ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbart59e07 |
|---|---|
| Clone Library Name | barley_pub |
>ref|XM_959236.1| Neurospora crassa OR74A VALYL-TRNA SYNTHETASE, MITOCHONDRIAL PRECURSOR (VALINE--TRNA LIGASE) (VALRS) (NCU01965.1) partial mRNA Length = 3282 Score = 42.1 bits (21), Expect = 1.2 Identities = 21/21 (100%) Strand = Plus / Minus Query: 154 cttcggggcaggggcaccagg 174 ||||||||||||||||||||| Sbjct: 210 cttcggggcaggggcaccagg 190
>ref|XM_329154.1| Neurospora crassa OR74A VALYL-TRNA SYNTHETASE, MITOCHONDRIAL PRECURSOR (VALINE--TRNA LIGASE) (VALRS) (NCU01965.1) partial mRNA Length = 3282 Score = 42.1 bits (21), Expect = 1.2 Identities = 21/21 (100%) Strand = Plus / Minus Query: 154 cttcggggcaggggcaccagg 174 ||||||||||||||||||||| Sbjct: 210 cttcggggcaggggcaccagg 190
>emb|BX842630.1| Neurospora crassa DNA linkage group I BAC contig B13D15 Length = 127789 Score = 42.1 bits (21), Expect = 1.2 Identities = 21/21 (100%) Strand = Plus / Plus Query: 154 cttcggggcaggggcaccagg 174 ||||||||||||||||||||| Sbjct: 116975 cttcggggcaggggcaccagg 116995
>dbj|AK140146.1| Mus musculus adult male corpora quadrigemina cDNA, RIKEN full-length enriched library, clone:B230314J23 product:unclassifiable, full insert sequence Length = 4834 Score = 42.1 bits (21), Expect = 1.2 Identities = 21/21 (100%) Strand = Plus / Minus Query: 80 gattcataactaaaagcaaaa 100 ||||||||||||||||||||| Sbjct: 2476 gattcataactaaaagcaaaa 2456
>gb|AC151831.3| Mus musculus BAC clone RP24-81D24 from chromosome 14, complete sequence Length = 212749 Score = 42.1 bits (21), Expect = 1.2 Identities = 21/21 (100%) Strand = Plus / Minus Query: 80 gattcataactaaaagcaaaa 100 ||||||||||||||||||||| Sbjct: 156552 gattcataactaaaagcaaaa 156532
>gb|AC113611.3| Homo sapiens BAC clone RP11-421M20 from 4, complete sequence Length = 60597 Score = 42.1 bits (21), Expect = 1.2 Identities = 21/21 (100%) Strand = Plus / Minus Query: 40 cacacagactagggacaaaac 60 ||||||||||||||||||||| Sbjct: 57646 cacacagactagggacaaaac 57626
>emb|AL135747.4|CNS01DVE Human chromosome 14 DNA sequence BAC R-1023I22 of library RPCI-11 from chromosome 14 of Homo sapiens (Human), complete sequence Length = 173275 Score = 42.1 bits (21), Expect = 1.2 Identities = 21/21 (100%) Strand = Plus / Minus Query: 87 aactaaaagcaaaactgagca 107 ||||||||||||||||||||| Sbjct: 119689 aactaaaagcaaaactgagca 119669
>gb|M64703.1|NEUXXX N.crassa valyl-tRNA synthetase (cyt-20/un-3) gene Length = 4135 Score = 42.1 bits (21), Expect = 1.2 Identities = 21/21 (100%) Strand = Plus / Minus Query: 154 cttcggggcaggggcaccagg 174 ||||||||||||||||||||| Sbjct: 783 cttcggggcaggggcaccagg 763
>ref|XM_761429.1| Theileria parva strain Muguga chromosome 1 hypothetical protein (TP01_1001) partial mRNA Length = 2184 Score = 40.1 bits (20), Expect = 4.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 296 tgaataatcatgctggacgt 315 |||||||||||||||||||| Sbjct: 1797 tgaataatcatgctggacgt 1778
>gb|AF145593.1|NTCCAMK2 Nicotiana tabacum calcium/calmodulin-dependent protein kinase (CCaMK) gene, exons and complete cds Length = 1378 Score = 40.1 bits (20), Expect = 4.8 Identities = 23/24 (95%) Strand = Plus / Minus Query: 296 tgaataatcatgctggacgtgtgt 319 |||||||||||| ||||||||||| Sbjct: 590 tgaataatcatgttggacgtgtgt 567
>tpe|BN000728.1| TPA: TPA_exp: Canis familiaris col6a3 gene for collagen, type VI, alpha 3 and mlph gene for melanophilin Length = 212696 Score = 40.1 bits (20), Expect = 4.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 173 gggcaggccggcaggggcgg 192 |||||||||||||||||||| Sbjct: 203008 gggcaggccggcaggggcgg 202989
>emb|AL844544.9| Mouse DNA sequence from clone RP23-230B1 on chromosome 2, complete sequence Length = 156426 Score = 40.1 bits (20), Expect = 4.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 90 taaaagcaaaactgagcaaa 109 |||||||||||||||||||| Sbjct: 108589 taaaagcaaaactgagcaaa 108608
>emb|AL844531.6| Mouse DNA sequence from clone RP23-211J18 on chromosome 2, complete sequence Length = 181194 Score = 40.1 bits (20), Expect = 4.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 53 gacaaaactgagcacaaaac 72 |||||||||||||||||||| Sbjct: 175328 gacaaaactgagcacaaaac 175347 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 2,985,836 Number of Sequences: 3902068 Number of extensions: 2985836 Number of successful extensions: 55860 Number of sequences better than 10.0: 13 Number of HSP's better than 10.0 without gapping: 13 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 55843 Number of HSP's gapped (non-prelim): 17 length of query: 364 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 342 effective length of database: 17,147,199,772 effective search space: 5864342322024 effective search space used: 5864342322024 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
