ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbart59e02 |
|---|---|
| Clone Library Name | barley_pub |
>GUNX_CLOTM (P15329) Putative endoglucanase X (EC 3.2.1.4) (EGX)| (Endo-1,4-beta-glucanase) (Cellulase) (Fragment) Length = 224 Score = 31.6 bits (70), Expect = 0.50 Identities = 13/25 (52%), Positives = 15/25 (60%) Frame = -3 Query: 352 DPTTHWSWDGIHLTEAAYGHIARGW 278 D T SWDG+HL+E Y IA W Sbjct: 109 DRNTDISWDGLHLSEIGYTKIANIW 133
>EST_HEVBR (Q7Y1X1) Esterase precursor (EC 3.1.1.-) (Early nodule-specific| protein homolog) (Latex allergen Hev b 13) Length = 391 Score = 30.0 bits (66), Expect = 1.5 Identities = 14/36 (38%), Positives = 19/36 (52%) Frame = -3 Query: 355 ADPTTHWSWDGIHLTEAAYGHIARGWLYGPFADQPI 248 A P+ +WDG H TEAA + G F+D P+ Sbjct: 338 ACPSVRVNWDGAHYTEAANEYFFDQISTGAFSDPPV 373
>PROA_PSEPK (Q88DL4) Gamma-glutamyl phosphate reductase (GPR) (EC 1.2.1.41)| (Glutamate-5-semialdehyde dehydrogenase) (Glutamyl-gamma-semialdehyde dehydrogenase) (GSA dehydrogenase) Length = 423 Score = 29.6 bits (65), Expect = 1.9 Identities = 17/40 (42%), Positives = 23/40 (57%) Frame = +2 Query: 224 AERSQGLNNRLVCERAI*PTPGDMAISSLRQVNAVPAPVG 343 A R+ GL L+ A+ P D I+ LRQV ++P PVG Sbjct: 59 AGRASGLEPALLDRLALTPARIDGMITGLRQVASLPDPVG 98
>DHET_ACEAC (P18278) Alcohol dehydrogenase [acceptor] precursor (EC 1.1.99.8)| Length = 742 Score = 28.9 bits (63), Expect = 3.2 Identities = 13/35 (37%), Positives = 20/35 (57%) Frame = -3 Query: 163 VVLPYSPNGSYVYIFI*LNSLQVGYKGEIGGFQKH 59 + + YSP VYI + + GYK ++GGF+ H Sbjct: 434 MAMAYSPKTHLVYIPA--HQIPFGYKNQVGGFKPH 466
>LEF4_NPVOP (O10340) Late expression factor 4| Length = 457 Score = 28.5 bits (62), Expect = 4.2 Identities = 13/46 (28%), Positives = 25/46 (54%) Frame = -1 Query: 231 RSASAVAPVERRE*HTTKLEKGK*FFHIVPMVHTCIFSFD*IHCKW 94 RS++A+ P+ RRE T + + HI ++ T ++ D + K+ Sbjct: 77 RSSNALVPLVRRENRETAVPHDRVSRHIASLIETTVYKLDGVDVKF 122
>PROA_SYNEL (Q8DKU1) Gamma-glutamyl phosphate reductase (GPR) (EC 1.2.1.41)| (Glutamate-5-semialdehyde dehydrogenase) (Glutamyl-gamma-semialdehyde dehydrogenase) (GSA dehydrogenase) Length = 439 Score = 27.7 bits (60), Expect = 7.2 Identities = 15/48 (31%), Positives = 25/48 (52%) Frame = +2 Query: 203 STGATAEAERSQGLNNRLVCERAI*PTPGDMAISSLRQVNAVPAPVGR 346 + A E ++ LN L + P+ AI+ +RQV A+P P+G+ Sbjct: 57 ANAADCEQAKANQLNASLYARLELSPSKLAAAIAGVRQVAALPDPLGQ 104
>MAML3_HUMAN (Q96JK9) Mastermind-like protein 3 (Mam-3)| Length = 1133 Score = 27.7 bits (60), Expect = 7.2 Identities = 12/26 (46%), Positives = 15/26 (57%) Frame = +3 Query: 207 QVQQQKRNAHKD*TIGWSAKGPYSQP 284 Q QQQ++ H + T WS GP S P Sbjct: 498 QQQQQQQQQHSNQTSNWSPLGPPSSP 523
>PROA_PSEF5 (Q4K5F9) Gamma-glutamyl phosphate reductase (GPR) (EC 1.2.1.41)| (Glutamate-5-semialdehyde dehydrogenase) (Glutamyl-gamma-semialdehyde dehydrogenase) (GSA dehydrogenase) Length = 421 Score = 27.7 bits (60), Expect = 7.2 Identities = 15/38 (39%), Positives = 20/38 (52%) Frame = +2 Query: 230 RSQGLNNRLVCERAI*PTPGDMAISSLRQVNAVPAPVG 343 R+ GL L+ A+ P D I LRQV +P P+G Sbjct: 61 RANGLEPALLDRLALTPARIDEMIEGLRQVAKLPDPIG 98
>PROA_PSEAE (Q9HX20) Gamma-glutamyl phosphate reductase (GPR) (EC 1.2.1.41)| (Glutamate-5-semialdehyde dehydrogenase) (Glutamyl-gamma-semialdehyde dehydrogenase) (GSA dehydrogenase) Length = 421 Score = 27.7 bits (60), Expect = 7.2 Identities = 15/40 (37%), Positives = 21/40 (52%) Frame = +2 Query: 224 AERSQGLNNRLVCERAI*PTPGDMAISSLRQVNAVPAPVG 343 A R+ GL ++ A+ P D I LRQV +P P+G Sbjct: 59 AGRANGLEPAMLDRLALTPARIDDMIEGLRQVATLPDPIG 98
>HIPK4_RAT (Q4V793) Homeodomain-interacting protein kinase 4 (EC 2.7.11.1)| Length = 616 Score = 27.3 bits (59), Expect = 9.4 Identities = 23/63 (36%), Positives = 29/63 (46%), Gaps = 2/63 (3%) Frame = +3 Query: 84 PLYPTCNEFNQMKIYTYEPLGLYGRTTFPSPV**CAILDALQVQQQ--KRNAHKD*TIGW 257 PLYP NE++Q++ Y E GL P P +L A + KRN H D T W Sbjct: 213 PLYPGNNEYDQVR-YICETQGL------PKP----HLLHAARKAHHFFKRNPHPDATNPW 261 Query: 258 SAK 266 K Sbjct: 262 QLK 264
>Y1134_STAHJ (Q4L7D2) UPF0161 protein SH1134| Length = 78 Score = 27.3 bits (59), Expect = 9.4 Identities = 10/23 (43%), Positives = 13/23 (56%) Frame = +3 Query: 72 PPISPLYPTCNEFNQMKIYTYEP 140 PP YPTC+E+ + I Y P Sbjct: 22 PPTCRFYPTCSEYTREAIEVYGP 44
>CCHL_CANAL (P53700) Cytochrome c heme lyase (EC 4.4.1.17) (CCHL)| (Holocytochrome-C synthase) Length = 264 Score = 27.3 bits (59), Expect = 9.4 Identities = 17/53 (32%), Positives = 25/53 (47%), Gaps = 3/53 (5%) Frame = +1 Query: 1 RNHG---VHYILHLYHLTDKTNHAFGIPLFHLCTPLAMNSIK*KYTRMNHWDY 150 RN G V Y++ Y D + G+P F L T A++++ R HW Y Sbjct: 202 RNQGWKEVRYVIDYYGAPD--DEEAGMPAFMLDTRPALDNLTNARDRFTHWAY 252
>ACEA_PINTA (Q43097) Isocitrate lyase (EC 4.1.3.1) (Isocitrase) (Isocitratase)| (ICL) Length = 580 Score = 27.3 bits (59), Expect = 9.4 Identities = 13/34 (38%), Positives = 14/34 (41%), Gaps = 7/34 (20%) Frame = -3 Query: 337 WSWDGIHLTEAAY-------GHIARGWLYGPFAD 257 W WD E Y I RGW +GP AD Sbjct: 375 WDWDLPRTREGFYRFQGSVKAAIVRGWAFGPHAD 408 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 53,143,818 Number of Sequences: 219361 Number of extensions: 976889 Number of successful extensions: 2536 Number of sequences better than 10.0: 13 Number of HSP's better than 10.0 without gapping: 2495 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 2536 length of database: 80,573,946 effective HSP length: 94 effective length of database: 59,954,012 effective search space used: 1438896288 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
