ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbart59e03
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1PT127_YEAST (P32606) Putative mitochondrial translation system c... 29 2.5
2TRPB2_METMA (Q8Q001) Tryptophan synthase beta chain 2 (EC 4.2.1.20) 28 4.3
3ERG6_PNECA (Q96WX4) Sterol 24-C-methyltransferase (EC 2.1.1.41) ... 28 7.4

>PT127_YEAST (P32606) Putative mitochondrial translation system component PET127|
          Length = 800

 Score = 29.3 bits (64), Expect = 2.5
 Identities = 14/52 (26%), Positives = 25/52 (48%)
 Frame = +3

Query: 165 KSTVRRCYRHENMHSATAKKQYPAKRTWQARRRTQPRVAPPRNGASVGSHAW 320
           K+ +++ YRH+     T    YP +RT+  RR    R   P +     S+++
Sbjct: 99  KTNIKKEYRHDKYLERTKVGTYPGRRTYPGRRTYPARRTYPASRTYSDSNSY 150



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>TRPB2_METMA (Q8Q001) Tryptophan synthase beta chain 2 (EC 4.2.1.20)|
          Length = 442

 Score = 28.5 bits (62), Expect = 4.3
 Identities = 15/37 (40%), Positives = 20/37 (54%)
 Frame = -2

Query: 231 DTASWPWPSACSHACNTFSLYFFFTLVCNVFI*RSHY 121
           +T +  W SA S ACN      +F L C V++ RS Y
Sbjct: 144 ETGAGQWGSALSLACN------YFDLECKVYMVRSSY 174



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>ERG6_PNECA (Q96WX4) Sterol 24-C-methyltransferase (EC 2.1.1.41)|
           (Delta(24)-sterol C-methyltransferase)
          Length = 377

 Score = 27.7 bits (60), Expect = 7.4
 Identities = 7/27 (25%), Positives = 17/27 (62%)
 Frame = +1

Query: 13  TEFYLFSWLTAYYFCTLKRNQRMEEIL 93
           T+FY + W T+++FC   +++   + +
Sbjct: 85  TDFYEYGWSTSFHFCRFAKDESFSQAI 111


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 50,982,718
Number of Sequences: 219361
Number of extensions: 961390
Number of successful extensions: 2057
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 2017
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2055
length of database: 80,573,946
effective HSP length: 87
effective length of database: 61,489,539
effective search space used: 1475748936
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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