ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
menu 
| Clone Name | rbart59e05 |
|---|---|
| Clone Library Name | barley_pub |
>DYI3_CHLRE (P27766) Dynein, 70 kDa intermediate chain, flagellar outer arm| (IC69) (IC70) Length = 567 Score = 30.0 bits (66), Expect = 1.5 Identities = 14/38 (36%), Positives = 17/38 (44%) Frame = -3 Query: 144 PICSYIWSISCPNMIMYPSLSMVPVGLCCLVKLRHVSN 31 P+ SYIW ++ PN P MVP C K N Sbjct: 195 PLSSYIWDVNNPNT---PEYEMVPTSQICCAKFNLKDN 229
>POLS_ONNVG (P22056) Structural polyprotein (p130) [Contains: Capsid protein| (EC 3.4.21.-) (Coat protein) (C); p62 (E3/E2); E3 protein (Spike glycoprotein E3); E2 envelope glycoprotein (Spike glycoprotein E2); 6K protein; E1 envelope glycoprotein (Spike g Length = 1247 Score = 29.3 bits (64), Expect = 2.6 Identities = 17/53 (32%), Positives = 24/53 (45%), Gaps = 4/53 (7%) Frame = -3 Query: 195 TVLYVYGWGEEIVNVLYPICSYIWSISCPNMIMYPS----LSMVPVGLCCLVK 49 T L V W ++IV + P S WS++ P M + + S P CC K Sbjct: 237 TALSVVTWNKDIVTKITPEGSVEWSLALPVMCLLANTTFPCSQPPCAPCCYEK 289
>RHG12_MOUSE (Q8C0D4) Rho-GTPase-activating protein 12| Length = 838 Score = 28.5 bits (62), Expect = 4.4 Identities = 16/37 (43%), Positives = 18/37 (48%), Gaps = 4/37 (10%) Frame = -1 Query: 305 ALPPWPASRGFGLHNYMEL----SGYCYYYFRTYDTR 207 ALPP P S ++ E SG CYYY RT R Sbjct: 253 ALPPLPGSPAIQVNGEWETHKDSSGRCYYYNRTTQER 289
>BRC4_DROME (Q24206) Broad-complex core-protein isoform 6| Length = 880 Score = 28.5 bits (62), Expect = 4.4 Identities = 18/62 (29%), Positives = 27/62 (43%), Gaps = 1/62 (1%) Frame = -2 Query: 259 TWNCRGTAITIFAPMIRV-APVYRSLCVWLGRRNRECALPYLFLHMVNFMPKHDYVSILK 83 T C G +I ++ +P +R L ++ C P + L VNFM H V + Sbjct: 35 TLACEGRSIKAHRVVLSACSPYFRELL-----KSTPCKHPVILLQDVNFMDLHALVEFIY 89 Query: 82 HG 77 HG Sbjct: 90 HG 91
>BRC1_DROME (Q01295) Broad-complex core-protein isoforms 1/2/3/4/5| Length = 727 Score = 28.5 bits (62), Expect = 4.4 Identities = 18/62 (29%), Positives = 27/62 (43%), Gaps = 1/62 (1%) Frame = -2 Query: 259 TWNCRGTAITIFAPMIRV-APVYRSLCVWLGRRNRECALPYLFLHMVNFMPKHDYVSILK 83 T C G +I ++ +P +R L ++ C P + L VNFM H V + Sbjct: 35 TLACEGRSIKAHRVVLSACSPYFRELL-----KSTPCKHPVILLQDVNFMDLHALVEFIY 89 Query: 82 HG 77 HG Sbjct: 90 HG 91
>GP101_HUMAN (Q96P66) Probable G-protein coupled receptor 101| Length = 508 Score = 28.1 bits (61), Expect = 5.8 Identities = 12/44 (27%), Positives = 23/44 (52%) Frame = -3 Query: 183 VYGWGEEIVNVLYPICSYIWSISCPNMIMYPSLSMVPVGLCCLV 52 +YGWG+ + +CS IW S P+ + +S + + L ++ Sbjct: 167 LYGWGQAAFDERNALCSMIWGAS-PSYTILSVVSFIVIPLIVMI 209
>POLS_CHIKN (Q5WQY5) Structural polyprotein (p130) [Contains: Capsid protein| (EC 3.4.21.-) (Coat protein) (C); p62 (E3/E2); E3 protein (Spike glycoprotein E3); E2 envelope glycoprotein (Spike glycoprotein E2); 6K protein; E1 envelope glycoprotein (Spike g Length = 1248 Score = 27.7 bits (60), Expect = 7.5 Identities = 16/53 (30%), Positives = 24/53 (45%), Gaps = 4/53 (7%) Frame = -3 Query: 195 TVLYVYGWGEEIVNVLYPICSYIWSISCPNMIMYPS----LSMVPVGLCCLVK 49 T L V W ++IV + P + WS++ P M + + S P CC K Sbjct: 238 TALSVVTWNKDIVTKITPEGAEEWSLAIPVMCLLANTTFPCSQPPCAPCCYEK 290
>ORCT4_HUMAN (Q9Y267) Organic-cation transporter-like 4 (Solute carrier family| 22 member 14) Length = 594 Score = 27.7 bits (60), Expect = 7.5 Identities = 11/30 (36%), Positives = 16/30 (53%) Frame = -3 Query: 93 PSLSMVPVGLCCLVKLRHVSNLW*IVVRRL 4 PS+ VP LCC+ L+ + W + V L Sbjct: 416 PSIMEVPARLCCIFLLQQIGRKWSLAVTLL 445
>SYL_CHLMU (Q9PKI4) Leucyl-tRNA synthetase (EC 6.1.1.4) (Leucine--tRNA ligase)| (LeuRS) Length = 819 Score = 27.7 bits (60), Expect = 7.5 Identities = 9/27 (33%), Positives = 15/27 (55%) Frame = -1 Query: 266 HNYMELSGYCYYYFRTYDTRRACLPFS 186 H + +G C+YY R D +C P++ Sbjct: 480 HTMPQWAGSCWYYLRFCDAHNSCAPWA 506
>STC_DROME (P40798) Protein shuttle craft| Length = 1106 Score = 27.7 bits (60), Expect = 7.5 Identities = 18/62 (29%), Positives = 24/62 (38%), Gaps = 9/62 (14%) Frame = -2 Query: 172 GRRNRECALPYLFLHMVNFMPKHDYVSILKHGPCWFML---------LSKTATCKQPVVN 20 G + C LP +H + P+H+ S PC L KT C QP + Sbjct: 774 GTKKPICKLPCSRIHPCDHPPQHNCHSGPTCPPCMIFTTKLCHGNHELRKTIPCSQPNFS 833 Query: 19 CG 14 CG Sbjct: 834 CG 835
>CADHO_XENLA (P33147) Neural-cadherin 2 precursor (N-cadherin 2)| Length = 906 Score = 27.3 bits (59), Expect = 9.8 Identities = 15/56 (26%), Positives = 26/56 (46%) Frame = -2 Query: 322 VRTRIGPCRHGRQAEDSGCITTWNCRGTAITIFAPMIRVAPVYRSLCVWLGRRNRE 155 +R ++ C HG + + I T G I I +I + + VW+ RR++E Sbjct: 697 LRVKVCSCEHGYCSTTAPIIGTGLGTGAIIAILLCIIILLTLVLMFVVWMKRRDKE 752
>FA11B_MOUSE (Q8R3R5) Protein FAM11B| Length = 350 Score = 27.3 bits (59), Expect = 9.8 Identities = 15/39 (38%), Positives = 21/39 (53%), Gaps = 2/39 (5%) Frame = -2 Query: 247 RGTA--ITIFAPMIRVAPVYRSLCVWLGRRNRECALPYL 137 RGT + +F P+ V+PV + CVW R +R L L Sbjct: 107 RGTHFWLLVFMPLFFVSPVSVAACVWGFRHDRSLELEIL 145
>FA11B_HUMAN (Q9H7F4) Protein FAM11B| Length = 350 Score = 27.3 bits (59), Expect = 9.8 Identities = 15/39 (38%), Positives = 21/39 (53%), Gaps = 2/39 (5%) Frame = -2 Query: 247 RGTA--ITIFAPMIRVAPVYRSLCVWLGRRNRECALPYL 137 RGT + +F P+ V+PV + CVW R +R L L Sbjct: 107 RGTHFWLLVFMPLFFVSPVSVAACVWGFRHDRSLELEIL 145 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 52,036,712 Number of Sequences: 219361 Number of extensions: 1031073 Number of successful extensions: 2227 Number of sequences better than 10.0: 13 Number of HSP's better than 10.0 without gapping: 2179 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 2227 length of database: 80,573,946 effective HSP length: 83 effective length of database: 62,366,983 effective search space used: 1496807592 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
