ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbart59e01
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1ref|XM_470396.1| Oryza sativa (japonica cultivar-group), mRNA 121 2e-24
2gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 121 2e-24
3gb|AC092852.6| Oryza sativa chromosome 3 BAC OSJNBa0032G11 genom... 121 2e-24
4dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic D... 121 2e-24
5dbj|AK105971.1| Oryza sativa (japonica cultivar-group) cDNA clon... 121 2e-24
6gb|AY108516.1| Zea mays PCO134507 mRNA sequence 105 1e-19
7emb|AL626787.9| Human DNA sequence from clone RP11-375H19 on chr... 42 1.2
8gb|AC009318.11| Homo sapiens 12p BAC RP11-996F15 (Roswell Park C... 42 1.2
9gb|AC064801.10| Homo sapiens chromosome 18, clone RP11-120K19, c... 42 1.2
10gb|AC008829.7| Homo sapiens chromosome 5 clone CTD-2140K22, comp... 42 1.2
11gb|AC012410.10| Homo sapiens chromosome 8, clone RP11-354A3, com... 42 1.2
12gb|AC016080.5|AC016080 Homo sapiens, clone RP11-23N14, complete ... 42 1.2
13dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic D... 42 1.2
14gb|AC023787.8| Homo sapiens BAC clone RP11-546M8 from 2, complet... 42 1.2
15gb|AC007680.2| Homo sapiens BAC clone RP11-354L14 from 2, comple... 42 1.2
16gb|AC068048.6| Homo sapiens BAC clone RP11-263D19 from 2, comple... 42 1.2
17gb|AC123835.4| Mus musculus BAC clone RP23-365J20 from chromosom... 42 1.2
18dbj|AB012242.1| Arabidopsis thaliana genomic DNA, chromosome 5, ... 42 1.2
19dbj|AK109548.1| Oryza sativa (japonica cultivar-group) cDNA clon... 42 1.2
20dbj|AK071962.1| Oryza sativa (japonica cultivar-group) cDNA clon... 42 1.2
21gb|DP000016.1| Pan troglodytes target 1 genomic scaffold 40 4.9
22gb|AC120002.24| Mus musculus chromosome 12, clone RP24-147D14, c... 40 4.9
23gb|AC087729.2| Pan troglodytes clone RP43-143F17, complete sequence 40 4.9
24gb|AC147673.3| Pan troglodytes BAC clone CH251-13F15 from Y, com... 40 4.9
25gb|AC124453.3| Mus musculus BAC clone RP24-225A16 from chromosom... 40 4.9
26gb|AC153600.8| Mus musculus 6 BAC RP23-380C10 (Roswell Park Canc... 40 4.9
27gb|AC106873.3| Homo sapiens BAC clone RP11-374M7 from 7, complet... 40 4.9
28gb|AC146247.3| Pan troglodytes BAC clone RP43-27N23 from 7, comp... 40 4.9
29gb|AC125467.4| Mus musculus BAC clone RP24-91P24 from chromosome... 40 4.9
30emb|Z81086.1|CEF53B6 Caenorhabditis elegans Cosmid F53B6, comple... 40 4.9
31emb|Z68134.1|CET27A8 Caenorhabditis elegans Cosmid T27A8, comple... 40 4.9
32gb|AC145883.2| Pan troglodytes BAC clone RP43-20G17 from 7, comp... 40 4.9
33gb|AC096562.1| Homo sapiens BAC clone RP11-261E4 from 7, complet... 40 4.9
34ref|XM_674281.1| Plasmodium berghei strain ANKA hypothetical pro... 40 4.9
35gb|AC142297.1| Pan troglodytes BAC clone RP43-98C12 from 7, comp... 40 4.9
36gb|AC139192.1| Pan troglodytes BAC clone RP43-44N16 from Y, comp... 40 4.9
37gb|AC139194.1| Pan troglodytes BAC clone RP43-164C2 from Y, comp... 40 4.9
38gb|AC153015.4| Mus musculus BAC clone RP23-200I3 from chromosome... 40 4.9
39emb|AL606843.16| Human DNA sequence from clone RP11-94F13 on chr... 40 4.9
40emb|AL512404.15| Human DNA sequence from clone RP11-328C7 on chr... 40 4.9
41emb|AL356295.9| Human DNA sequence from clone RP11-768P11 on chr... 40 4.9
42gb|AC087215.5| Papio anubis clone RP41-455I14, complete sequence 40 4.9
43emb|AL136147.10| Human DNA sequence from clone RP5-896L10 on chr... 40 4.9
44gb|DQ442394.1| Striga asiatica clone St536 calmodulin-binding pr... 40 4.9
45emb|BX321859.1| Nitrosomonas europaea ATCC 19718, complete genom... 40 4.9
46gb|AF364582.1|F364580S03 Mus musculus C1-tetrahydrofolate syntha... 40 4.9
47gb|AC099544.2| Homo sapiens chromosome 3 clone RP11-600G19, comp... 40 4.9
48gb|AC116362.3| Homo sapiens chromosome 5 clone RP11-756H20, comp... 40 4.9
49emb|AL512589.4| Mouse DNA sequence from clone RP23-431C3 on chro... 40 4.9
50dbj|BS000627.2| Pan troglodytes chromosome Y clone: PTB-087E03, ... 40 4.9
51dbj|BS000536.1| Pan troglodytes chromosome Y clone:PTB-100K06, c... 40 4.9
52gb|DP000054.1| Pan troglodytes chromosome Y, partial sequence 40 4.9
53dbj|AK093276.1| Homo sapiens cDNA FLJ35957 fis, clone TESTI2012387 40 4.9
54gb|AC166601.4| Nomascus leucogenys leucogenys clone CH271-401M10... 40 4.9
55gb|AC149894.2| Xenopus tropicalis clone ISB-266O23, complete seq... 40 4.9
56gb|AC150443.2| Medicago truncatula chromosome 7 BAC clone mth2-7... 40 4.9
57gb|DP000005.1| Macaca mulatta target 1 genomic scaffold 40 4.9
58gb|AC005082.3| Homo sapiens BAC clone CTA-271G13 from 7, complet... 40 4.9
59gb|AC020698.4| Homo sapiens BAC clone RP11-45F23 from 4, complet... 40 4.9
60gb|DP000025.1| Gorilla gorilla gorilla target 1 genomic scaffold 40 4.9
61gb|DP000026.1| Pongo pygmaeus target 1 genomic scaffold 40 4.9
62gb|AC130184.4| Macaca mulatta clone CH250-513J21, complete sequence 40 4.9
63dbj|AP005579.3| Oryza sativa (japonica cultivar-group) genomic D... 40 4.9
64dbj|AP005420.3| Oryza sativa (japonica cultivar-group) genomic D... 40 4.9
65emb|BX511010.5| Zebrafish DNA sequence from clone CH211-79L20 in... 40 4.9
66dbj|AK098704.1| Homo sapiens cDNA FLJ25838 fis, clone TST08555 40 4.9
67dbj|AK057873.1| Homo sapiens cDNA FLJ25144 fis, clone CBR07272 40 4.9
68dbj|AK100679.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 4.9
69emb|AL935180.9| Zebrafish DNA sequence from clone CH211-227I1, c... 40 4.9
70gb|AC007759.1|AC007759 Homo sapiens chromosome 19, cosmid R27714... 40 4.9
71gb|AC156348.3| Colobus guereza clone CH272-110A23, complete sequ... 40 4.9
72emb|AL669901.26| Mouse DNA sequence from clone RP23-35N5 on chro... 40 4.9 
>ref|XM_470396.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1344

 Score =  121 bits (61), Expect = 2e-24
 Identities = 115/133 (86%)
 Strand = Plus / Minus

                                                                        
Query: 233  gtggagctccactggctggccttctcgaagccgttgcgaccgtagtagtagtcctccatg 292
            ||||||||||| |||| ||||||||||||||| || |  || |||||||| |||||||||
Sbjct: 1133 gtggagctccaatggcgggccttctcgaagccattcctgccatagtagtaatcctccatg 1074

                                                                        
Query: 293  gcctgctggatctgggcacgcgagttcatgacgaatggcccctgctgcaccactggctcg 352
            ||||||||||||| ||| || | |||||| ||||| || || ||||||||||| ||||||
Sbjct: 1073 gcctgctggatctcggcgcgggtgttcatcacgaaggggccatgctgcaccacgggctcg 1014

                         
Query: 353  ttcagcggctgcc 365
            || ||||||||||
Sbjct: 1013 ttgagcggctgcc 1001
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>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score =  121 bits (61), Expect = 2e-24
 Identities = 115/133 (86%)
 Strand = Plus / Plus

                                                                            
Query: 233      gtggagctccactggctggccttctcgaagccgttgcgaccgtagtagtagtcctccatg 292
                ||||||||||| |||| ||||||||||||||| || |  || |||||||| |||||||||
Sbjct: 35220575 gtggagctccaatggcgggccttctcgaagccattcctgccatagtagtaatcctccatg 35220634

                                                                            
Query: 293      gcctgctggatctgggcacgcgagttcatgacgaatggcccctgctgcaccactggctcg 352
                ||||||||||||| ||| || | |||||| ||||| || || ||||||||||| ||||||
Sbjct: 35220635 gcctgctggatctcggcgcgggtgttcatcacgaaggggccatgctgcaccacgggctcg 35220694

                             
Query: 353      ttcagcggctgcc 365
                || ||||||||||
Sbjct: 35220695 ttgagcggctgcc 35220707
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>gb|AC092852.6| Oryza sativa chromosome 3 BAC OSJNBa0032G11 genomic sequence, complete
             sequence
          Length = 156606

 Score =  121 bits (61), Expect = 2e-24
 Identities = 115/133 (86%)
 Strand = Plus / Plus

                                                                         
Query: 233   gtggagctccactggctggccttctcgaagccgttgcgaccgtagtagtagtcctccatg 292
             ||||||||||| |||| ||||||||||||||| || |  || |||||||| |||||||||
Sbjct: 99336 gtggagctccaatggcgggccttctcgaagccattcctgccatagtagtaatcctccatg 99395

                                                                         
Query: 293   gcctgctggatctgggcacgcgagttcatgacgaatggcccctgctgcaccactggctcg 352
             ||||||||||||| ||| || | |||||| ||||| || || ||||||||||| ||||||
Sbjct: 99396 gcctgctggatctcggcgcgggtgttcatcacgaaggggccatgctgcaccacgggctcg 99455

                          
Query: 353   ttcagcggctgcc 365
             || ||||||||||
Sbjct: 99456 ttgagcggctgcc 99468
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>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
                sequence
          Length = 36192742

 Score =  121 bits (61), Expect = 2e-24
 Identities = 115/133 (86%)
 Strand = Plus / Plus

                                                                            
Query: 233      gtggagctccactggctggccttctcgaagccgttgcgaccgtagtagtagtcctccatg 292
                ||||||||||| |||| ||||||||||||||| || |  || |||||||| |||||||||
Sbjct: 35310647 gtggagctccaatggcgggccttctcgaagccattcctgccatagtagtaatcctccatg 35310706

                                                                            
Query: 293      gcctgctggatctgggcacgcgagttcatgacgaatggcccctgctgcaccactggctcg 352
                ||||||||||||| ||| || | |||||| ||||| || || ||||||||||| ||||||
Sbjct: 35310707 gcctgctggatctcggcgcgggtgttcatcacgaaggggccatgctgcaccacgggctcg 35310766

                             
Query: 353      ttcagcggctgcc 365
                || ||||||||||
Sbjct: 35310767 ttgagcggctgcc 35310779
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>dbj|AK105971.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-205-F02, full
            insert sequence
          Length = 1344

 Score =  121 bits (61), Expect = 2e-24
 Identities = 115/133 (86%)
 Strand = Plus / Minus

                                                                        
Query: 233  gtggagctccactggctggccttctcgaagccgttgcgaccgtagtagtagtcctccatg 292
            ||||||||||| |||| ||||||||||||||| || |  || |||||||| |||||||||
Sbjct: 1133 gtggagctccaatggcgggccttctcgaagccattcctgccatagtagtaatcctccatg 1074

                                                                        
Query: 293  gcctgctggatctgggcacgcgagttcatgacgaatggcccctgctgcaccactggctcg 352
            ||||||||||||| ||| || | |||||| ||||| || || ||||||||||| ||||||
Sbjct: 1073 gcctgctggatctcggcgcgggtgttcatcacgaaggggccatgctgcaccacgggctcg 1014

                         
Query: 353  ttcagcggctgcc 365
            || ||||||||||
Sbjct: 1013 ttgagcggctgcc 1001
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>gb|AY108516.1| Zea mays PCO134507 mRNA sequence
          Length = 772

 Score =  105 bits (53), Expect = 1e-19
 Identities = 101/117 (86%)
 Strand = Plus / Minus

                                                                       
Query: 235 ggagctccactggctggccttctcgaagccgttgcgaccgtagtagtagtcctccatggc 294
           |||||||||||||| |||| |||||||||||||    |||||| ||||||| ||||||||
Sbjct: 626 ggagctccactggccggccctctcgaagccgttcttgccgtaggagtagtcttccatggc 567

                                                                    
Query: 295 ctgctggatctgggcacgcgagttcatgacgaatggcccctgctgcaccactggctc 351
           |||||| |||| |||  |||||||||||||||| || || ||||||||||| |||||
Sbjct: 566 ctgctgtatctcggcgtgcgagttcatgacgaagggtccgtgctgcaccacgggctc 510
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>emb|AL626787.9| Human DNA sequence from clone RP11-375H19 on chromosome 1 Contains the
             3' end of a novel gene, complete sequence
          Length = 71885

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 331   cccctgctgcaccactggctc 351
             |||||||||||||||||||||
Sbjct: 43972 cccctgctgcaccactggctc 43952
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>gb|AC009318.11| Homo sapiens 12p BAC RP11-996F15 (Roswell Park Cancer Institute Human BAC
              Library) complete sequence
          Length = 203417

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 78     taaaagaaatcatagaaaaca 98
              |||||||||||||||||||||
Sbjct: 167760 taaaagaaatcatagaaaaca 167780
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>gb|AC064801.10| Homo sapiens chromosome 18, clone RP11-120K19, complete sequence
          Length = 167843

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                      
Query: 30    cttattacacacttttattgtatca 54
             ||||||||||||| |||||||||||
Sbjct: 85075 cttattacacactgttattgtatca 85051
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>gb|AC008829.7| Homo sapiens chromosome 5 clone CTD-2140K22, complete sequence
          Length = 159145

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 109   ctacattctgcacaaaggcat 129
             |||||||||||||||||||||
Sbjct: 80055 ctacattctgcacaaaggcat 80075
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>gb|AC012410.10| Homo sapiens chromosome 8, clone RP11-354A3, complete sequence
          Length = 220715

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 143   caatgcaatttcccttccctt 163
             |||||||||||||||||||||
Sbjct: 70895 caatgcaatttcccttccctt 70875
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>gb|AC016080.5|AC016080 Homo sapiens, clone RP11-23N14, complete sequence
          Length = 176921

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 143    caatgcaatttcccttccctt 163
              |||||||||||||||||||||
Sbjct: 128898 caatgcaatttcccttccctt 128918
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>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete
                sequence
          Length = 22696651

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 33/37 (89%)
 Strand = Plus / Minus

                                                     
Query: 316      gttcatgacgaatggcccctgctgcaccactggctcg 352
                |||||||||||| |||||| ||||| |||| ||||||
Sbjct: 18540823 gttcatgacgaagggccccagctgcgccacgggctcg 18540787



 Score = 40.1 bits (20), Expect = 4.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 275      tagtagtagtcctccatggc 294
                ||||||||||||||||||||
Sbjct: 15237921 tagtagtagtcctccatggc 15237902
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>gb|AC023787.8| Homo sapiens BAC clone RP11-546M8 from 2, complete sequence
          Length = 144620

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 42    ttttattgtatcagattcttt 62
             |||||||||||||||||||||
Sbjct: 26543 ttttattgtatcagattcttt 26523
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>gb|AC007680.2| Homo sapiens BAC clone RP11-354L14 from 2, complete sequence
          Length = 146333

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 76    aataaaagaaatcatagaaaa 96
             |||||||||||||||||||||
Sbjct: 20021 aataaaagaaatcatagaaaa 20001
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>gb|AC068048.6| Homo sapiens BAC clone RP11-263D19 from 2, complete sequence
          Length = 101713

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                      
Query: 76    aataaaagaaatcatagaaaacaaa 100
             |||||||||||| ||||||||||||
Sbjct: 70330 aataaaagaaataatagaaaacaaa 70354
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>gb|AC123835.4| Mus musculus BAC clone RP23-365J20 from chromosome 9, complete sequence
          Length = 219799

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                           
Query: 73     agtaataaaagaaatcatagaaaacaaat 101
              ||||| |||||||||||||||||| ||||
Sbjct: 129154 agtaagaaaagaaatcatagaaaataaat 129126
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>dbj|AB012242.1| Arabidopsis thaliana genomic DNA, chromosome 5, TAC clone:K24G6
          Length = 78973

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                      
Query: 76    aataaaagaaatcatagaaaacaaa 100
             ||||||| |||||||||||||||||
Sbjct: 53686 aataaaataaatcatagaaaacaaa 53710
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>dbj|AK109548.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-120-F07, full
            insert sequence
          Length = 1489

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 33/37 (89%)
 Strand = Plus / Minus

                                                 
Query: 316  gttcatgacgaatggcccctgctgcaccactggctcg 352
            |||||||||||| |||||| ||||| |||| ||||||
Sbjct: 1072 gttcatgacgaagggccccagctgcgccacgggctcg 1036
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>dbj|AK071962.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013078C12, full
            insert sequence
          Length = 1371

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 33/37 (89%)
 Strand = Plus / Minus

                                                 
Query: 316  gttcatgacgaatggcccctgctgcaccactggctcg 352
            |||||||||||| |||||| ||||| |||| ||||||
Sbjct: 1063 gttcatgacgaagggccccagctgcgccacgggctcg 1027
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>gb|DP000016.1| Pan troglodytes target 1 genomic scaffold
          Length = 1623484

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 24     tttctccttattacacactt 43
              ||||||||||||||||||||
Sbjct: 818950 tttctccttattacacactt 818969
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>gb|AC120002.24| Mus musculus chromosome 12, clone RP24-147D14, complete sequence
          Length = 179305

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 58     tctttcctataaagcagtaataaa 81
              ||||||||||||||| ||||||||
Sbjct: 118739 tctttcctataaagctgtaataaa 118716
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>gb|AC087729.2| Pan troglodytes clone RP43-143F17, complete sequence
          Length = 208928

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 24     tttctccttattacacactt 43
              ||||||||||||||||||||
Sbjct: 120391 tttctccttattacacactt 120410
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>gb|AC147673.3| Pan troglodytes BAC clone CH251-13F15 from Y, complete sequence
          Length = 164583

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 78    taaaagaaatcatagaaaac 97
             ||||||||||||||||||||
Sbjct: 34971 taaaagaaatcatagaaaac 34990
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>gb|AC124453.3| Mus musculus BAC clone RP24-225A16 from chromosome 12, complete
            sequence
          Length = 184665

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 58   tctttcctataaagcagtaataaa 81
            ||||||||||||||| ||||||||
Sbjct: 3393 tctttcctataaagctgtaataaa 3370
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>gb|AC153600.8| Mus musculus 6 BAC RP23-380C10 (Roswell Park Cancer Institute (C57BL/6J
              Female) Mouse BAC Library) complete sequence
          Length = 194848

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 79     aaaagaaatcatagaaaaca 98
              ||||||||||||||||||||
Sbjct: 143396 aaaagaaatcatagaaaaca 143377
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>gb|AC106873.3| Homo sapiens BAC clone RP11-374M7 from 7, complete sequence
          Length = 99596

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 24    tttctccttattacacactt 43
             ||||||||||||||||||||
Sbjct: 17048 tttctccttattacacactt 17067
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>gb|AC146247.3| Pan troglodytes BAC clone RP43-27N23 from 7, complete sequence
          Length = 157530

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 29/32 (90%)
 Strand = Plus / Plus

                                             
Query: 64    ctataaagcagtaataaaagaaatcatagaaa 95
             ||||||| || |||||||| ||||||||||||
Sbjct: 27458 ctataaaacactaataaaacaaatcatagaaa 27489
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>gb|AC125467.4| Mus musculus BAC clone RP24-91P24 from chromosome 8, complete sequence
          Length = 200304

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 79     aaaagaaatcatagaaaaca 98
              ||||||||||||||||||||
Sbjct: 128860 aaaagaaatcatagaaaaca 128879
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>emb|Z81086.1|CEF53B6 Caenorhabditis elegans Cosmid F53B6, complete sequence
          Length = 32412

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 68    aaagcagtaataaaagaaat 87
             ||||||||||||||||||||
Sbjct: 25932 aaagcagtaataaaagaaat 25913



 Score = 40.1 bits (20), Expect = 4.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 68    aaagcagtaataaaagaaat 87
             ||||||||||||||||||||
Sbjct: 22594 aaagcagtaataaaagaaat 22613
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>emb|Z68134.1|CET27A8 Caenorhabditis elegans Cosmid T27A8, complete sequence
          Length = 28039

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 68    aaagcagtaataaaagaaat 87
             ||||||||||||||||||||
Sbjct: 17041 aaagcagtaataaaagaaat 17060
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>gb|AC145883.2| Pan troglodytes BAC clone RP43-20G17 from 7, complete sequence
          Length = 221255

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 78     taaaagaaatcatagaaaacaaat 101
              ||||||||||||||||||| ||||
Sbjct: 169585 taaaagaaatcatagaaaataaat 169562
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>gb|AC096562.1| Homo sapiens BAC clone RP11-261E4 from 7, complete sequence
          Length = 138224

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 29/32 (90%)
 Strand = Plus / Plus

                                             
Query: 64    ctataaagcagtaataaaagaaatcatagaaa 95
             ||||||| || |||||||| ||||||||||||
Sbjct: 25560 ctataaaacactaataaaacaaatcatagaaa 25591
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>ref|XM_674281.1| Plasmodium berghei strain ANKA hypothetical protein (PB000106.03.0)
            partial mRNA
          Length = 6147

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 165  ccaatgttttggacgacaat 184
            ||||||||||||||||||||
Sbjct: 1892 ccaatgttttggacgacaat 1911
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>gb|AC142297.1| Pan troglodytes BAC clone RP43-98C12 from 7, complete sequence
          Length = 137928

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 24   tttctccttattacacactt 43
            ||||||||||||||||||||
Sbjct: 4843 tttctccttattacacactt 4824
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>gb|AC139192.1| Pan troglodytes BAC clone RP43-44N16 from Y, complete sequence
          Length = 149965

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 78     taaaagaaatcatagaaaac 97
              ||||||||||||||||||||
Sbjct: 129620 taaaagaaatcatagaaaac 129601
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>gb|AC139194.1| Pan troglodytes BAC clone RP43-164C2 from Y, complete sequence
          Length = 182587

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 78    taaaagaaatcatagaaaac 97
             ||||||||||||||||||||
Sbjct: 99422 taaaagaaatcatagaaaac 99403
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>gb|AC153015.4| Mus musculus BAC clone RP23-200I3 from chromosome 8, complete sequence
          Length = 232038

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 79     aaaagaaatcatagaaaaca 98
              ||||||||||||||||||||
Sbjct: 174253 aaaagaaatcatagaaaaca 174234
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>emb|AL606843.16| Human DNA sequence from clone RP11-94F13 on chromosome 1 Contains a
             proteasome (prosome, macropain) 26S subunit ATPase 1
             (PSMC10 pseudogene, complete sequence
          Length = 96028

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 77    ataaaagaaatcatagaaaa 96
             ||||||||||||||||||||
Sbjct: 77574 ataaaagaaatcatagaaaa 77593
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>emb|AL512404.15| Human DNA sequence from clone RP11-328C7 on chromosome 6, complete
             sequence
          Length = 40204

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 64    ctataaagcagtaataaaagaaat 87
             |||||||||||| |||||||||||
Sbjct: 27954 ctataaagcagtgataaaagaaat 27977
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>emb|AL356295.9| Human DNA sequence from clone RP11-768P11 on chromosome 13, complete
             sequence
          Length = 134347

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 13    tgattactaattttctcctt 32
             ||||||||||||||||||||
Sbjct: 56898 tgattactaattttctcctt 56917
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>gb|AC087215.5| Papio anubis clone RP41-455I14, complete sequence
          Length = 68430

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 24    tttctccttattacacactt 43
             ||||||||||||||||||||
Sbjct: 56124 tttctccttattacacactt 56143
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>emb|AL136147.10| Human DNA sequence from clone RP5-896L10 on chromosome 1 Contains the
             3' end of a novel gene (FLJ38225) and the 5' end of the
             gene for plasticity related 1 (PRG1), complete sequence
          Length = 151139

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                         
Query: 25    ttctccttattacacacttttattgtat 52
             |||||||||||| ||||||| |||||||
Sbjct: 35697 ttctccttattatacactttcattgtat 35670
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>gb|DQ442394.1| Striga asiatica clone St536 calmodulin-binding protein mRNA,
           partial cds
          Length = 302

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 41/48 (85%)
 Strand = Plus / Minus

                                                           
Query: 314 gagttcatgacgaatggcccctgctgcaccactggctcgttcagcggc 361
           |||||||| || || |||||  ||||||| || |||||||||||||||
Sbjct: 220 gagttcatcacaaaaggcccgcgctgcacaacgggctcgttcagcggc 173
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>emb|BX321859.1| Nitrosomonas europaea ATCC 19718, complete genome; segment 4/10
          Length = 316050

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 294    cctgctggatctgggcacgc 313
              ||||||||||||||||||||
Sbjct: 248317 cctgctggatctgggcacgc 248336
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>gb|AF364582.1|F364580S03 Mus musculus C1-tetrahydrofolate synthase (Dcs) gene, exons 3 through
            8
          Length = 6390

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 58   tctttcctataaagcagtaataaa 81
            ||||||||||||||| ||||||||
Sbjct: 2946 tctttcctataaagctgtaataaa 2923
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>gb|AC099544.2| Homo sapiens chromosome 3 clone RP11-600G19, complete sequence
          Length = 184019

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 81    aagaaatcatagaaaacaaa 100
             ||||||||||||||||||||
Sbjct: 97833 aagaaatcatagaaaacaaa 97814
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>gb|AC116362.3| Homo sapiens chromosome 5 clone RP11-756H20, complete sequence
          Length = 178530

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 80    aaagaaatcatagaaaacaaatac 103
             |||||||||||||| |||||||||
Sbjct: 76136 aaagaaatcatagacaacaaatac 76159
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>emb|AL512589.4| Mouse DNA sequence from clone RP23-431C3 on chromosome 2, complete
              sequence
          Length = 170352

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 76     aataaaagaaatcatagaaaacaa 99
              ||||||||| ||||||||||||||
Sbjct: 103655 aataaaagagatcatagaaaacaa 103678
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>dbj|BS000627.2| Pan troglodytes chromosome Y clone: PTB-087E03, complete sequence
          Length = 203922

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 78     taaaagaaatcatagaaaac 97
              ||||||||||||||||||||
Sbjct: 162575 taaaagaaatcatagaaaac 162556
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>dbj|BS000536.1| Pan troglodytes chromosome Y clone:PTB-100K06, complete sequences
          Length = 204391

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 78     taaaagaaatcatagaaaac 97
              ||||||||||||||||||||
Sbjct: 188087 taaaagaaatcatagaaaac 188106
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>gb|DP000054.1| Pan troglodytes chromosome Y, partial sequence
          Length = 23952694

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 78       taaaagaaatcatagaaaac 97
                ||||||||||||||||||||
Sbjct: 21077086 taaaagaaatcatagaaaac 21077105
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>dbj|AK093276.1| Homo sapiens cDNA FLJ35957 fis, clone TESTI2012387
          Length = 1984

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 78  taaaagaaatcatagaaaacaaat 101
           ||||||||||||||||||| ||||
Sbjct: 751 taaaagaaatcatagaaaataaat 774
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>gb|AC166601.4| Nomascus leucogenys leucogenys clone CH271-401M10, complete sequence
          Length = 184404

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 24     tttctccttattacacactt 43
              ||||||||||||||||||||
Sbjct: 104680 tttctccttattacacactt 104699
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>gb|AC149894.2| Xenopus tropicalis clone ISB-266O23, complete sequence
          Length = 76775

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 82    agaaatcatagaaaacaaat 101
             ||||||||||||||||||||
Sbjct: 12354 agaaatcatagaaaacaaat 12335
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>gb|AC150443.2| Medicago truncatula chromosome 7 BAC clone mth2-71o19, complete
             sequence
          Length = 132097

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 80    aaagaaatcatagaaaacaa 99
             ||||||||||||||||||||
Sbjct: 45152 aaagaaatcatagaaaacaa 45133
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>gb|DP000005.1| Macaca mulatta target 1 genomic scaffold
          Length = 1678549

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 24     tttctccttattacacactt 43
              ||||||||||||||||||||
Sbjct: 734126 tttctccttattacacactt 734145
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>gb|AC005082.3| Homo sapiens BAC clone CTA-271G13 from 7, complete sequence
          Length = 169739

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 78    taaaagaaatcatagaaaacaaat 101
             ||||||||||||||||||| ||||
Sbjct: 43339 taaaagaaatcatagaaaataaat 43362
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>gb|AC020698.4| Homo sapiens BAC clone RP11-45F23 from 4, complete sequence
          Length = 148418

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 72    cagtaataaaagaaatcatagaaa 95
             ||||| ||||||||||||||||||
Sbjct: 66231 cagtagtaaaagaaatcatagaaa 66254
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>gb|DP000025.1| Gorilla gorilla gorilla target 1 genomic scaffold
          Length = 1787293

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 24     tttctccttattacacactt 43
              ||||||||||||||||||||
Sbjct: 737360 tttctccttattacacactt 737379
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>gb|DP000026.1| Pongo pygmaeus target 1 genomic scaffold
          Length = 1819346

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 24     tttctccttattacacactt 43
              ||||||||||||||||||||
Sbjct: 705429 tttctccttattacacactt 705448
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>gb|AC130184.4| Macaca mulatta clone CH250-513J21, complete sequence
          Length = 160850

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 24     tttctccttattacacactt 43
              ||||||||||||||||||||
Sbjct: 133781 tttctccttattacacactt 133800
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>dbj|AP005579.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, BAC
              clone:OJ1740_D06
          Length = 187410

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 275    tagtagtagtcctccatggc 294
              ||||||||||||||||||||
Sbjct: 131897 tagtagtagtcctccatggc 131878
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>dbj|AP005420.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, PAC
             clone:P0418B08
          Length = 165909

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 275   tagtagtagtcctccatggc 294
             ||||||||||||||||||||
Sbjct: 17110 tagtagtagtcctccatggc 17091
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>emb|BX511010.5| Zebrafish DNA sequence from clone CH211-79L20 in linkage group 16,
            complete sequence
          Length = 156317

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 7    aaataatgattactaatttt 26
            ||||||||||||||||||||
Sbjct: 6932 aaataatgattactaatttt 6951
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>dbj|AK098704.1| Homo sapiens cDNA FLJ25838 fis, clone TST08555
          Length = 1493

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 78  taaaagaaatcatagaaaacaaat 101
           ||||||||||||||||||| ||||
Sbjct: 260 taaaagaaatcatagaaaataaat 283
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>dbj|AK057873.1| Homo sapiens cDNA FLJ25144 fis, clone CBR07272
          Length = 2000

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 78  taaaagaaatcatagaaaacaaat 101
           ||||||||||||||||||| ||||
Sbjct: 767 taaaagaaatcatagaaaataaat 790
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>dbj|AK100679.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023113H15, full
           insert sequence
          Length = 2514

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 275 tagtagtagtcctccatggc 294
           ||||||||||||||||||||
Sbjct: 9   tagtagtagtcctccatggc 28
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>emb|AL935180.9| Zebrafish DNA sequence from clone CH211-227I1, complete sequence
          Length = 159007

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 75    taataaaagaaatcatagaa 94
             ||||||||||||||||||||
Sbjct: 86465 taataaaagaaatcatagaa 86484
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>gb|AC007759.1|AC007759 Homo sapiens chromosome 19, cosmid R27714, complete sequence
          Length = 40331

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 64    ctataaagcagtaataaaagaaat 87
             |||||||||| |||||||||||||
Sbjct: 19077 ctataaagcattaataaaagaaat 19054
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>gb|AC156348.3| Colobus guereza clone CH272-110A23, complete sequence
          Length = 115353

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 24    tttctccttattacacactt 43
             ||||||||||||||||||||
Sbjct: 59127 tttctccttattacacactt 59146
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>emb|AL669901.26| Mouse DNA sequence from clone RP23-35N5 on chromosome X, complete
             sequence
          Length = 226126

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 28    tccttattacacacttttattgta 51
             |||||||||||||| |||||||||
Sbjct: 40781 tccttattacacacatttattgta 40758


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 4,170,575
Number of Sequences: 3902068
Number of extensions: 4170575
Number of successful extensions: 174947
Number of sequences better than 10.0: 72
Number of HSP's better than 10.0 without gapping: 72
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 174629
Number of HSP's gapped (non-prelim): 317
length of query: 365
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 343
effective length of database: 17,147,199,772
effective search space: 5881489521796
effective search space used: 5881489521796
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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