtgccccttgccac 118456
to top
>gb|AC157544.7| Mus musculus chromosome 8, clone RP23-271P20, complete sequence
          Length = 159843

 Score = 42.1 bits (21), Expect = 0.99
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 12     gatcattcagttttcaggtaa 32
              |||||||||||||||||||||
Sbjct: 101751 gatcattcagttttcaggtaa 101771
to top
>emb|BX827071.1|CNS0A47Q Arabidopsis thaliana Full-length cDNA Complete sequence from clone
           GSLTFB91ZE04 of Flowers and buds of strain col-0 of
           Arabidopsis thaliana (thale cress)
          Length = 755

 Score = 42.1 bits (21), Expect = 0.99
 Identities = 36/41 (87%)
 Strand = Plus / Minus

                                                    
Query: 231 ctgttcttgtggtggcggtgacccttgccacgcagaccacg 271
           ||||||||||||| |  ||||||||| ||||| ||||||||
Sbjct: 551 ctgttcttgtggttgttgtgaccctttccacgaagaccacg 511
to top
>emb|BX828288.1|CNS0A3VG Arabidopsis thaliana Full-length cDNA Complete sequence from clone
           GSLTPGH71ZC09 of Hormone Treated Callus of strain col-0
           of Arabidopsis thaliana (thale cress)
          Length = 737

 Score = 42.1 bits (21), Expect = 0.99
 Identities = 36/41 (87%)
 Strand = Plus / Minus

                                                    
Query: 231 ctgttcttgtggtggcggtgacccttgccacgcagaccacg 271
           ||||||||||||| |  ||||||||| ||||| ||||||||
Sbjct: 551 ctgttcttgtggttgttgtgaccctttccacgaagaccacg 511
to top
>gb|AC114783.5| Homo sapiens BAC clone RP11-600N14 from 2, complete sequence
          Length = 106643

 Score = 42.1 bits (21), Expect = 0.99
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                      
Query: 203   cctcttccaagtggctctccttgag 227
             |||||| ||||||||||||||||||
Sbjct: 62944 cctctttcaagtggctctccttgag 62920
to top
>gb|AY087088.1| Arabidopsis thaliana clone 31538 mRNA, complete sequence
          Length = 754

 Score = 42.1 bits (21), Expect = 0.99
 Identities = 36/41 (87%)
 Strand = Plus / Minus

                                                    
Query: 231 ctgttcttgtggtggcggtgacccttgccacgcagaccacg 271
           ||||||||||||| |  ||||||||| ||||| ||||||||
Sbjct: 581 ctgttcttgtggttgttgtgaccctttccacgaagaccacg 541
to top
>gb|AC097449.3| Homo sapiens BAC clone CTD-2140E23 from 2, complete sequence
          Length = 104837

 Score = 42.1 bits (21), Expect = 0.99
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                      
Query: 203   cctcttccaagtggctctccttgag 227
             |||||| ||||||||||||||||||
Sbjct: 61224 cctctttcaagtggctctccttgag 61200
to top
>emb|BX005128.4| Zebrafish DNA sequence from clone CH211-129H14 in linkage group 17,
             complete sequence
          Length = 152345

 Score = 42.1 bits (21), Expect = 0.99
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 89    aaggtaacaaaaaattggact 109
             |||||||||||||||||||||
Sbjct: 61663 aaggtaacaaaaaattggact 61683
to top
>gb|AE003563.4| Drosophila melanogaster chromosome 3L, section 22 of 83 of the complete
              sequence
          Length = 264966

 Score = 42.1 bits (21), Expect = 0.99
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                       
Query: 237    ttgtggtggcggtgacccttgccac 261
              |||||||||||||| ||||||||||
Sbjct: 231416 ttgtggtggcggtgccccttgccac 231392
to top
>gb|AC004349.1|AC004349 Drosophila melanogaster DNA sequence (P1 DS04327 (D251)), complete
           sequence
          Length = 81602

 Score = 42.1 bits (21), Expect = 0.99
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                    
Query: 237 ttgtggtggcggtgacccttgccac 261
           |||||||||||||| ||||||||||
Sbjct: 919 ttgtggtggcggtgccccttgccac 895
to top
>ref|XM_633045.1| Dictyostelium discoideum hypothetical protein (DDB0186582), partial
            mRNA
          Length = 2958

 Score = 40.1 bits (20), Expect = 3.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 118  tattatcaaggtgagcatag 137
            ||||||||||||||||||||
Sbjct: 1138 tattatcaaggtgagcatag 1157
to top
>gb|BT013339.1| Lycopersicon esculentum clone 135132F, mRNA sequence
          Length = 841

 Score = 40.1 bits (20), Expect = 3.9
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 276 ttctttccagctgaagtgagacca 299
           ||||| ||||||||||||||||||
Sbjct: 552 ttcttaccagctgaagtgagacca 529
to top
>gb|AC146163.3| Pan troglodytes BAC clone RP43-24D16 from 7, complete sequence
          Length = 162475

 Score = 40.1 bits (20), Expect = 3.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 280   ttccagctgaagtgagacca 299
             ||||||||||||||||||||
Sbjct: 71159 ttccagctgaagtgagacca 71178
to top
>gb|AC004745.2| Homo sapiens BAC clone CTA-281B9 from 7, complete sequence
          Length = 97137

 Score = 40.1 bits (20), Expect = 3.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 280   ttccagctgaagtgagacca 299
             ||||||||||||||||||||
Sbjct: 82473 ttccagctgaagtgagacca 82492
to top
>emb|AL391358.14| Human DNA sequence from clone RP11-197B12 on chromosome Xq23-24,
             complete sequence
          Length = 104309

 Score = 40.1 bits (20), Expect = 3.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 276   ttctttccagctgaagtgag 295
             ||||||||||||||||||||
Sbjct: 45969 ttctttccagctgaagtgag 45988
to top
>gb|AC117661.20| Mus musculus chromosome 6, clone RP23-343P1, complete sequence
          Length = 180209

 Score = 40.1 bits (20), Expect = 3.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 57    acagacatgcctggagattg 76
             ||||||||||||||||||||
Sbjct: 34423 acagacatgcctggagattg 34442
to top
>emb|BX901883.5| Zebrafish DNA sequence from clone DKEY-151M15 in linkage group 3,
              complete sequence
          Length = 241961

 Score = 40.1 bits (20), Expect = 3.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 14     tcattcagttttcaggtaat 33
              ||||||||||||||||||||
Sbjct: 109062 tcattcagttttcaggtaat 109081
to top
>gb|AE010202.1| Pyrococcus furiosus DSM 3638, section 77 of 173 of the complete
            genome
          Length = 10584

 Score = 40.1 bits (20), Expect = 3.9
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 275  cttctttccagctgaagtgagacc 298
            ||||||||||||||| ||||||||
Sbjct: 7555 cttctttccagctgatgtgagacc 7578
to top
>gb|AC102373.13| Mus musculus chromosome 3, clone RP23-263O17, complete sequence
          Length = 198848

 Score = 40.1 bits (20), Expect = 3.9
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 42    atagcaaatagtttaacagacatg 65
             |||| |||||||||||||||||||
Sbjct: 52122 ataggaaatagtttaacagacatg 52099
to top
>gb|AF154663.1| Nicotiana tabacum clone PR55 mRNA sequence
          Length = 888

 Score = 40.1 bits (20), Expect = 3.9
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 276 ttctttccagctgaagtgagacca 299
           ||||| ||||||||||||||||||
Sbjct: 586 ttcttaccagctgaagtgagacca 563
to top
>gb|AC122362.5| Mus musculus BAC clone RP23-430N1 from chromosome 6, complete sequence
          Length = 212275

 Score = 40.1 bits (20), Expect = 3.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 57     acagacatgcctggagattg 76
              ||||||||||||||||||||
Sbjct: 195336 acagacatgcctggagattg 195355
to top
>gb|AC174449.2| Mus musculus BAC clone RP23-338O19 from chromosome 6, complete
            sequence
          Length = 217169

 Score = 40.1 bits (20), Expect = 3.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 57   acagacatgcctggagattg 76
            ||||||||||||||||||||
Sbjct: 4815 acagacatgcctggagattg 4834
to top
>dbj|AP001360.5| Homo sapiens genomic DNA, chromosome 11 clone:RP11-831A10, complete
             sequence
          Length = 190766

 Score = 40.1 bits (20), Expect = 3.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 207   ttccaagtggctctccttga 226
             ||||||||||||||||||||
Sbjct: 61091 ttccaagtggctctccttga 61110
to top
>emb|AL732475.6| Mouse DNA sequence from clone RP23-202H24 on chromosome X, complete
            sequence
          Length = 165720

 Score = 40.1 bits (20), Expect = 3.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 271  ggaacttctttccagctgaa 290
            ||||||||||||||||||||
Sbjct: 9867 ggaacttctttccagctgaa 9886
to top
>gb|M17145.1|RCCICL4 Castor bean (R.communis) isocitrate lyase mRNA, complete cds
          Length = 2036

 Score = 40.1 bits (20), Expect = 3.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 163 acaaagcttaacggtagcgg 182
           ||||||||||||||||||||
Sbjct: 593 acaaagcttaacggtagcgg 574


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2,667,586
Number of Sequences: 3902068
Number of extensions: 2667586
Number of successful extensions: 47032
Number of sequences better than 10.0: 51
Number of HSP's better than 10.0 without gapping: 51
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 46855
Number of HSP's gapped (non-prelim): 167
length of query: 299
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 277
effective length of database: 17,147,199,772
effective search space: 4749774336844
effective search space used: 4749774336844
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
to top