ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbart59d11 |
|---|---|
| Clone Library Name | barley_pub |
>HERC2_HUMAN (O95714) HECT domain and RCC1-like domain-containing protein 2| Length = 4834 Score = 30.8 bits (68), Expect = 0.99 Identities = 10/14 (71%), Positives = 12/14 (85%) Frame = -1 Query: 154 RWGDRDAPPPGLAR 113 +WGD+D PPPGL R Sbjct: 1880 KWGDQDGPPPGLGR 1893
>HERC2_MOUSE (Q4U2R1) HECT domain and RCC1-like domain-containing protein 2| Length = 4836 Score = 30.8 bits (68), Expect = 0.99 Identities = 10/14 (71%), Positives = 12/14 (85%) Frame = -1 Query: 154 RWGDRDAPPPGLAR 113 +WGD+D PPPGL R Sbjct: 1881 KWGDQDGPPPGLGR 1894
>PER2_ORYSA (P37835) Peroxidase 2 precursor (EC 1.11.1.7)| Length = 314 Score = 30.4 bits (67), Expect = 1.3 Identities = 13/14 (92%), Positives = 13/14 (92%) Frame = -2 Query: 225 GTQGQIRLNCSLVN 184 GTQGQIRLNCS VN Sbjct: 301 GTQGQIRLNCSKVN 314
>PER33_ARATH (P24101) Peroxidase 33 precursor (EC 1.11.1.7) (Atperox P33)| (ATPCa) (Neutral peroxidase C) (PERC) Length = 354 Score = 29.6 bits (65), Expect = 2.2 Identities = 12/14 (85%), Positives = 13/14 (92%) Frame = -2 Query: 225 GTQGQIRLNCSLVN 184 GTQGQIRLNC +VN Sbjct: 323 GTQGQIRLNCRVVN 336
>PER34_ARATH (Q9SMU8) Peroxidase 34 precursor (EC 1.11.1.7) (Atperox P34)| (ATPCb) Length = 353 Score = 29.6 bits (65), Expect = 2.2 Identities = 12/14 (85%), Positives = 13/14 (92%) Frame = -2 Query: 225 GTQGQIRLNCSLVN 184 GTQGQIRLNC +VN Sbjct: 322 GTQGQIRLNCRVVN 335
>PER1A_ARMRU (P00433) Peroxidase C1A precursor (EC 1.11.1.7)| Length = 353 Score = 29.6 bits (65), Expect = 2.2 Identities = 12/14 (85%), Positives = 13/14 (92%) Frame = -2 Query: 225 GTQGQIRLNCSLVN 184 GTQGQIRLNC +VN Sbjct: 322 GTQGQIRLNCRVVN 335
>PER23_ARATH (O80912) Peroxidase 23 precursor (EC 1.11.1.7) (Atperox P23)| (ATP34) Length = 349 Score = 28.9 bits (63), Expect = 3.8 Identities = 11/15 (73%), Positives = 13/15 (86%) Frame = -2 Query: 225 GTQGQIRLNCSLVNP 181 GTQG+IR NC +VNP Sbjct: 320 GTQGEIRQNCRVVNP 334
>PER22_ARATH (P24102) Peroxidase 22 precursor (EC 1.11.1.7) (Atperox P22)| (ATPEa) (Basic peroxidase E) Length = 349 Score = 28.9 bits (63), Expect = 3.8 Identities = 11/15 (73%), Positives = 13/15 (86%) Frame = -2 Query: 225 GTQGQIRLNCSLVNP 181 GTQG+IR NC +VNP Sbjct: 320 GTQGEIRQNCRVVNP 334
>PER1_WHEAT (Q05855) Peroxidase precursor (EC 1.11.1.7) (WP2)| Length = 312 Score = 28.5 bits (62), Expect = 4.9 Identities = 12/14 (85%), Positives = 13/14 (92%) Frame = -2 Query: 225 GTQGQIRLNCSLVN 184 GTQGQIRL+CS VN Sbjct: 298 GTQGQIRLSCSKVN 311
>PER1_HORVU (P27337) Peroxidase 1 precursor (EC 1.11.1.7)| Length = 315 Score = 28.5 bits (62), Expect = 4.9 Identities = 12/14 (85%), Positives = 13/14 (92%) Frame = -2 Query: 225 GTQGQIRLNCSLVN 184 GTQGQIRL+CS VN Sbjct: 301 GTQGQIRLSCSRVN 314
>PER1B_ARMRU (P15232) Peroxidase C1B precursor (EC 1.11.1.7)| Length = 351 Score = 28.5 bits (62), Expect = 4.9 Identities = 11/14 (78%), Positives = 13/14 (92%) Frame = -2 Query: 225 GTQGQIRLNCSLVN 184 GTQG+IRLNC +VN Sbjct: 320 GTQGEIRLNCRVVN 333
>PER1C_ARMRU (P15233) Peroxidase C1C precursor (EC 1.11.1.7) (Fragment)| Length = 332 Score = 28.5 bits (62), Expect = 4.9 Identities = 11/14 (78%), Positives = 13/14 (92%) Frame = -2 Query: 225 GTQGQIRLNCSLVN 184 GTQG+IRLNC +VN Sbjct: 301 GTQGEIRLNCRVVN 314
>SHCBB_XENLA (Q640F2) SHC SH2 domain-binding protein 1 homolog B| Length = 698 Score = 28.1 bits (61), Expect = 6.4 Identities = 10/17 (58%), Positives = 13/17 (76%) Frame = -3 Query: 95 DVCVLECQCTGVRVSRC 45 D CVL+C+ TGV V +C Sbjct: 464 DNCVLQCETTGVTVKKC 480 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 28,365,066 Number of Sequences: 219361 Number of extensions: 432672 Number of successful extensions: 1211 Number of sequences better than 10.0: 13 Number of HSP's better than 10.0 without gapping: 1195 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 1211 length of database: 80,573,946 effective HSP length: 50 effective length of database: 69,605,896 effective search space used: 1670541504 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
