ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbart59f01
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1ref|XM_550389.1| Oryza sativa (japonica cultivar-group), mRNA 50 0.005
2dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic D... 50 0.005
3dbj|AP002524.2| Oryza sativa (japonica cultivar-group) genomic D... 50 0.005
4dbj|AP008230.1| Desulfitobacterium hafniense Y51 genomic DNA, co... 44 0.31
5gb|CP000141.1| Carboxydothermus hydrogenoformans Z-2901, complet... 42 1.2
6gb|CP000151.1| Burkholderia sp. 383 chromosome 1, complete sequence 42 1.2
7gb|CP000017.1| Streptococcus pyogenes MGAS5005, complete genome 42 1.2
8gb|CP000003.1| Streptococcus pyogenes MGAS10394, complete genome 42 1.2
9gb|CP000262.1| Streptococcus pyogenes MGAS10750, complete genome 42 1.2
10gb|CP000261.1| Streptococcus pyogenes MGAS2096, complete genome 42 1.2
11gb|CP000260.1| Streptococcus pyogenes MGAS10270, complete genome 42 1.2
12gb|CP000259.1| Streptococcus pyogenes MGAS9429, complete genome 42 1.2
13gb|CP000301.1| Rhodopseudomonas palustris BisB18, complete genome 42 1.2
14gb|AE012237.1| Xanthomonas campestris pv. campestris str. ATCC 3... 42 1.2
15gb|AE010008.1| Streptococcus pyogenes strain MGAS8232, section 5... 42 1.2
16gb|CP000050.1| Xanthomonas campestris pv. campestris str. 8004, ... 42 1.2
17gb|AC097586.3| Sus scrofa clone RP44-394E19, complete sequence 42 1.2
18gb|AE014074.1| Streptococcus pyogenes MGAS315, complete genome 42 1.2
19gb|AC130466.2| Homo sapiens chromosome 16 clone CTC-591M7, compl... 42 1.2
20dbj|BA000034.2| Streptococcus pyogenes SSI-1 DNA, complete genome 42 1.2
21gb|AY647260.1| Escherichia coli O145 O-antigen gene cluster, par... 40 4.9
22gb|AC137594.2| Oryza sativa (japonica cultivar-group) chromosome... 40 4.9
23gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 40 4.9
24emb|AM039952.1| Xanthomonas campestris pv. vesicatoria complete ... 40 4.9
25gb|AC139934.9| Mus musculus chromosome 12, clone RP23-39G14, com... 40 4.9
26gb|AC127561.4| Mus musculus BAC clone RP24-273G7 from chromosome... 40 4.9
27gb|AC125451.7| Mus musculus chromosome 12, clone RP23-41O6, comp... 40 4.9
28gb|L02630.5| Xanthomonas campestris XpsE (xpsE), XpsF (xpsF), Xp... 40 4.9
29emb|AL139036.12| Human DNA sequence from clone RP11-285H24 on ch... 40 4.9
30emb|BX640449.1| Bordetella bronchiseptica strain RB50, complete ... 40 4.9
31emb|BX640442.1| Bordetella bronchiseptica strain RB50, complete ... 40 4.9
32emb|BX640434.1| Bordetella parapertussis strain 12822, complete ... 40 4.9
33emb|BX640430.1| Bordetella parapertussis strain 12822, complete ... 40 4.9
34emb|BX640421.1| Bordetella pertussis strain Tohama I, complete g... 40 4.9
35emb|BX640416.1| Bordetella pertussis strain Tohama I, complete g... 40 4.9
36emb|CR792458.6| Zebrafish DNA sequence from clone RP71-47I2, com... 40 4.9
37gb|AC090459.6| Homo sapiens chromosome 18, clone RP11-125E6, com... 40 4.9
38gb|AC099845.2| Homo sapiens chromosome 18, clone RP11-812D21, co... 40 4.9
39gb|AE012497.1| Xanthomonas campestris pv. campestris str. ATCC 3... 40 4.9
40gb|AC103784.2| Homo sapiens chromosome 8, clone RP11-715C17, com... 40 4.9
41gb|AC023405.6| Homo sapiens chromosome 8, clone RP11-199K17, com... 40 4.9
42gb|AY863412.1| Escherichia coli O145 O antigen gene cluster, com... 40 4.9
43dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic D... 40 4.9
44dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic D... 40 4.9
45gb|AC074290.5| Homo sapiens BAC clone RP11-305O20 from 2, comple... 40 4.9
46gb|AC105928.2| Oryza sativa (japonica cultivar-group) chromosome... 40 4.9
47dbj|AP006618.1| Nocardia farcinica IFM 10152 DNA, complete genome 40 4.9
48dbj|AK121935.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 4.9
49dbj|AK121679.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 4.9
50dbj|AK102869.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 4.9
51emb|AL646052.1| Ralstonia solanacearum GMI1000 chromosome comple... 40 4.9
52emb|AL357153.4|CNS05TDV Human chromosome 14 DNA sequence BAC C-2... 40 4.9
53gb|AE000513.1| Deinococcus radiodurans R1 chromosome 1, complete... 40 4.9
54gb|AF042156.1|AF042156 Xanthomonas campestris pv. campestris hea... 40 4.9
55emb|AL805962.5| Mouse DNA sequence from clone RP23-121I18 on chr... 40 4.9
56dbj|AB034704.1| Rubrivivax gelatinosus photosynthetic gene clust... 40 4.9 
>ref|XM_550389.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1455

 Score = 50.1 bits (25), Expect = 0.005
 Identities = 37/41 (90%)
 Strand = Plus / Minus

                                                     
Query: 278  tccgacgacccgccgccggccagcgccgcacgcgccttctc 318
            |||||||| |||||| |||||| |||||| |||||||||||
Sbjct: 1412 tccgacgagccgccgtcggccaccgccgcccgcgccttctc 1372
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>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
               sequence
          Length = 43261740

 Score = 50.1 bits (25), Expect = 0.005
 Identities = 37/41 (90%)
 Strand = Plus / Plus

                                                        
Query: 278     tccgacgacccgccgccggccagcgccgcacgcgccttctc 318
               |||||||| |||||| |||||| |||||| |||||||||||
Sbjct: 4152232 tccgacgagccgccgtcggccaccgccgcccgcgccttctc 4152272
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>dbj|AP002524.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
             clone:P0406H10
          Length = 156419

 Score = 50.1 bits (25), Expect = 0.005
 Identities = 37/41 (90%)
 Strand = Plus / Plus

                                                      
Query: 278   tccgacgacccgccgccggccagcgccgcacgcgccttctc 318
             |||||||| |||||| |||||| |||||| |||||||||||
Sbjct: 99203 tccgacgagccgccgtcggccaccgccgcccgcgccttctc 99243
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>dbj|AP008230.1| Desulfitobacterium hafniense Y51 genomic DNA, complete genome
          Length = 5727534

 Score = 44.1 bits (22), Expect = 0.31
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                     
Query: 38      aaattacagttttagcaaaact 59
               ||||||||||||||||||||||
Sbjct: 5123745 aaattacagttttagcaaaact 5123724
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>gb|CP000141.1| Carboxydothermus hydrogenoformans Z-2901, complete genome
          Length = 2401520

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                    
Query: 39      aattacagttttagcaaaact 59
               |||||||||||||||||||||
Sbjct: 1666788 aattacagttttagcaaaact 1666808
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>gb|CP000151.1| Burkholderia sp. 383 chromosome 1, complete sequence
          Length = 3694126

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                    
Query: 291     cgccggccagcgccgcacgcg 311
               |||||||||||||||||||||
Sbjct: 3244808 cgccggccagcgccgcacgcg 3244788
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>gb|CP000017.1| Streptococcus pyogenes MGAS5005, complete genome
          Length = 1838554

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                    
Query: 160     ccttagtgacctcaaacgtct 180
               |||||||||||||||||||||
Sbjct: 1393461 ccttagtgacctcaaacgtct 1393481
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>gb|CP000003.1| Streptococcus pyogenes MGAS10394, complete genome
          Length = 1899877

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 160   ccttagtgacctcaaacgtct 180
             |||||||||||||||||||||
Sbjct: 66852 ccttagtgacctcaaacgtct 66832
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>gb|CP000262.1| Streptococcus pyogenes MGAS10750, complete genome
          Length = 1937111

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 160    ccttagtgacctcaaacgtct 180
              |||||||||||||||||||||
Sbjct: 581831 ccttagtgacctcaaacgtct 581811
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>gb|CP000261.1| Streptococcus pyogenes MGAS2096, complete genome
          Length = 1860355

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                    
Query: 160     ccttagtgacctcaaacgtct 180
               |||||||||||||||||||||
Sbjct: 1411804 ccttagtgacctcaaacgtct 1411824



 Score = 42.1 bits (21), Expect = 1.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 160    ccttagtgacctcaaacgtct 180
              |||||||||||||||||||||
Sbjct: 564375 ccttagtgacctcaaacgtct 564355
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>gb|CP000260.1| Streptococcus pyogenes MGAS10270, complete genome
          Length = 1928252

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                    
Query: 160     ccttagtgacctcaaacgtct 180
               |||||||||||||||||||||
Sbjct: 1264874 ccttagtgacctcaaacgtct 1264894



 Score = 42.1 bits (21), Expect = 1.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 160    ccttagtgacctcaaacgtct 180
              |||||||||||||||||||||
Sbjct: 564654 ccttagtgacctcaaacgtct 564634
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>gb|CP000259.1| Streptococcus pyogenes MGAS9429, complete genome
          Length = 1836467

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                    
Query: 160     ccttagtgacctcaaacgtct 180
               |||||||||||||||||||||
Sbjct: 1387914 ccttagtgacctcaaacgtct 1387934



 Score = 42.1 bits (21), Expect = 1.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 160    ccttagtgacctcaaacgtct 180
              |||||||||||||||||||||
Sbjct: 563377 ccttagtgacctcaaacgtct 563357
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>gb|CP000301.1| Rhodopseudomonas palustris BisB18, complete genome
          Length = 5513844

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                        
Query: 281     gacgacccgccgccggccagcgccg 305
               |||||||||||||||||| ||||||
Sbjct: 5116102 gacgacccgccgccggccggcgccg 5116078
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>gb|AE012237.1| Xanthomonas campestris pv. campestris str. ATCC 33913,  section 145
            of 460 of the complete genome
          Length = 13060

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 294  cggccagcgccgcacgcgcct 314
            |||||||||||||||||||||
Sbjct: 9670 cggccagcgccgcacgcgcct 9650
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>gb|AE010008.1| Streptococcus pyogenes strain MGAS8232, section 56 of 173 of the
            complete genome
          Length = 11277

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 160  ccttagtgacctcaaacgtct 180
            |||||||||||||||||||||
Sbjct: 1790 ccttagtgacctcaaacgtct 1770
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>gb|CP000050.1| Xanthomonas campestris pv. campestris str. 8004, complete genome
          Length = 5148708

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                    
Query: 294     cggccagcgccgcacgcgcct 314
               |||||||||||||||||||||
Sbjct: 3436191 cggccagcgccgcacgcgcct 3436211



 Score = 40.1 bits (20), Expect = 4.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 287     ccgccgccggccagcgccgc 306
               ||||||||||||||||||||
Sbjct: 4540317 ccgccgccggccagcgccgc 4540298
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>gb|AC097586.3| Sus scrofa clone RP44-394E19, complete sequence
          Length = 174554

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 28    gaatgatgtcaaattacagtt 48
             |||||||||||||||||||||
Sbjct: 34856 gaatgatgtcaaattacagtt 34836
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>gb|AE014074.1| Streptococcus pyogenes MGAS315, complete genome
          Length = 1900521

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                    
Query: 160     ccttagtgacctcaaacgtct 180
               |||||||||||||||||||||
Sbjct: 1419205 ccttagtgacctcaaacgtct 1419225
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>gb|AC130466.2| Homo sapiens chromosome 16 clone CTC-591M7, complete sequence
          Length = 106998

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 184   gtttgtgtttgttttcaaagg 204
             |||||||||||||||||||||
Sbjct: 80177 gtttgtgtttgttttcaaagg 80197
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>dbj|BA000034.2| Streptococcus pyogenes SSI-1 DNA, complete genome
          Length = 1894275

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 160    ccttagtgacctcaaacgtct 180
              |||||||||||||||||||||
Sbjct: 477680 ccttagtgacctcaaacgtct 477660
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>gb|AY647260.1| Escherichia coli O145 O-antigen gene cluster, partial sequence
          Length = 15475

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 39  aattacagttttagcaaaac 58
           ||||||||||||||||||||
Sbjct: 177 aattacagttttagcaaaac 158
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>gb|AC137594.2| Oryza sativa (japonica cultivar-group) chromosome 9 BAC clone
             OSJNBa0065A15, complete sequence
          Length = 168806

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 287   ccgccgccggccagcgccgc 306
             ||||||||||||||||||||
Sbjct: 71034 ccgccgccggccagcgccgc 71053
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>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 287     ccgccgccggccagcgccgc 306
               ||||||||||||||||||||
Sbjct: 5653347 ccgccgccggccagcgccgc 5653328
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>emb|AM039952.1| Xanthomonas campestris pv. vesicatoria complete genome
          Length = 5178466

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 288     cgccgccggccagcgccgca 307
               ||||||||||||||||||||
Sbjct: 4624734 cgccgccggccagcgccgca 4624753
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>gb|AC139934.9| Mus musculus chromosome 12, clone RP23-39G14, complete sequence
          Length = 312488

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 246   ttatttggtcaacaaaagct 265
             ||||||||||||||||||||
Sbjct: 35939 ttatttggtcaacaaaagct 35920
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>gb|AC127561.4| Mus musculus BAC clone RP24-273G7 from chromosome 5, complete sequence
          Length = 202290

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 185    tttgtgtttgttttcaaagg 204
              ||||||||||||||||||||
Sbjct: 144467 tttgtgtttgttttcaaagg 144486
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>gb|AC125451.7| Mus musculus chromosome 12, clone RP23-41O6, complete sequence
          Length = 236838

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 246    ttatttggtcaacaaaagct 265
              ||||||||||||||||||||
Sbjct: 109122 ttatttggtcaacaaaagct 109141
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>gb|L02630.5| Xanthomonas campestris XpsE (xpsE), XpsF (xpsF), XpsG (xpsG), XpsH
           (xpsH), XpsI (xpsI), XpsJ (xpsJ), XpsK (xpsK), and XpsL
           (xpsL) genes, complete cds
          Length = 7813

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 287 ccgccgccggccagcgccgc 306
           ||||||||||||||||||||
Sbjct: 101 ccgccgccggccagcgccgc 120
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>emb|AL139036.12| Human DNA sequence from clone RP11-285H24 on chromosome 13q22.1-22.3
             Contains the 5' end of the KLF12 gene for Kruppel-like
             factor 12, complete sequence
          Length = 109810

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 97    acactccattaagtgctaat 116
             ||||||||||||||||||||
Sbjct: 88439 acactccattaagtgctaat 88420
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>emb|BX640449.1| Bordetella bronchiseptica strain RB50, complete genome; segment 13/16
          Length = 348074

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 287   ccgccgccggccagcgccgc 306
             ||||||||||||||||||||
Sbjct: 61664 ccgccgccggccagcgccgc 61683
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>emb|BX640442.1| Bordetella bronchiseptica strain RB50, complete genome; segment 6/16
          Length = 349876

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 294    cggccagcgccgcacgcgcc 313
              ||||||||||||||||||||
Sbjct: 106718 cggccagcgccgcacgcgcc 106699
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>emb|BX640434.1| Bordetella parapertussis strain 12822, complete genome; segment 12/14
          Length = 344805

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 287   ccgccgccggccagcgccgc 306
             ||||||||||||||||||||
Sbjct: 14468 ccgccgccggccagcgccgc 14487
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>emb|BX640430.1| Bordetella parapertussis strain 12822, complete genome; segment 8/14
          Length = 348014

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 294   cggccagcgccgcacgcgcc 313
             ||||||||||||||||||||
Sbjct: 17618 cggccagcgccgcacgcgcc 17599
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>emb|BX640421.1| Bordetella pertussis strain Tohama I, complete genome; segment 11/12
          Length = 349726

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 287    ccgccgccggccagcgccgc 306
              ||||||||||||||||||||
Sbjct: 131669 ccgccgccggccagcgccgc 131688
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>emb|BX640416.1| Bordetella pertussis strain Tohama I, complete genome; segment 6/12
          Length = 349354

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 294    cggccagcgccgcacgcgcc 313
              ||||||||||||||||||||
Sbjct: 302551 cggccagcgccgcacgcgcc 302532
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>emb|CR792458.6| Zebrafish DNA sequence from clone RP71-47I2, complete sequence
          Length = 186632

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 338   agttccatctctcccgcctc 357
             ||||||||||||||||||||
Sbjct: 80380 agttccatctctcccgcctc 80361
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>gb|AC090459.6| Homo sapiens chromosome 18, clone RP11-125E6, complete sequence
          Length = 146310

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 185    tttgtgtttgttttcaaagggagt 208
              ||||| ||||||||||||||||||
Sbjct: 118117 tttgtctttgttttcaaagggagt 118094
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>gb|AC099845.2| Homo sapiens chromosome 18, clone RP11-812D21, complete sequence
          Length = 189559

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 185    tttgtgtttgttttcaaagggagt 208
              ||||| ||||||||||||||||||
Sbjct: 142833 tttgtctttgttttcaaagggagt 142856
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>gb|AE012497.1| Xanthomonas campestris pv. campestris str. ATCC 33913,  section 405 of
             460 of the complete genome
          Length = 13105

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 287   ccgccgccggccagcgccgc 306
             ||||||||||||||||||||
Sbjct: 12841 ccgccgccggccagcgccgc 12822
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>gb|AC103784.2| Homo sapiens chromosome 8, clone RP11-715C17, complete sequence
          Length = 175745

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 181   tacgtttgtgtttgttttca 200
             ||||||||||||||||||||
Sbjct: 22515 tacgtttgtgtttgttttca 22496
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>gb|AC023405.6| Homo sapiens chromosome 8, clone RP11-199K17, complete sequence
          Length = 151859

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 181    tacgtttgtgtttgttttca 200
              ||||||||||||||||||||
Sbjct: 109072 tacgtttgtgtttgttttca 109091
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>gb|AY863412.1| Escherichia coli O145 O antigen gene cluster, complete sequence
          Length = 15631

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 39  aattacagttttagcaaaac 58
           ||||||||||||||||||||
Sbjct: 177 aattacagttttagcaaaac 158
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>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete
                sequence
          Length = 22696651

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 287      ccgccgccggccagcgccgc 306
                ||||||||||||||||||||
Sbjct: 19587959 ccgccgccggccagcgccgc 19587978
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>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
               sequence
          Length = 36192742

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 287     ccgccgccggccagcgccgc 306
               ||||||||||||||||||||
Sbjct: 5652560 ccgccgccggccagcgccgc 5652541
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>gb|AC074290.5| Homo sapiens BAC clone RP11-305O20 from 2, complete sequence
          Length = 172706

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 185   tttgtgtttgttttcaaagggagt 208
             ||||||| ||||||||||||||||
Sbjct: 42438 tttgtgtctgttttcaaagggagt 42415
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>gb|AC105928.2| Oryza sativa (japonica cultivar-group) chromosome 3 clone OSJNBa0014O06,
              complete sequence
          Length = 168031

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 287    ccgccgccggccagcgccgc 306
              ||||||||||||||||||||
Sbjct: 117046 ccgccgccggccagcgccgc 117027
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>dbj|AP006618.1| Nocardia farcinica IFM 10152 DNA, complete genome
          Length = 6021225

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 287     ccgccgccggccagcgccgc 306
               ||||||||||||||||||||
Sbjct: 5547028 ccgccgccggccagcgccgc 5547009
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>dbj|AK121935.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033107A08, full
            insert sequence
          Length = 2096

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 287  ccgccgccggccagcgccgc 306
            ||||||||||||||||||||
Sbjct: 1787 ccgccgccggccagcgccgc 1768
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>dbj|AK121679.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033069H08, full
            insert sequence
          Length = 2059

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 287  ccgccgccggccagcgccgc 306
            ||||||||||||||||||||
Sbjct: 1744 ccgccgccggccagcgccgc 1725
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>dbj|AK102869.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033111O12, full
            insert sequence
          Length = 1993

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 287  ccgccgccggccagcgccgc 306
            ||||||||||||||||||||
Sbjct: 1678 ccgccgccggccagcgccgc 1659
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>emb|AL646052.1| Ralstonia solanacearum GMI1000 chromosome complete sequence
          Length = 3716413

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 279    ccgacgacccgccgccggcc 298
              ||||||||||||||||||||
Sbjct: 301981 ccgacgacccgccgccggcc 301962
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>emb|AL357153.4|CNS05TDV Human chromosome 14 DNA sequence BAC C-2540L5 of library CalTech-D from
             chromosome 14 of Homo sapiens (Human), complete sequence
          Length = 209483

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 186   ttgtgtttgttttcaaagggagta 209
             ||||||| ||||||||||||||||
Sbjct: 41566 ttgtgttggttttcaaagggagta 41543
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>gb|AE000513.1| Deinococcus radiodurans R1 chromosome 1, complete sequence
          Length = 2648638

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 286    cccgccgccggccagcgccgcacg 309
              ||||||||| ||||||||||||||
Sbjct: 232356 cccgccgcctgccagcgccgcacg 232333
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>gb|AF042156.1|AF042156 Xanthomonas campestris pv. campestris heat shock sigma factor 32
            (rpoH) gene, complete cds
          Length = 2063

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 287  ccgccgccggccagcgccgc 306
            ||||||||||||||||||||
Sbjct: 1603 ccgccgccggccagcgccgc 1622
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>emb|AL805962.5| Mouse DNA sequence from clone RP23-121I18 on chromosome X, complete
             sequence
          Length = 55400

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 251   tggtcaacaaaagcttggac 270
             ||||||||||||||||||||
Sbjct: 50750 tggtcaacaaaagcttggac 50731
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>dbj|AB034704.1| Rubrivivax gelatinosus photosynthetic gene cluster, complete cds,
             stain:IL144
          Length = 58996

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 291   cgccggccagcgccgcacgc 310
             ||||||||||||||||||||
Sbjct: 47513 cgccggccagcgccgcacgc 47494


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,213,261
Number of Sequences: 3902068
Number of extensions: 3213261
Number of successful extensions: 70301
Number of sequences better than 10.0: 56
Number of HSP's better than 10.0 without gapping: 56
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 69636
Number of HSP's gapped (non-prelim): 665
length of query: 366
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 344
effective length of database: 17,147,199,772
effective search space: 5898636721568
effective search space used: 5898636721568
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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