ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbart59d12 |
|---|---|
| Clone Library Name | barley_pub |
>RS3A_ORYSA (P49397) 40S ribosomal protein S3a (CYC07 protein)| Length = 261 Score = 80.1 bits (196), Expect = 1e-15 Identities = 42/53 (79%), Positives = 46/53 (86%), Gaps = 1/53 (1%) Frame = -3 Query: 369 YVRKVKILKAPKFDLGKLMEVHGDY-KEDVGVKLDRPDGDEVIPGAEEVAAAE 214 +VRKVKILKAPKFDLGKLMEVHGDY KED+G KLDRP DE + G +EVAAAE Sbjct: 210 FVRKVKILKAPKFDLGKLMEVHGDYAKEDIGTKLDRPAEDEAMAG-QEVAAAE 261
>RS3A_HELAN (P49198) 40S ribosomal protein S3a| Length = 259 Score = 77.8 bits (190), Expect = 6e-15 Identities = 38/51 (74%), Positives = 42/51 (82%) Frame = -3 Query: 369 YVRKVKILKAPKFDLGKLMEVHGDYKEDVGVKLDRPDGDEVIPGAEEVAAA 217 ++RKVKILKAPKFD+GKLMEVHGDY EDVGVKLDRP +E P A EV A Sbjct: 210 FIRKVKILKAPKFDIGKLMEVHGDYSEDVGVKLDRP-AEEAAPEATEVIGA 259
>RS3A_CATRO (P33444) 40S ribosomal protein S3a (CYC07 protein)| Length = 259 Score = 73.9 bits (180), Expect = 9e-14 Identities = 34/50 (68%), Positives = 39/50 (78%) Frame = -3 Query: 369 YVRKVKILKAPKFDLGKLMEVHGDYKEDVGVKLDRPDGDEVIPGAEEVAA 220 ++RKVKILKAPKFDLGKLMEVHGDY ED+G KLDRP + V E + A Sbjct: 210 FIRKVKILKAPKFDLGKLMEVHGDYNEDIGTKLDRPAEEAVAEPTEVIGA 259
>RS3A_ARATH (Q42262) 40S ribosomal protein S3a| Length = 261 Score = 70.1 bits (170), Expect = 1e-12 Identities = 34/52 (65%), Positives = 41/52 (78%), Gaps = 1/52 (1%) Frame = -3 Query: 369 YVRKVKILKAPKFDLGKLMEVHGDY-KEDVGVKLDRPDGDEVIPGAEEVAAA 217 ++RKVKILKAPKFDLGKLMEVHGDY EDVGVK+DRP + ++ E+ A Sbjct: 210 FIRKVKILKAPKFDLGKLMEVHGDYTAEDVGVKVDRPADETMVEEPTEIIGA 261
>RS3A_BRARA (P49396) 40S ribosomal protein S3a (S phase-specific protein| BIS289) Length = 261 Score = 68.6 bits (166), Expect = 4e-12 Identities = 36/52 (69%), Positives = 41/52 (78%), Gaps = 1/52 (1%) Frame = -3 Query: 369 YVRKVKILKAPKFDLGKLMEVHGDY-KEDVGVKLDRPDGDEVIPGAEEVAAA 217 ++RKVKILKAPKFDL KLMEVHGDY EDVGVK+DRP DEV+ E+ A Sbjct: 211 FIRKVKILKAPKFDLRKLMEVHGDYTAEDVGVKVDRP-ADEVVEEPTEIIGA 261
>RS3A_TORRU (Q9XEG7) 40S ribosomal protein S3a| Length = 247 Score = 58.9 bits (141), Expect = 3e-09 Identities = 26/33 (78%), Positives = 30/33 (90%) Frame = -3 Query: 369 YVRKVKILKAPKFDLGKLMEVHGDYKEDVGVKL 271 ++RKVKILKAPKFDL KLMEVHGDY E+VG K+ Sbjct: 208 FIRKVKILKAPKFDLMKLMEVHGDYNEEVGAKI 240
>RS3A_TETNG (Q4T8S6) 40S ribosomal protein S3a| Length = 265 Score = 51.2 bits (121), Expect = 6e-07 Identities = 26/49 (53%), Positives = 33/49 (67%), Gaps = 9/49 (18%) Frame = -3 Query: 369 YVRKVKILKAPKFDLGKLMEVHGD---------YKEDVGVKLDRPDGDE 250 YVRKVK+LK PKF+LGKLME+HG+ +D G K++R DG E Sbjct: 210 YVRKVKMLKKPKFELGKLMELHGEGGAGTAAKATGDDTGAKVERADGYE 258
>RS3A_ORYLA (O73813) 40S ribosomal protein S3a (V-fos transformation effector| protein) Length = 265 Score = 51.2 bits (121), Expect = 6e-07 Identities = 26/49 (53%), Positives = 33/49 (67%), Gaps = 9/49 (18%) Frame = -3 Query: 369 YVRKVKILKAPKFDLGKLMEVHGD---------YKEDVGVKLDRPDGDE 250 YVRKVK+LK PKF+LGKLME+HG+ +D G K++R DG E Sbjct: 210 YVRKVKMLKKPKFELGKLMELHGEGGAGGAAKASGDDTGAKVERADGYE 258
>RS3A_BRARE (Q6PBY1) 40S ribosomal protein S3a| Length = 266 Score = 50.4 bits (119), Expect = 1e-06 Identities = 26/50 (52%), Positives = 33/50 (66%), Gaps = 10/50 (20%) Frame = -3 Query: 369 YVRKVKILKAPKFDLGKLMEVHGD----------YKEDVGVKLDRPDGDE 250 YVRKVK+LK PKF+LGKLME+HG+ + D G K++R DG E Sbjct: 210 YVRKVKMLKKPKFELGKLMELHGEGGSTSAAAKPAEGDTGAKVERADGYE 259
>RS3A_XENTR (Q642T2) 40S ribosomal protein S3a| Length = 263 Score = 50.4 bits (119), Expect = 1e-06 Identities = 25/47 (53%), Positives = 33/47 (70%), Gaps = 7/47 (14%) Frame = -3 Query: 369 YVRKVKILKAPKFDLGKLMEVHGD-------YKEDVGVKLDRPDGDE 250 YVRKVK+LK PKF+LGKLME+HG+ ++ G K++R DG E Sbjct: 210 YVRKVKMLKKPKFELGKLMELHGEGGGAGKPAGDETGAKVERADGYE 256
>RS3A_XENLA (Q801S3) 40S ribosomal protein S3a| Length = 263 Score = 50.4 bits (119), Expect = 1e-06 Identities = 25/47 (53%), Positives = 33/47 (70%), Gaps = 7/47 (14%) Frame = -3 Query: 369 YVRKVKILKAPKFDLGKLMEVHGD-------YKEDVGVKLDRPDGDE 250 YVRKVK+LK PKF+LGKLME+HG+ ++ G K++R DG E Sbjct: 210 YVRKVKMLKKPKFELGKLMELHGEGGGTGKPAGDETGAKVERADGYE 256
>RS3A_OPHHA (Q98TX2) 40S ribosomal protein S3a| Length = 263 Score = 50.4 bits (119), Expect = 1e-06 Identities = 25/47 (53%), Positives = 33/47 (70%), Gaps = 7/47 (14%) Frame = -3 Query: 369 YVRKVKILKAPKFDLGKLMEVHGD-------YKEDVGVKLDRPDGDE 250 YVRKVK+LK PKF+LGKLME+HG+ ++ G K++R DG E Sbjct: 210 YVRKVKMLKKPKFELGKLMELHGEGGGSGKPSGDETGAKVERADGYE 256
>RS3A_EIMTE (O43999) 40S ribosomal protein S3a (EtS3a)| Length = 263 Score = 50.4 bits (119), Expect = 1e-06 Identities = 25/47 (53%), Positives = 33/47 (70%), Gaps = 7/47 (14%) Frame = -3 Query: 369 YVRKVKILKAPKFDLGKLMEVHGD-------YKEDVGVKLDRPDGDE 250 YVRKVK+LK PKF+LGKLME+HG+ ++ G K++R DG E Sbjct: 210 YVRKVKMLKKPKFELGKLMELHGEGGGAGKPSGDEAGAKVERADGYE 256
>RS3A_FELCA (P61246) 40S ribosomal protein S3a (Fragment)| Length = 260 Score = 49.3 bits (116), Expect = 2e-06 Identities = 24/47 (51%), Positives = 33/47 (70%), Gaps = 7/47 (14%) Frame = -3 Query: 369 YVRKVKILKAPKFDLGKLMEVHGDYK-------EDVGVKLDRPDGDE 250 +VRKVK+LK PKF+LGKLME+HG+ ++ G K++R DG E Sbjct: 207 FVRKVKMLKKPKFELGKLMELHGEGSSSGKATGDETGAKVERADGYE 253
>RS3A_MACFA (Q4R4Z6) 40S ribosomal protein S3a| Length = 263 Score = 49.3 bits (116), Expect = 2e-06 Identities = 24/47 (51%), Positives = 33/47 (70%), Gaps = 7/47 (14%) Frame = -3 Query: 369 YVRKVKILKAPKFDLGKLMEVHGDYK-------EDVGVKLDRPDGDE 250 +VRKVK+LK PKF+LGKLME+HG+ ++ G K++R DG E Sbjct: 210 FVRKVKMLKKPKFELGKLMELHGEGSSSGKATGDETGAKVERADGYE 256
>RS3A_HUMAN (P61247) 40S ribosomal protein S3a| Length = 263 Score = 49.3 bits (116), Expect = 2e-06 Identities = 24/47 (51%), Positives = 33/47 (70%), Gaps = 7/47 (14%) Frame = -3 Query: 369 YVRKVKILKAPKFDLGKLMEVHGDYK-------EDVGVKLDRPDGDE 250 +VRKVK+LK PKF+LGKLME+HG+ ++ G K++R DG E Sbjct: 210 FVRKVKMLKKPKFELGKLMELHGEGSSSGKATGDETGAKVERADGYE 256
>RS3A_GECJA (Q6DV02) 40S ribosomal protein S3a| Length = 263 Score = 49.3 bits (116), Expect = 2e-06 Identities = 24/47 (51%), Positives = 33/47 (70%), Gaps = 7/47 (14%) Frame = -3 Query: 369 YVRKVKILKAPKFDLGKLMEVHGDYK-------EDVGVKLDRPDGDE 250 +VRKVK+LK PKF+LGKLME+HG+ ++ G K++R DG E Sbjct: 210 FVRKVKMLKKPKFELGKLMELHGEGSSSGKATGDETGAKVERADGYE 256
>RS3A_BOVIN (Q56JV9) 40S ribosomal protein S3a| Length = 263 Score = 49.3 bits (116), Expect = 2e-06 Identities = 24/47 (51%), Positives = 33/47 (70%), Gaps = 7/47 (14%) Frame = -3 Query: 369 YVRKVKILKAPKFDLGKLMEVHGDYK-------EDVGVKLDRPDGDE 250 +VRKVK+LK PKF+LGKLME+HG+ ++ G K++R DG E Sbjct: 210 FVRKVKMLKKPKFELGKLMELHGEGSSSGKATGDETGAKVERADGYE 256
>RS3A_RAT (P49242) 40S ribosomal protein S3a (V-fos transformation effector| protein) [Contains: 40S ribosomal protein S3b] Length = 263 Score = 48.9 bits (115), Expect = 3e-06 Identities = 24/47 (51%), Positives = 33/47 (70%), Gaps = 7/47 (14%) Frame = -3 Query: 369 YVRKVKILKAPKFDLGKLMEVHGD-------YKEDVGVKLDRPDGDE 250 +VRKVK+LK PKF+LGKLME+HG+ ++ G K++R DG E Sbjct: 210 FVRKVKMLKKPKFELGKLMELHGEGGSSGKTTGDETGAKVERADGYE 256
>RS3A_MOUSE (P97351) 40S ribosomal protein S3a| Length = 263 Score = 48.9 bits (115), Expect = 3e-06 Identities = 24/47 (51%), Positives = 33/47 (70%), Gaps = 7/47 (14%) Frame = -3 Query: 369 YVRKVKILKAPKFDLGKLMEVHGD-------YKEDVGVKLDRPDGDE 250 +VRKVK+LK PKF+LGKLME+HG+ ++ G K++R DG E Sbjct: 210 FVRKVKMLKKPKFELGKLMELHGEGGSSGKAAGDETGAKVERADGYE 256
>RS3A_DROME (P55830) 40S ribosomal protein S3a (C3 protein)| Length = 267 Score = 46.6 bits (109), Expect = 1e-05 Identities = 22/48 (45%), Positives = 30/48 (62%), Gaps = 8/48 (16%) Frame = -3 Query: 369 YVRKVKILKAPKFDLGKLMEVHGD--------YKEDVGVKLDRPDGDE 250 Y+RKVK+LK P+FD+ KL+E+HGD G +DRP+G E Sbjct: 213 YIRKVKVLKKPRFDVSKLLELHGDGGGKSVEAVVSSEGAVIDRPEGYE 260
>RS3A_APLCA (P49395) 40S ribosomal protein S3a (Lysine-rich protein KRP-A)| Length = 264 Score = 45.4 bits (106), Expect = 3e-05 Identities = 23/47 (48%), Positives = 30/47 (63%), Gaps = 8/47 (17%) Frame = -3 Query: 366 VRKVKILKAPKFDLGKLMEVHGD--------YKEDVGVKLDRPDGDE 250 + KVK+LK PKFD+GKLME+HG+ + G K+DR DG E Sbjct: 211 IHKVKVLKKPKFDVGKLMELHGEGSTTTSKGVTSEGGEKVDRVDGYE 257
>RS3A_CAEEL (P48154) 40S ribosomal protein S3a| Length = 256 Score = 44.7 bits (104), Expect = 6e-05 Identities = 23/42 (54%), Positives = 29/42 (69%), Gaps = 2/42 (4%) Frame = -3 Query: 369 YVRKVKILKAPKFDLGKLMEVHGD--YKEDVGVKLDRPDGDE 250 Y+RKVKI+K PK DLG+L ++HGD G K+DRPD E Sbjct: 208 YIRKVKIIKRPKVDLGRLHDLHGDSITVGADGEKVDRPDDYE 249
>RS3A_ANOGA (P52813) 40S ribosomal protein S3a (C3 protein)| Length = 268 Score = 43.1 bits (100), Expect = 2e-04 Identities = 17/24 (70%), Positives = 21/24 (87%) Frame = -3 Query: 369 YVRKVKILKAPKFDLGKLMEVHGD 298 Y+RKVK+LK P+FDL LME+HGD Sbjct: 213 YIRKVKVLKKPRFDLSSLMELHGD 236
>RS3A_SCHPO (Q09781) 40S ribosomal protein S3aE-A (S1-A)| Length = 251 Score = 43.1 bits (100), Expect = 2e-04 Identities = 21/33 (63%), Positives = 27/33 (81%) Frame = -3 Query: 369 YVRKVKILKAPKFDLGKLMEVHGDYKEDVGVKL 271 +VRKVKILKAPK D KL+E+HG+ +DVG K+ Sbjct: 210 FVRKVKILKAPKHDAQKLLELHGE-SQDVGSKV 241
>RS3B_SCHPO (O94438) 40S ribosomal protein S3aE-B (S1-A)| Length = 251 Score = 42.7 bits (99), Expect = 2e-04 Identities = 21/32 (65%), Positives = 26/32 (81%) Frame = -3 Query: 366 VRKVKILKAPKFDLGKLMEVHGDYKEDVGVKL 271 VRKVKILKAPK D KL+E+HG+ +DVG K+ Sbjct: 211 VRKVKILKAPKHDAQKLLELHGE-SQDVGTKV 241
>RS3B_YEAST (P23248) 40S ribosomal protein S1-B (RP10B)| Length = 254 Score = 39.3 bits (90), Expect = 0.002 Identities = 16/24 (66%), Positives = 21/24 (87%) Frame = -3 Query: 369 YVRKVKILKAPKFDLGKLMEVHGD 298 +VRKVK+LK PKFD+G LM +HG+ Sbjct: 210 HVRKVKLLKQPKFDVGALMALHGE 233
>RS3A_YEAST (P33442) 40S ribosomal protein S1-A (RP10A)| Length = 254 Score = 39.3 bits (90), Expect = 0.002 Identities = 16/24 (66%), Positives = 21/24 (87%) Frame = -3 Query: 369 YVRKVKILKAPKFDLGKLMEVHGD 298 +VRKVK+LK PKFD+G LM +HG+ Sbjct: 210 HVRKVKLLKQPKFDVGALMALHGE 233
>RS3A_CANAL (P40910) 40S ribosomal protein S3aE (S1)| Length = 255 Score = 37.7 bits (86), Expect = 0.007 Identities = 19/43 (44%), Positives = 28/43 (65%), Gaps = 1/43 (2%) Frame = -3 Query: 369 YVRKVKILKAPKFDLGKLMEVHGD-YKEDVGVKLDRPDGDEVI 244 ++RKVK+LK PKFD G L+ +HG+ E+ G K+ D V+ Sbjct: 210 HIRKVKLLKQPKFDWGSLLALHGEGSTEEKGKKVSSGFKDVVL 252
>YR297_MIMIV (Q5UPY3) Hypothetical protein R297| Length = 168 Score = 28.5 bits (62), Expect = 4.1 Identities = 10/36 (27%), Positives = 22/36 (61%) Frame = +3 Query: 99 QKYSRNQPSKLTTKFTTPRWHIYHLLDKKQQNSDFY 206 ++Y+ NQP++L T+ P ++ + + + N +FY Sbjct: 80 KQYNYNQPNRLQTRSVRPNYYSGYRYNNRTGNQEFY 115
>S12A1_RABIT (P55015) Solute carrier family 12 member 1 (Bumetanide-sensitive| sodium-(potassium)-chloride cotransporter 2) (Kidney-specific Na-K-Cl symporter) Length = 1099 Score = 27.7 bits (60), Expect = 7.1 Identities = 17/60 (28%), Positives = 26/60 (43%), Gaps = 3/60 (5%) Frame = -3 Query: 369 YVRKVKILKAPKFDLGKLMEVHGDYKEDVGV---KLDRPDGDEVIPGAEEVAAAE*KNRS 199 Y R + PK + L+E+H ++V V DR E +PG E E N++ Sbjct: 113 YYRNTGSVSGPKVNRPSLLEIHEQLAKNVAVTPGSADRVANGEGMPGEEHAENKEEDNKA 172
>HATB_ARATH (Q9FJT8) Histone acetyltransferase type B catalytic subunit (EC| 2.3.1.48) (HAT B) Length = 467 Score = 27.7 bits (60), Expect = 7.1 Identities = 9/19 (47%), Positives = 13/19 (68%) Frame = +3 Query: 144 TTPRWHIYHLLDKKQQNSD 200 T P WH+Y L+ KK++ D Sbjct: 203 TDPDWHLYLLIQKKEEKED 221
>YK68_YEAST (P36164) Hypothetical 38.3 kDa protein in PRP16-SRP40 intergenic| region Length = 337 Score = 27.7 bits (60), Expect = 7.1 Identities = 16/59 (27%), Positives = 25/59 (42%) Frame = +3 Query: 33 HNLQPESNTNKTR*LNAG*ECRQKYSRNQPSKLTTKFTTPRWHIYHLLDKKQQNSDFYF 209 +++ P SN + NAG + + N L +PR + H + K Q FYF Sbjct: 29 NDIMPNSNNGQRVGTNAGLSFNDEVNVNDDDFLDIYNMSPRERLMHNIRKNVQKLQFYF 87
>Y241_MYCGE (P47483) Hypothetical protein MG241| Length = 620 Score = 27.7 bits (60), Expect = 7.1 Identities = 16/41 (39%), Positives = 24/41 (58%), Gaps = 3/41 (7%) Frame = +3 Query: 99 QKYSRNQPSKLTTKFTTPRWHIYHLLDKKQQ---NSDFYFS 212 +KYS NQP KL+ T +Y L K++Q +DF+F+ Sbjct: 322 EKYSTNQPQKLSLNST-----VYVLQTKQKQFFLKNDFFFN 357
>DPO1_BACSU (O34996) DNA polymerase I (EC 2.7.7.7) (POL I)| Length = 880 Score = 27.3 bits (59), Expect = 9.2 Identities = 22/61 (36%), Positives = 27/61 (44%), Gaps = 1/61 (1%) Frame = -3 Query: 333 FDLGKLMEVHGDYKEDVGVKLDR-PDGDEVIPGAEEVAAAE*KNRSRYFAASYLEDDICA 157 FD GK HG +KE G + P+ E +P E+ A SRY Y DDI Sbjct: 60 FDAGKTTFRHGTFKEYKGGRQKTPPELSEQMPFIRELLDA--YQISRYELEQYEADDIIG 117 Query: 156 T 154 T Sbjct: 118 T 118
>RECR_PHOPR (Q6LTE6) Recombination protein recR| Length = 202 Score = 27.3 bits (59), Expect = 9.2 Identities = 17/55 (30%), Positives = 27/55 (49%) Frame = -3 Query: 183 SYLEDDICATWVS*TL*SVLMADFLSTSVDIPSQRSTILFCSCYFLVGGYESPLN 19 ++ EDDICA + + + DI + ST F YF++ G+ SPL+ Sbjct: 62 TFTEDDICAVCANPRRQENGQICVVESPADIVAVESTGQFSGRYFVLMGHLSPLD 116 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 45,001,139 Number of Sequences: 219361 Number of extensions: 729190 Number of successful extensions: 1670 Number of sequences better than 10.0: 36 Number of HSP's better than 10.0 without gapping: 1642 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 1667 length of database: 80,573,946 effective HSP length: 100 effective length of database: 58,637,846 effective search space used: 1407308304 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
