>PGBM_MOUSE (Q05793) Basement membrane-specific heparan sulfate proteoglycan core|
            protein precursor (HSPG) (Perlecan) (PLC)
          Length = 3707

 Score = 27.7 bits (60), Expect = 7.2
 Identities = 9/13 (69%), Positives = 10/13 (76%)
 Frame = +2

Query: 155  RAPTPWAHRVRGN 193
            RAP PW HR+ GN
Sbjct: 2570 RAPLPWQHRIEGN 2582

>YKVZ_BACSU (O31690) Putative HTH-type transcriptional regulator ykvZ|
          Length = 321

 Score = 27.3 bits (59), Expect = 9.3
 Identities = 11/21 (52%), Positives = 16/21 (76%)
 Frame = -2

Query: 136 QNIHSVSLSRSFTNVFSVVNP 74
           +NIH+V LS+ F+N+  VV P
Sbjct: 47  RNIHAVHLSKGFSNMIGVVLP 67


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 48,101,359
Number of Sequences: 219361
Number of extensions: 855175
Number of successful extensions: 1828
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 1799
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1828
length of database: 80,573,946
effective HSP length: 97
effective length of database: 59,295,929
effective search space used: 1423102296
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)