ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbart59e02
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1gb|AY104407.1| Zea mays PCO114073 mRNA sequence 113 4e-22
2ref|XM_464842.1| Oryza sativa (japonica cultivar-group), mRNA 90 6e-15
3dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic D... 90 6e-15
4dbj|AP005511.3| Oryza sativa (japonica cultivar-group) genomic D... 90 6e-15
5dbj|AP004018.3| Oryza sativa (japonica cultivar-group) genomic D... 90 6e-15
6dbj|AK070671.1| Oryza sativa (japonica cultivar-group) cDNA clon... 90 6e-15
7dbj|AK061300.1| Oryza sativa (japonica cultivar-group) cDNA clon... 90 6e-15
8gb|AY108995.1| Zea mays PCO109727 mRNA sequence 68 2e-08
9dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic D... 58 2e-05
10dbj|AP004749.2| Oryza sativa (japonica cultivar-group) genomic D... 58 2e-05
11dbj|AK120456.1| Oryza sativa (japonica cultivar-group) cDNA clon... 58 2e-05
12dbj|AK059898.1| Oryza sativa (japonica cultivar-group) cDNA clon... 58 2e-05
13ref|NM_188437.1| Oryza sativa (japonica cultivar-group), predic... 52 0.001
14dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic D... 52 0.001
15dbj|AP003104.2| Oryza sativa (japonica cultivar-group) genomic D... 52 0.001
16dbj|AP001633.2| Oryza sativa (japonica cultivar-group) genomic D... 52 0.001
17dbj|AK104740.1| Oryza sativa (japonica cultivar-group) cDNA clon... 52 0.001
18dbj|AK065001.1| Oryza sativa (japonica cultivar-group) cDNA clon... 52 0.001
19dbj|AK060120.1| Oryza sativa (japonica cultivar-group) cDNA clon... 52 0.001
20emb|AL805903.12| Mouse DNA sequence from clone RP23-464N23 on ch... 44 0.30
21gb|AY104167.1| Zea mays PCO062696 mRNA sequence 42 1.2
22emb|BX936445.8| Zebrafish DNA sequence from clone DKEY-50O12 in ... 40 4.7
23gb|AC126010.13| Medicago truncatula clone mth2-20e4, complete se... 40 4.7
24emb|AL445469.4| Human DNA sequence from clone RP11-254N18 on chr... 40 4.7
25emb|AL354823.7| Human DNA sequence from clone RP11-452L13 on chr... 40 4.7
26emb|Z93771.1|NTNPP4 N.tabacum npp4 mRNA for protein phosphatase ... 40 4.7
27emb|AL627383.5| Zebrafish DNA sequence from clone RP71-1O18 in l... 40 4.7
28gb|AC093848.2| Homo sapiens BAC clone RP11-486G21 from 4, comple... 40 4.7
29gb|AC018923.21| Homo sapiens 12 BAC RP11-559C10 (Roswell Park Ca... 40 4.7
30emb|BX666062.6| Zebrafish DNA sequence from clone DKEY-99O18 in ... 40 4.7
31emb|BX511226.5| Zebrafish DNA sequence from clone DKEY-41K7 in l... 40 4.7
32emb|BX324215.14| Zebrafish DNA sequence from clone DKEY-42L16 in... 40 4.7
33emb|AL714005.17| Zebrafish DNA sequence from clone BUSM1-13F19 i... 40 4.7
34emb|BX000465.12| Zebrafish DNA sequence from clone DKEY-30A6 in ... 40 4.7 
>gb|AY104407.1| Zea mays PCO114073 mRNA sequence
          Length = 1726

 Score =  113 bits (57), Expect = 4e-22
 Identities = 96/109 (88%)
 Strand = Plus / Minus

                                                                        
Query: 249  atcggttggtctgcgaaagggccatatagccaacccctggcgatatggccataagcagcc 308
            ||||||||||| |||||||| || |||||||| ||  ||||||||||||  || ||||||
Sbjct: 1372 atcggttggtccgcgaaaggcccgtatagccagcctttggcgatatggcggtaggcagcc 1313

                                                             
Query: 309  tccgtcaagtgaatgccgtcccagctccagtgggtcgttggatcagcac 357
            ||||||| ||||||||||||||||||||| ||||| || ||||||||||
Sbjct: 1312 tccgtcaggtgaatgccgtcccagctccaatgggttgtcggatcagcac 1264



 Score = 52.0 bits (26), Expect = 0.001
 Identities = 76/90 (84%), Gaps = 2/90 (2%)
 Strand = Plus / Minus

                                                                        
Query: 82   cacctttgtaccccacttgc-aatgaattcaatcaaatgaaaatatacacgtatg-aacc 139
            ||||||||||||||  | || ||||||| |||||||||| | || |||| ||||| || |
Sbjct: 1543 cacctttgtacccccatggcaaatgaatacaatcaaatggagatgtacaagtatgcaagc 1484

                                          
Query: 140  attgggactatatggaagaactactttccc 169
            ||||| ||| ||||||||| ||||||||||
Sbjct: 1483 attggaactgtatggaagacctactttccc 1454
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>ref|XM_464842.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1149

 Score = 89.7 bits (45), Expect = 6e-15
 Identities = 90/105 (85%)
 Strand = Plus / Minus

                                                                        
Query: 249  atcggttggtctgcgaaagggccatatagccaacccctggcgatatggccataagcagcc 308
            ||||||||||| |||||||| ||||||| |||||| ||||| || || || ||||| |||
Sbjct: 1133 atcggttggtcagcgaaaggaccatatacccaacctctggcaatgtgaccgtaagccgcc 1074

                                                         
Query: 309  tccgtcaagtgaatgccgtcccagctccagtgggtcgttggatca 353
            || |||| ||||||||| ||||||||||| ||||| | |||||||
Sbjct: 1073 tctgtcaggtgaatgccatcccagctccaatgggttgatggatca 1029
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>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
               sequence
          Length = 35954743

 Score = 89.7 bits (45), Expect = 6e-15
 Identities = 90/105 (85%)
 Strand = Plus / Minus

                                                                           
Query: 249     atcggttggtctgcgaaagggccatatagccaacccctggcgatatggccataagcagcc 308
               ||||||||||| |||||||| ||||||| |||||| ||||| || || || ||||| |||
Sbjct: 8503788 atcggttggtcagcgaaaggaccatatacccaacctctggcaatgtgaccgtaagccgcc 8503729

                                                            
Query: 309     tccgtcaagtgaatgccgtcccagctccagtgggtcgttggatca 353
               || |||| ||||||||| ||||||||||| ||||| | |||||||
Sbjct: 8503728 tctgtcaggtgaatgccatcccagctccaatgggttgatggatca 8503684



 Score = 77.8 bits (39), Expect = 2e-11
 Identities = 88/103 (85%), Gaps = 1/103 (0%)
 Strand = Plus / Minus

                                                                           
Query: 74      ccctatttcacctttgtaccccacttgcaatgaattcaatcaaatgaaaatatacacgta 133
               ||||||| ||||||||||||  ||| |||||||||  |||  |||||||||||||| |||
Sbjct: 8503961 ccctattccacctttgtacctgact-gcaatgaatgtaatagaatgaaaatatacatgta 8503903

                                                          
Query: 134     tgaaccattgggactatatggaagaactactttcccttctcca 176
               || | | |||| || |||||||||||||||||||||| |||||
Sbjct: 8503902 tgcaaccttggaaccatatggaagaactactttccctgctcca 8503860
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>dbj|AP005511.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
              clone:OSJNBa0011N12
          Length = 158586

 Score = 89.7 bits (45), Expect = 6e-15
 Identities = 90/105 (85%)
 Strand = Plus / Minus

                                                                          
Query: 249    atcggttggtctgcgaaagggccatatagccaacccctggcgatatggccataagcagcc 308
              ||||||||||| |||||||| ||||||| |||||| ||||| || || || ||||| |||
Sbjct: 156638 atcggttggtcagcgaaaggaccatatacccaacctctggcaatgtgaccgtaagccgcc 156579

                                                           
Query: 309    tccgtcaagtgaatgccgtcccagctccagtgggtcgttggatca 353
              || |||| ||||||||| ||||||||||| ||||| | |||||||
Sbjct: 156578 tctgtcaggtgaatgccatcccagctccaatgggttgatggatca 156534



 Score = 77.8 bits (39), Expect = 2e-11
 Identities = 88/103 (85%), Gaps = 1/103 (0%)
 Strand = Plus / Minus

                                                                          
Query: 74     ccctatttcacctttgtaccccacttgcaatgaattcaatcaaatgaaaatatacacgta 133
              ||||||| ||||||||||||  ||| |||||||||  |||  |||||||||||||| |||
Sbjct: 156811 ccctattccacctttgtacctgact-gcaatgaatgtaatagaatgaaaatatacatgta 156753

                                                         
Query: 134    tgaaccattgggactatatggaagaactactttcccttctcca 176
              || | | |||| || |||||||||||||||||||||| |||||
Sbjct: 156752 tgcaaccttggaaccatatggaagaactactttccctgctcca 156710
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>dbj|AP004018.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
             clone:OJ1113_G05
          Length = 131445

 Score = 89.7 bits (45), Expect = 6e-15
 Identities = 90/105 (85%)
 Strand = Plus / Minus

                                                                         
Query: 249   atcggttggtctgcgaaagggccatatagccaacccctggcgatatggccataagcagcc 308
             ||||||||||| |||||||| ||||||| |||||| ||||| || || || ||||| |||
Sbjct: 53058 atcggttggtcagcgaaaggaccatatacccaacctctggcaatgtgaccgtaagccgcc 52999

                                                          
Query: 309   tccgtcaagtgaatgccgtcccagctccagtgggtcgttggatca 353
             || |||| ||||||||| ||||||||||| ||||| | |||||||
Sbjct: 52998 tctgtcaggtgaatgccatcccagctccaatgggttgatggatca 52954



 Score = 77.8 bits (39), Expect = 2e-11
 Identities = 88/103 (85%), Gaps = 1/103 (0%)
 Strand = Plus / Minus

                                                                         
Query: 74    ccctatttcacctttgtaccccacttgcaatgaattcaatcaaatgaaaatatacacgta 133
             ||||||| ||||||||||||  ||| |||||||||  |||  |||||||||||||| |||
Sbjct: 53231 ccctattccacctttgtacctgact-gcaatgaatgtaatagaatgaaaatatacatgta 53173

                                                        
Query: 134   tgaaccattgggactatatggaagaactactttcccttctcca 176
             || | | |||| || |||||||||||||||||||||| |||||
Sbjct: 53172 tgcaaccttggaaccatatggaagaactactttccctgctcca 53130
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>dbj|AK070671.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023056M20, full
            insert sequence
          Length = 3220

 Score = 89.7 bits (45), Expect = 6e-15
 Identities = 90/105 (85%)
 Strand = Plus / Minus

                                                                        
Query: 249  atcggttggtctgcgaaagggccatatagccaacccctggcgatatggccataagcagcc 308
            ||||||||||| |||||||| ||||||| |||||| ||||| || || || ||||| |||
Sbjct: 2934 atcggttggtcagcgaaaggaccatatacccaacctctggcaatgtgaccgtaagccgcc 2875

                                                         
Query: 309  tccgtcaagtgaatgccgtcccagctccagtgggtcgttggatca 353
            || |||| ||||||||| ||||||||||| ||||| | |||||||
Sbjct: 2874 tctgtcaggtgaatgccatcccagctccaatgggttgatggatca 2830



 Score = 77.8 bits (39), Expect = 2e-11
 Identities = 88/103 (85%), Gaps = 1/103 (0%)
 Strand = Plus / Minus

                                                                        
Query: 74   ccctatttcacctttgtaccccacttgcaatgaattcaatcaaatgaaaatatacacgta 133
            ||||||| ||||||||||||  ||| |||||||||  |||  |||||||||||||| |||
Sbjct: 3107 ccctattccacctttgtacctgact-gcaatgaatgtaatagaatgaaaatatacatgta 3049

                                                       
Query: 134  tgaaccattgggactatatggaagaactactttcccttctcca 176
            || | | |||| || |||||||||||||||||||||| |||||
Sbjct: 3048 tgcaaccttggaaccatatggaagaactactttccctgctcca 3006
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>dbj|AK061300.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-301-E12, full
           insert sequence
          Length = 1100

 Score = 89.7 bits (45), Expect = 6e-15
 Identities = 90/105 (85%)
 Strand = Plus / Minus

                                                                       
Query: 249 atcggttggtctgcgaaagggccatatagccaacccctggcgatatggccataagcagcc 308
           ||||||||||| |||||||| ||||||| |||||| ||||| || || || ||||| |||
Sbjct: 814 atcggttggtcagcgaaaggaccatatacccaacctctggcaatgtgaccgtaagccgcc 755

                                                        
Query: 309 tccgtcaagtgaatgccgtcccagctccagtgggtcgttggatca 353
           || |||| ||||||||| ||||||||||| ||||| | |||||||
Sbjct: 754 tctgtcaggtgaatgccatcccagctccaatgggttgatggatca 710



 Score = 77.8 bits (39), Expect = 2e-11
 Identities = 88/103 (85%), Gaps = 1/103 (0%)
 Strand = Plus / Minus

                                                                       
Query: 74  ccctatttcacctttgtaccccacttgcaatgaattcaatcaaatgaaaatatacacgta 133
           ||||||| ||||||||||||  ||| |||||||||  |||  |||||||||||||| |||
Sbjct: 987 ccctattccacctttgtacctgact-gcaatgaatgtaatagaatgaaaatatacatgta 929

                                                      
Query: 134 tgaaccattgggactatatggaagaactactttcccttctcca 176
           || | | |||| || |||||||||||||||||||||| |||||
Sbjct: 928 tgcaaccttggaaccatatggaagaactactttccctgctcca 886
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>gb|AY108995.1| Zea mays PCO109727 mRNA sequence
          Length = 847

 Score = 67.9 bits (34), Expect = 2e-08
 Identities = 58/66 (87%)
 Strand = Plus / Minus

                                                                       
Query: 276 agccaacccctggcgatatggccataagcagcctccgtcaagtgaatgccgtcccagctc 335
           ||||| ||||||||||| ||||| || || |||||||| | ||| |||||||||||||||
Sbjct: 353 agccagcccctggcgatgtggccgtaggcggcctccgtgaggtggatgccgtcccagctc 294

                 
Query: 336 cagtgg 341
           ||||||
Sbjct: 293 cagtgg 288
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>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete
                sequence
          Length = 30731886

 Score = 58.0 bits (29), Expect = 2e-05
 Identities = 47/53 (88%)
 Strand = Plus / Plus

                                                                     
Query: 288      gcgatatggccataagcagcctccgtcaagtgaatgccgtcccagctccagtg 340
                |||||||| ||||| || ||||| ||||||||||| || ||||||||||||||
Sbjct: 19491885 gcgatatgtccatatgcggcctctgtcaagtgaataccatcccagctccagtg 19491937
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>dbj|AP004749.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC
              clone:P0410C01
          Length = 138424

 Score = 58.0 bits (29), Expect = 2e-05
 Identities = 47/53 (88%)
 Strand = Plus / Plus

                                                                   
Query: 288    gcgatatggccataagcagcctccgtcaagtgaatgccgtcccagctccagtg 340
              |||||||| ||||| || ||||| ||||||||||| || ||||||||||||||
Sbjct: 110294 gcgatatgtccatatgcggcctctgtcaagtgaataccatcccagctccagtg 110346
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>dbj|AK120456.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013105I19, full
           insert sequence
          Length = 1263

 Score = 58.0 bits (29), Expect = 2e-05
 Identities = 47/53 (88%)
 Strand = Plus / Minus

                                                                
Query: 288 gcgatatggccataagcagcctccgtcaagtgaatgccgtcccagctccagtg 340
           |||||||| ||||| || ||||| ||||||||||| || ||||||||||||||
Sbjct: 418 gcgatatgtccatatgcggcctctgtcaagtgaataccatcccagctccagtg 366
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>dbj|AK059898.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-208-F09, full
            insert sequence
          Length = 1432

 Score = 58.0 bits (29), Expect = 2e-05
 Identities = 47/53 (88%)
 Strand = Plus / Minus

                                                                 
Query: 288  gcgatatggccataagcagcctccgtcaagtgaatgccgtcccagctccagtg 340
            |||||||| ||||| || ||||| ||||||||||| || ||||||||||||||
Sbjct: 1121 gcgatatgtccatatgcggcctctgtcaagtgaataccatcccagctccagtg 1069
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>ref|NM_188437.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 1119

 Score = 52.0 bits (26), Expect = 0.001
 Identities = 71/86 (82%)
 Strand = Plus / Minus

                                                                        
Query: 256  ggtctgcgaaagggccatatagccaacccctggcgatatggccataagcagcctccgtca 315
            |||| ||||| ||||| || ||||| ||| ||||||| ||||| || |  ||||| || |
Sbjct: 1090 ggtcggcgaacgggccgtagagccagcccttggcgatgtggccgtaggacgcctcggtga 1031

                                      
Query: 316  agtgaatgccgtcccagctccagtgg 341
             ||| |||||||||||||||||||||
Sbjct: 1030 ggtggatgccgtcccagctccagtgg 1005
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>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
               sequence
          Length = 43261740

 Score = 52.0 bits (26), Expect = 0.001
 Identities = 71/86 (82%)
 Strand = Plus / Minus

                                                                           
Query: 256     ggtctgcgaaagggccatatagccaacccctggcgatatggccataagcagcctccgtca 315
               |||| ||||| ||||| || ||||| ||| ||||||| ||||| || |  ||||| || |
Sbjct: 6282218 ggtcggcgaacgggccgtagagccagcccttggcgatgtggccgtaggacgcctcggtga 6282159

                                         
Query: 316     agtgaatgccgtcccagctccagtgg 341
                ||| |||||||||||||||||||||
Sbjct: 6282158 ggtggatgccgtcccagctccagtgg 6282133
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>dbj|AP003104.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC
              clone:OSJNBa0038J17
          Length = 180186

 Score = 52.0 bits (26), Expect = 0.001
 Identities = 71/86 (82%)
 Strand = Plus / Minus

                                                                          
Query: 256    ggtctgcgaaagggccatatagccaacccctggcgatatggccataagcagcctccgtca 315
              |||| ||||| ||||| || ||||| ||| ||||||| ||||| || |  ||||| || |
Sbjct: 144416 ggtcggcgaacgggccgtagagccagcccttggcgatgtggccgtaggacgcctcggtga 144357

                                        
Query: 316    agtgaatgccgtcccagctccagtgg 341
               ||| |||||||||||||||||||||
Sbjct: 144356 ggtggatgccgtcccagctccagtgg 144331
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>dbj|AP001633.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
             clone:P0515G01
          Length = 175072

 Score = 52.0 bits (26), Expect = 0.001
 Identities = 71/86 (82%)
 Strand = Plus / Minus

                                                                         
Query: 256   ggtctgcgaaagggccatatagccaacccctggcgatatggccataagcagcctccgtca 315
             |||| ||||| ||||| || ||||| ||| ||||||| ||||| || |  ||||| || |
Sbjct: 53284 ggtcggcgaacgggccgtagagccagcccttggcgatgtggccgtaggacgcctcggtga 53225

                                       
Query: 316   agtgaatgccgtcccagctccagtgg 341
              ||| |||||||||||||||||||||
Sbjct: 53224 ggtggatgccgtcccagctccagtgg 53199
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>dbj|AK104740.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-038-D10, full
            insert sequence
          Length = 1356

 Score = 52.0 bits (26), Expect = 0.001
 Identities = 71/86 (82%)
 Strand = Plus / Minus

                                                                        
Query: 256  ggtctgcgaaagggccatatagccaacccctggcgatatggccataagcagcctccgtca 315
            |||| ||||| ||||| || ||||| ||| ||||||| ||||| || |  ||||| || |
Sbjct: 1014 ggtcggcgaacgggccgtagagccagcccttggcgatgtggccgtaggacgcctcggtga 955

                                      
Query: 316  agtgaatgccgtcccagctccagtgg 341
             ||| |||||||||||||||||||||
Sbjct: 954  ggtggatgccgtcccagctccagtgg 929
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>dbj|AK065001.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013001E04, full
            insert sequence
          Length = 1583

 Score = 52.0 bits (26), Expect = 0.001
 Identities = 71/86 (82%)
 Strand = Plus / Minus

                                                                        
Query: 256  ggtctgcgaaagggccatatagccaacccctggcgatatggccataagcagcctccgtca 315
            |||| ||||| ||||| || ||||| ||| ||||||| ||||| || |  ||||| || |
Sbjct: 1242 ggtcggcgaacgggccgtagagccagcccttggcgatgtggccgtaggacgcctcggtga 1183

                                      
Query: 316  agtgaatgccgtcccagctccagtgg 341
             ||| |||||||||||||||||||||
Sbjct: 1182 ggtggatgccgtcccagctccagtgg 1157
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>dbj|AK060120.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-308-F04, full
            insert sequence
          Length = 1356

 Score = 52.0 bits (26), Expect = 0.001
 Identities = 71/86 (82%)
 Strand = Plus / Minus

                                                                        
Query: 256  ggtctgcgaaagggccatatagccaacccctggcgatatggccataagcagcctccgtca 315
            |||| ||||| ||||| || ||||| ||| ||||||| ||||| || |  ||||| || |
Sbjct: 1014 ggtcggcgaacgggccgtagagccagcccttggcgatgtggccgtaggacgcctcggtga 955

                                      
Query: 316  agtgaatgccgtcccagctccagtgg 341
             ||| |||||||||||||||||||||
Sbjct: 954  ggtggatgccgtcccagctccagtgg 929
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>emb|AL805903.12| Mouse DNA sequence from clone RP23-464N23 on chromosome 4, complete
             sequence
          Length = 136895

 Score = 44.1 bits (22), Expect = 0.30
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                   
Query: 14    ttcattacattttacatttata 35
             ||||||||||||||||||||||
Sbjct: 99829 ttcattacattttacatttata 99808
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>gb|AY104167.1| Zea mays PCO062696 mRNA sequence
          Length = 1460

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                         
Query: 306  gcctccgtcaagtgaatgccgtcccagct 334
            |||||||||| ||| ||||||||||||||
Sbjct: 1092 gcctccgtcaggtggatgccgtcccagct 1064
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>emb|BX936445.8| Zebrafish DNA sequence from clone DKEY-50O12 in linkage group 6,
             complete sequence
          Length = 163720

 Score = 40.1 bits (20), Expect = 4.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 15    tcattacattttacatttat 34
             ||||||||||||||||||||
Sbjct: 45290 tcattacattttacatttat 45309
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>gb|AC126010.13| Medicago truncatula clone mth2-20e4, complete sequence
          Length = 113964

 Score = 40.1 bits (20), Expect = 4.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 16     cattacattttacatttata 35
              ||||||||||||||||||||
Sbjct: 108917 cattacattttacatttata 108936
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>emb|AL445469.4| Human DNA sequence from clone RP11-254N18 on chromosome 1 Contains part
             of the ACBD6 gene for acyl-Coenzyme A binding domain
             containing 6 and a voltage-dependent anion channel 1
             (VDAC1) pseudogene, complete sequence
          Length = 129504

 Score = 40.1 bits (20), Expect = 4.7
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 42    cacagacaaaacaaatcatgcttt 65
             |||||||||||||||||| |||||
Sbjct: 62648 cacagacaaaacaaatcaggcttt 62671
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>emb|AL354823.7| Human DNA sequence from clone RP11-452L13 on chromosome 13, complete
             sequence
          Length = 101091

 Score = 40.1 bits (20), Expect = 4.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 13    gttcattacattttacattt 32
             ||||||||||||||||||||
Sbjct: 59178 gttcattacattttacattt 59197
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>emb|Z93771.1|NTNPP4 N.tabacum npp4 mRNA for protein phosphatase type 2A
          Length = 1708

 Score = 40.1 bits (20), Expect = 4.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 109 tcaatcaaatgaaaatatac 128
           ||||||||||||||||||||
Sbjct: 215 tcaatcaaatgaaaatatac 196
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>emb|AL627383.5| Zebrafish DNA sequence from clone RP71-1O18 in linkage group 14
             Contains a novel gene similar to GRIA3 (ionotrophic
             glutamate receptor AMPA 3), a novel gene similar to THOC2
             (THO complex 2) and two CpG islands, complete sequence
          Length = 166395

 Score = 40.1 bits (20), Expect = 4.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 16    cattacattttacatttata 35
             ||||||||||||||||||||
Sbjct: 93488 cattacattttacatttata 93469
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>gb|AC093848.2| Homo sapiens BAC clone RP11-486G21 from 4, complete sequence
          Length = 175064

 Score = 40.1 bits (20), Expect = 4.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 103    atgaattcaatcaaatgaaa 122
              ||||||||||||||||||||
Sbjct: 162110 atgaattcaatcaaatgaaa 162091
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>gb|AC018923.21| Homo sapiens 12 BAC RP11-559C10 (Roswell Park Cancer Institute Human
             BAC Library) complete sequence
          Length = 152802

 Score = 40.1 bits (20), Expect = 4.7
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 18    ttacattttacatttataccacct 41
             |||||||||||||||| |||||||
Sbjct: 96920 ttacattttacatttaaaccacct 96943
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>emb|BX666062.6| Zebrafish DNA sequence from clone DKEY-99O18 in linkage group 2,
             complete sequence
          Length = 233488

 Score = 40.1 bits (20), Expect = 4.7
 Identities = 27/28 (96%), Gaps = 1/28 (3%)
 Strand = Plus / Plus

                                         
Query: 98    ttgcaatgaattcaat-caaatgaaaat 124
             |||||||||||||||| |||||||||||
Sbjct: 58104 ttgcaatgaattcaatgcaaatgaaaat 58131
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>emb|BX511226.5| Zebrafish DNA sequence from clone DKEY-41K7 in linkage group 1, complete
              sequence
          Length = 252757

 Score = 40.1 bits (20), Expect = 4.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 16     cattacattttacatttata 35
              ||||||||||||||||||||
Sbjct: 242261 cattacattttacatttata 242242
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>emb|BX324215.14| Zebrafish DNA sequence from clone DKEY-42L16 in linkage group 22,
              complete sequence
          Length = 207877

 Score = 40.1 bits (20), Expect = 4.7
 Identities = 27/28 (96%), Gaps = 1/28 (3%)
 Strand = Plus / Plus

                                          
Query: 98     ttgcaatgaattcaat-caaatgaaaat 124
              |||||||||||||||| |||||||||||
Sbjct: 198895 ttgcaatgaattcaatgcaaatgaaaat 198922
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>emb|AL714005.17| Zebrafish DNA sequence from clone BUSM1-13F19 in linkage group 9,
             complete sequence
          Length = 104829

 Score = 40.1 bits (20), Expect = 4.7
 Identities = 27/28 (96%), Gaps = 1/28 (3%)
 Strand = Plus / Minus

                                         
Query: 98    ttgcaatgaattcaat-caaatgaaaat 124
             |||||||||||||||| |||||||||||
Sbjct: 25471 ttgcaatgaattcaatgcaaatgaaaat 25444
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>emb|BX000465.12| Zebrafish DNA sequence from clone DKEY-30A6 in linkage group 22, complete
              sequence
          Length = 214999

 Score = 40.1 bits (20), Expect = 4.7
 Identities = 27/28 (96%), Gaps = 1/28 (3%)
 Strand = Plus / Minus

                                          
Query: 98     ttgcaatgaattcaat-caaatgaaaat 124
              |||||||||||||||| |||||||||||
Sbjct: 148811 ttgcaatgaattcaatgcaaatgaaaat 148784


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,314,248
Number of Sequences: 3902068
Number of extensions: 3314248
Number of successful extensions: 70696
Number of sequences better than 10.0: 34
Number of HSP's better than 10.0 without gapping: 30
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 70571
Number of HSP's gapped (non-prelim): 124
length of query: 357
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 335
effective length of database: 17,147,199,772
effective search space: 5744311923620
effective search space used: 5744311923620
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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