ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbart59d09
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1ref|XM_476984.1| Oryza sativa (japonica cultivar-group), mRNA 98 2e-17
2dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic D... 98 2e-17
3dbj|AP003848.3| Oryza sativa (japonica cultivar-group) genomic D... 98 2e-17
4dbj|AP004379.3| Oryza sativa (japonica cultivar-group) genomic D... 98 2e-17
5dbj|AK069901.1| Oryza sativa (japonica cultivar-group) cDNA clon... 98 2e-17
6gb|AY108888.1| Zea mays PCO079915 mRNA sequence 80 6e-12
7gb|AC166090.23| Glycine max clone gmw1-103e11, complete sequence 60 5e-06
8gb|BT014612.1| Lycopersicon esculentum clone 134095R, mRNA sequence 50 0.005
9gb|AC144516.5| Medicago truncatula clone mth2-28p22, complete se... 48 0.021
10ref|NM_121812.2| Arabidopsis thaliana DRT101 (DNA-DAMAGE-REPAIR/... 44 0.32
11gb|AY075620.1| Arabidopsis thaliana AT5g18070/MRG7_2 mRNA, compl... 44 0.32
12ref|NM_001015765.1| Xenopus tropicalis MGC108299 protein (MGC108... 44 0.32
13gb|AC018897.4|AC018897 Homo sapiens BAC clone RP11-575J11 from 1... 44 0.32
14emb|BX831277.1|CNS0A1ZE Arabidopsis thaliana Full-length cDNA Co... 44 0.32
15gb|BC089704.1| Xenopus tropicalis MGC108299 protein, mRNA (cDNA ... 44 0.32
16dbj|AB012246.1| Arabidopsis thaliana genomic DNA, chromosome 5, ... 44 0.32
17emb|CR761623.2| Xenopus tropicalis finished cDNA, clone TGas048m19 44 0.32
18dbj|AP002984.3| Homo sapiens genomic DNA, chromosome 11 clone:CT... 44 0.32
19gb|AC148461.2| Xenopus tropicalis clone CH216-3P14, complete seq... 44 0.32
20gb|L11367.1|ATHUNIDA Arabidopsis thaliana unidentified mRNA sequ... 44 0.32
21gb|BC084691.1| Danio rerio phosphoglucomutase 3, mRNA (cDNA clon... 42 1.3
22ref|NM_001007053.1| Danio rerio phosphoglucomutase 3 (pgm3), mRNA 42 1.3
23gb|AY596550.1| Saccharum officinarum clone SCCCRZ1001B01, comple... 42 1.3
24gb|AC008751.7| Homo sapiens chromosome 19 clone CTD-2623H2, comp... 42 1.3
25gb|AC124191.4| Mus musculus BAC clone RP23-275E4 from 18, comple... 42 1.3
26gb|AC147551.5| Mus musculus BAC clone RP23-77G5 from 18, complet... 42 1.3
27gb|CP000081.1| Leishmania major chromosome 35, complete sequence 40 5.0
28gb|AC133217.2| Oryza sativa (japonica cultivar-group) chromosome... 40 5.0
29gb|AC132919.9| Mus musculus chromosome 12, clone RP24-356H3, com... 40 5.0
30emb|CR388121.11| Zebrafish DNA sequence from clone DKEY-161F5 in... 40 5.0
31emb|AL450325.5| Human DNA sequence from clone RP11-17F15 on chro... 40 5.0
32emb|AL035465.4|HS197K23 Human DNA sequence from clone RP1-197K23... 40 5.0
33gb|AE008779.1| Salmonella typhimurium LT2, section 83 of 220 of ... 40 5.0
34emb|AL627271.1| Salmonella enterica serovar Typhi (Salmonella ty... 40 5.0
35gb|AC095351.5| Homo sapiens X BAC RP11-359C4 (Roswell Park Cance... 40 5.0
36dbj|AP007151.1| Aspergillus oryzae RIB40 genomic DNA, SC005 40 5.0
37gb|AC092671.2| Homo sapiens BAC clone RP11-598I5 from 4, complet... 40 5.0
38gb|AC020556.7| Homo sapiens BAC clone RP11-507B10 from 4, comple... 40 5.0
39emb|BX248108.11| Zebrafish DNA sequence from clone CH211-221P4, ... 40 5.0
40dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic D... 40 5.0
41gb|AC026433.4|AC026433 Homo sapiens chromosome 5 clone CTD-2239K... 40 5.0
42gb|AC096725.3| Homo sapiens BAC clone RP11-25L5 from 4, complete... 40 5.0
43gb|AC154281.2| Mus musculus BAC clone RP24-271P6 from chromosome... 40 5.0
44gb|CP000026.1| Salmonella enterica subsp. enterica serovar Parat... 40 5.0
45emb|BX784032.4| Zebrafish DNA sequence from clone CH211-87N12 in... 40 5.0
46gb|AC102304.6| Mus musculus chromosome 7, clone RP24-403P14, com... 40 5.0
47gb|AE014613.1| Salmonella enterica subsp. enterica serovar Typhi... 40 5.0
48gb|AE017220.1| Salmonella enterica subsp. enterica serovar Chole... 40 5.0
49emb|CT027564.7| Mouse DNA sequence from clone RP24-293N14 on chr... 40 5.0
50gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome... 40 5.0
51gb|AC125067.4| Mus musculus BAC clone RP23-431C5 from 12, comple... 40 5.0
52gb|AC172892.1| Mus musculus BAC clone RP23-269B2 from chromosome... 40 5.0
53emb|AL845449.4| Mouse DNA sequence from clone RP23-211M20 on chr... 40 5.0 
>ref|XM_476984.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1999

 Score = 97.6 bits (49), Expect = 2e-17
 Identities = 112/133 (84%)
 Strand = Plus / Minus

                                                                        
Query: 172  ccaagaatgcgctcaacatgctgtgctacagattttgcaaggctgtctgctgcttccacg 231
            ||||||||||||||||||||||| || ||   |||||||||||  || ||||||||| | 
Sbjct: 1753 ccaagaatgcgctcaacatgctgcgccactcgttttgcaaggcaatcagctgcttcctct 1694

                                                                        
Query: 232  gtagatgcctctgcatatactcttaccacatcctcagttccagatggtcgcacaaagcac 291
            | |||||||||||||||||| |  ||||||||||| || |||||||| ||||| || || 
Sbjct: 1693 gaagatgcctctgcatatacacgcaccacatcctcggtaccagatggccgcacgaaacat 1634

                         
Query: 292  cgcccgtgagagt 304
            ||||| |||||||
Sbjct: 1633 cgcccatgagagt 1621
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>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete
               sequence
          Length = 29644043

 Score = 97.6 bits (49), Expect = 2e-17
 Identities = 112/133 (84%)
 Strand = Plus / Plus

                                                                           
Query: 172     ccaagaatgcgctcaacatgctgtgctacagattttgcaaggctgtctgctgcttccacg 231
               ||||||||||||||||||||||| || ||   |||||||||||  || ||||||||| | 
Sbjct: 5211488 ccaagaatgcgctcaacatgctgcgccactcgttttgcaaggcaatcagctgcttcctct 5211547

                                                                           
Query: 232     gtagatgcctctgcatatactcttaccacatcctcagttccagatggtcgcacaaagcac 291
               | |||||||||||||||||| |  ||||||||||| || |||||||| ||||| || || 
Sbjct: 5211548 gaagatgcctctgcatatacacgcaccacatcctcggtaccagatggccgcacgaaacat 5211607

                            
Query: 292     cgcccgtgagagt 304
               ||||| |||||||
Sbjct: 5211608 cgcccatgagagt 5211620
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>dbj|AP003848.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC
             clone:OJ1715_A07
          Length = 130907

 Score = 97.6 bits (49), Expect = 2e-17
 Identities = 112/133 (84%)
 Strand = Plus / Plus

                                                                         
Query: 172   ccaagaatgcgctcaacatgctgtgctacagattttgcaaggctgtctgctgcttccacg 231
             ||||||||||||||||||||||| || ||   |||||||||||  || ||||||||| | 
Sbjct: 78202 ccaagaatgcgctcaacatgctgcgccactcgttttgcaaggcaatcagctgcttcctct 78261

                                                                         
Query: 232   gtagatgcctctgcatatactcttaccacatcctcagttccagatggtcgcacaaagcac 291
             | |||||||||||||||||| |  ||||||||||| || |||||||| ||||| || || 
Sbjct: 78262 gaagatgcctctgcatatacacgcaccacatcctcggtaccagatggccgcacgaaacat 78321

                          
Query: 292   cgcccgtgagagt 304
             ||||| |||||||
Sbjct: 78322 cgcccatgagagt 78334
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>dbj|AP004379.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC
             clone:P0589E08
          Length = 138416

 Score = 97.6 bits (49), Expect = 2e-17
 Identities = 112/133 (84%)
 Strand = Plus / Plus

                                                                         
Query: 172   ccaagaatgcgctcaacatgctgtgctacagattttgcaaggctgtctgctgcttccacg 231
             ||||||||||||||||||||||| || ||   |||||||||||  || ||||||||| | 
Sbjct: 10251 ccaagaatgcgctcaacatgctgcgccactcgttttgcaaggcaatcagctgcttcctct 10310

                                                                         
Query: 232   gtagatgcctctgcatatactcttaccacatcctcagttccagatggtcgcacaaagcac 291
             | |||||||||||||||||| |  ||||||||||| || |||||||| ||||| || || 
Sbjct: 10311 gaagatgcctctgcatatacacgcaccacatcctcggtaccagatggccgcacgaaacat 10370

                          
Query: 292   cgcccgtgagagt 304
             ||||| |||||||
Sbjct: 10371 cgcccatgagagt 10383
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>dbj|AK069901.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023034C14, full
            insert sequence
          Length = 1999

 Score = 97.6 bits (49), Expect = 2e-17
 Identities = 112/133 (84%)
 Strand = Plus / Minus

                                                                        
Query: 172  ccaagaatgcgctcaacatgctgtgctacagattttgcaaggctgtctgctgcttccacg 231
            ||||||||||||||||||||||| || ||   |||||||||||  || ||||||||| | 
Sbjct: 1753 ccaagaatgcgctcaacatgctgcgccactcgttttgcaaggcaatcagctgcttcctct 1694

                                                                        
Query: 232  gtagatgcctctgcatatactcttaccacatcctcagttccagatggtcgcacaaagcac 291
            | |||||||||||||||||| |  ||||||||||| || |||||||| ||||| || || 
Sbjct: 1693 gaagatgcctctgcatatacacgcaccacatcctcggtaccagatggccgcacgaaacat 1634

                         
Query: 292  cgcccgtgagagt 304
            ||||| |||||||
Sbjct: 1633 cgcccatgagagt 1621
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>gb|AY108888.1| Zea mays PCO079915 mRNA sequence
          Length = 450

 Score = 79.8 bits (40), Expect = 6e-12
 Identities = 106/128 (82%)
 Strand = Plus / Minus

                                                                       
Query: 232 gtagatgcctctgcatatactcttaccacatcctcagttccagatggtcgcacaaagcac 291
           |||||||||||||| || || | ||||||||| || || || ||||| ||||||||||| 
Sbjct: 212 gtagatgcctctgcgtacacccgtaccacatcttctgtaccggatggacgcacaaagcat 153

                                                                       
Query: 292 cgcccgtgagagtggttaacgacttccttatctatcaattcttgcaagccagatggttgg 351
           |||||||| | || |||  ||   ||||||||||||||||||||||| | ||| ||||||
Sbjct: 152 cgcccgtgggtgtagttggcggtctccttatctatcaattcttgcaaactagaaggttgg 93

                   
Query: 352 caaacttt 359
           | ||||||
Sbjct: 92  ctaacttt 85
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>gb|AC166090.23| Glycine max clone gmw1-103e11, complete sequence
          Length = 89397

 Score = 60.0 bits (30), Expect = 5e-06
 Identities = 54/62 (87%)
 Strand = Plus / Plus

                                                                         
Query: 232   gtagatgcctctgcatatactcttaccacatcctcagttccagatggtcgcacaaagcac 291
             ||||||||||| ||||| || |  || ||||| ||||| |||||||||||||||||||||
Sbjct: 37960 gtagatgcctcagcatacacacgaacaacatcttcagtgccagatggtcgcacaaagcac 38019

               
Query: 292   cg 293
             ||
Sbjct: 38020 cg 38021
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>gb|BT014612.1| Lycopersicon esculentum clone 134095R, mRNA sequence
          Length = 2594

 Score = 50.1 bits (25), Expect = 0.005
 Identities = 34/37 (91%)
 Strand = Plus / Minus

                                                 
Query: 244  gcatatactcttaccacatcctcagttccagatggtc 280
            |||||||||||||| ||||||||||| ||||| ||||
Sbjct: 2314 gcatatactcttacaacatcctcagtcccagaaggtc 2278
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>gb|AC144516.5| Medicago truncatula clone mth2-28p22, complete sequence
          Length = 111130

 Score = 48.1 bits (24), Expect = 0.021
 Identities = 30/32 (93%)
 Strand = Plus / Minus

                                              
Query: 259    acatcctcagttccagatggtcgcacaaagca 290
              |||||||||||||| |||||||| ||||||||
Sbjct: 109173 acatcctcagttcctgatggtcgaacaaagca 109142
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>ref|NM_121812.2| Arabidopsis thaliana DRT101 (DNA-DAMAGE-REPAIR/TOLERATION 101);
            intramolecular transferase, phosphotransferases AT5G18070
            (DRT101) mRNA, complete cds
          Length = 1928

 Score = 44.1 bits (22), Expect = 0.32
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                      
Query: 238  gcctctgcatatactcttaccacatc 263
            ||||||||||||||||| ||||||||
Sbjct: 1705 gcctctgcatatactctcaccacatc 1680
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>gb|AY075620.1| Arabidopsis thaliana AT5g18070/MRG7_2 mRNA, complete cds
          Length = 1928

 Score = 44.1 bits (22), Expect = 0.32
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                      
Query: 238  gcctctgcatatactcttaccacatc 263
            ||||||||||||||||| ||||||||
Sbjct: 1705 gcctctgcatatactctcaccacatc 1680
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>ref|NM_001015765.1| Xenopus tropicalis MGC108299 protein (MGC108299), mRNA
          Length = 3162

 Score = 44.1 bits (22), Expect = 0.32
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                      
Query: 24   tgtacagtacaataaaaaatcagcaa 49
            ||||||||||| ||||||||||||||
Sbjct: 2999 tgtacagtacattaaaaaatcagcaa 2974
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>gb|AC018897.4|AC018897 Homo sapiens BAC clone RP11-575J11 from 11, complete sequence
          Length = 164472

 Score = 44.1 bits (22), Expect = 0.32
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                 
Query: 125 gtttcagaaaaagatgaaagat 146
           ||||||||||||||||||||||
Sbjct: 444 gtttcagaaaaagatgaaagat 423
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>emb|BX831277.1|CNS0A1ZE Arabidopsis thaliana Full-length cDNA Complete sequence from clone
           GSLTLS74ZD05 of Adult vegetative tissue of strain col-0
           of Arabidopsis thaliana (thale cress)
          Length = 716

 Score = 44.1 bits (22), Expect = 0.32
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                     
Query: 238 gcctctgcatatactcttaccacatc 263
           ||||||||||||||||| ||||||||
Sbjct: 512 gcctctgcatatactctcaccacatc 487
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>gb|BC089704.1| Xenopus tropicalis MGC108299 protein, mRNA (cDNA clone MGC:108299
            IMAGE:7021484), complete cds
          Length = 3162

 Score = 44.1 bits (22), Expect = 0.32
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                      
Query: 24   tgtacagtacaataaaaaatcagcaa 49
            ||||||||||| ||||||||||||||
Sbjct: 2999 tgtacagtacattaaaaaatcagcaa 2974
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>dbj|AB012246.1| Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone:MRG7
          Length = 83948

 Score = 44.1 bits (22), Expect = 0.32
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                      
Query: 238  gcctctgcatatactcttaccacatc 263
            ||||||||||||||||| ||||||||
Sbjct: 6217 gcctctgcatatactctcaccacatc 6192
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>emb|CR761623.2| Xenopus tropicalis finished cDNA, clone TGas048m19
          Length = 1748

 Score = 44.1 bits (22), Expect = 0.32
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                      
Query: 24   tgtacagtacaataaaaaatcagcaa 49
            ||||||||||| ||||||||||||||
Sbjct: 1590 tgtacagtacattaaaaaatcagcaa 1565
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>dbj|AP002984.3| Homo sapiens genomic DNA, chromosome 11 clone:CTD-2198F5, complete
             sequence
          Length = 153042

 Score = 44.1 bits (22), Expect = 0.32
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                   
Query: 125   gtttcagaaaaagatgaaagat 146
             ||||||||||||||||||||||
Sbjct: 58039 gtttcagaaaaagatgaaagat 58018
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>gb|AC148461.2| Xenopus tropicalis clone CH216-3P14, complete sequence
          Length = 177929

 Score = 44.1 bits (22), Expect = 0.32
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                        
Query: 24     tgtacagtacaataaaaaatcagcaa 49
              ||||||||||| ||||||||||||||
Sbjct: 162907 tgtacagtacattaaaaaatcagcaa 162932
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>gb|L11367.1|ATHUNIDA Arabidopsis thaliana unidentified mRNA sequence, complete cds
          Length = 1254

 Score = 44.1 bits (22), Expect = 0.32
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                      
Query: 238  gcctctgcatatactcttaccacatc 263
            ||||||||||||||||| ||||||||
Sbjct: 1055 gcctctgcatatactctcaccacatc 1030
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>gb|BC084691.1| Danio rerio phosphoglucomutase 3, mRNA (cDNA clone MGC:91932
            IMAGE:7040649), complete cds
          Length = 2714

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                     
Query: 256  accacatcctcagttccagatggtc 280
            ||||||||||||||||| |||||||
Sbjct: 1571 accacatcctcagttcctgatggtc 1547
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>ref|NM_001007053.1| Danio rerio phosphoglucomutase 3 (pgm3), mRNA
          Length = 2714

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                     
Query: 256  accacatcctcagttccagatggtc 280
            ||||||||||||||||| |||||||
Sbjct: 1571 accacatcctcagttcctgatggtc 1547
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>gb|AY596550.1| Saccharum officinarum clone SCCCRZ1001B01, complete sequence
          Length = 2173

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 23   ttgtacagtacaataaaaaat 43
            |||||||||||||||||||||
Sbjct: 2070 ttgtacagtacaataaaaaat 2050
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>gb|AC008751.7| Homo sapiens chromosome 19 clone CTD-2623H2, complete sequence
          Length = 169089

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 65     atacatatatgtctacattct 85
              |||||||||||||||||||||
Sbjct: 111004 atacatatatgtctacattct 111024
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>gb|AC124191.4| Mus musculus BAC clone RP23-275E4 from 18, complete sequence
          Length = 203003

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                       
Query: 58     aaacaaaatacatatatgtctacat 82
              ||||||||||||| |||||||||||
Sbjct: 144746 aaacaaaatacatgtatgtctacat 144722
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>gb|AC147551.5| Mus musculus BAC clone RP23-77G5 from 18, complete sequence
          Length = 275269

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                      
Query: 58    aaacaaaatacatatatgtctacat 82
             ||||||||||||| |||||||||||
Sbjct: 22811 aaacaaaatacatgtatgtctacat 22787
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>gb|CP000081.1| Leishmania major chromosome 35, complete sequence
          Length = 2090491

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 142     aagataaaagaagaacgcaa 161
               ||||||||||||||||||||
Sbjct: 1860915 aagataaaagaagaacgcaa 1860896
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>gb|AC133217.2| Oryza sativa (japonica cultivar-group) chromosome 11 BAC clone
             OSJNBa0052H02, complete sequence
          Length = 159632

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 107   taaaattgaaaattacacgtttca 130
             ||||||| ||||||||||||||||
Sbjct: 14508 taaaattaaaaattacacgtttca 14531
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>gb|AC132919.9| Mus musculus chromosome 12, clone RP24-356H3, complete sequence
          Length = 163965

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 134   aaagatgaaagataaaagaa 153
             ||||||||||||||||||||
Sbjct: 96008 aaagatgaaagataaaagaa 96027
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>emb|CR388121.11| Zebrafish DNA sequence from clone DKEY-161F5 in linkage group 15,
             complete sequence
          Length = 179357

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 132   aaaaagatgaaagataaaagaaga 155
             ||||||||||||||||||| ||||
Sbjct: 65605 aaaaagatgaaagataaaacaaga 65628
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>emb|AL450325.5| Human DNA sequence from clone RP11-17F15 on chromosome 6 Contains the
             5' end of the TReP-132 gene for zinc finger transcription
             protein, complete sequence
          Length = 88119

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 130   agaaaaagatgaaagataaaagaa 153
             ||||||| ||||||||||||||||
Sbjct: 30257 agaaaaaaatgaaagataaaagaa 30280
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>emb|AL035465.4|HS197K23 Human DNA sequence from clone RP1-197K23 on chromosome 6q22.2-23.3
             Contains part of the PTPRK gene for protein tyrosine
             phosphatase receptor type K (R-PTP-KAPPA) and the 5' end
             of a novel gene, complete sequence
          Length = 48634

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 137   gatgaaagataaaagaagaa 156
             ||||||||||||||||||||
Sbjct: 13433 gatgaaagataaaagaagaa 13414
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>gb|AE008779.1| Salmonella typhimurium LT2, section 83 of 220 of the complete genome
          Length = 25184

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 350   ggcaaactttccgttctgca 369
             ||||||||||||||||||||
Sbjct: 13702 ggcaaactttccgttctgca 13721
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>emb|AL627271.1| Salmonella enterica serovar Typhi (Salmonella typhi) strain CT18,
              complete chromosome; segment 7/20
          Length = 233050

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 350    ggcaaactttccgttctgca 369
              ||||||||||||||||||||
Sbjct: 230506 ggcaaactttccgttctgca 230525
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>gb|AC095351.5| Homo sapiens X BAC RP11-359C4 (Roswell Park Cancer Institute Human BAC
              Library) complete sequence
          Length = 194296

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 63     aaatacatatatgtctacat 82
              ||||||||||||||||||||
Sbjct: 138843 aaatacatatatgtctacat 138824
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>dbj|AP007151.1| Aspergillus oryzae RIB40 genomic DNA, SC005
          Length = 4429080

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                       
Query: 250     actcttaccacatcctcagttcca 273
               |||||||||| |||||||||||||
Sbjct: 3102598 actcttaccatatcctcagttcca 3102575
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>gb|AC092671.2| Homo sapiens BAC clone RP11-598I5 from 4, complete sequence
          Length = 164229

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 63     aaatacatatatgtctacat 82
              ||||||||||||||||||||
Sbjct: 107767 aaatacatatatgtctacat 107786
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>gb|AC020556.7| Homo sapiens BAC clone RP11-507B10 from 4, complete sequence
          Length = 186092

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 130    agaaaaagatgaaagataaa 149
              ||||||||||||||||||||
Sbjct: 130517 agaaaaagatgaaagataaa 130498
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>emb|BX248108.11| Zebrafish DNA sequence from clone CH211-221P4, complete sequence
          Length = 230610

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 134    aaagatgaaagataaaagaa 153
              ||||||||||||||||||||
Sbjct: 229931 aaagatgaaagataaaagaa 229912
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>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete
               sequence
          Length = 28386948

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                       
Query: 107     taaaattgaaaattacacgtttca 130
               ||||||| ||||||||||||||||
Sbjct: 2734701 taaaattaaaaattacacgtttca 2734724
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>gb|AC026433.4|AC026433 Homo sapiens chromosome 5 clone CTD-2239K20, complete sequence
          Length = 96951

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 132   aaaaagatgaaagataaaag 151
             ||||||||||||||||||||
Sbjct: 59654 aaaaagatgaaagataaaag 59673
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>gb|AC096725.3| Homo sapiens BAC clone RP11-25L5 from 4, complete sequence
          Length = 182627

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 63     aaatacatatatgtctacat 82
              ||||||||||||||||||||
Sbjct: 129387 aaatacatatatgtctacat 129368
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>gb|AC154281.2| Mus musculus BAC clone RP24-271P6 from chromosome 13, complete sequence
          Length = 182797

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 313   acttccttatctatcaattc 332
             ||||||||||||||||||||
Sbjct: 80830 acttccttatctatcaattc 80849
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>gb|CP000026.1| Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC 9150
          Length = 4585229

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 350     ggcaaactttccgttctgca 369
               ||||||||||||||||||||
Sbjct: 1160221 ggcaaactttccgttctgca 1160202
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>emb|BX784032.4| Zebrafish DNA sequence from clone CH211-87N12 in linkage group 18,
              complete sequence
          Length = 112053

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 130    agaaaaagatgaaagataaaagaa 153
              |||||||||||||| |||||||||
Sbjct: 111377 agaaaaagatgaaatataaaagaa 111400
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>gb|AC102304.6| Mus musculus chromosome 7, clone RP24-403P14, complete sequence
          Length = 153206

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 63    aaatacatatatgtctacat 82
             ||||||||||||||||||||
Sbjct: 71179 aaatacatatatgtctacat 71198
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>gb|AE014613.1| Salmonella enterica subsp. enterica serovar Typhi Ty2, complete genome
          Length = 4791961

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 350     ggcaaactttccgttctgca 369
               ||||||||||||||||||||
Sbjct: 1177626 ggcaaactttccgttctgca 1177607
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>gb|AE017220.1| Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67,
               complete genome
          Length = 4755700

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 350     ggcaaactttccgttctgca 369
               ||||||||||||||||||||
Sbjct: 1894884 ggcaaactttccgttctgca 1894903
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>emb|CT027564.7| Mouse DNA sequence from clone RP24-293N14 on chromosome 16, complete
             sequence
          Length = 180784

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 67    acatatatgtctacattcttcaaa 90
             |||| |||||||||||||||||||
Sbjct: 23253 acatttatgtctacattcttcaaa 23276
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>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence
          Length = 28369397

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                       
Query: 107     taaaattgaaaattacacgtttca 130
               ||||||| ||||||||||||||||
Sbjct: 2743732 taaaattaaaaattacacgtttca 2743755
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>gb|AC125067.4| Mus musculus BAC clone RP23-431C5 from 12, complete sequence
          Length = 192938

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 134   aaagatgaaagataaaagaa 153
             ||||||||||||||||||||
Sbjct: 94485 aaagatgaaagataaaagaa 94504
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>gb|AC172892.1| Mus musculus BAC clone RP23-269B2 from chromosome 16, complete sequence
          Length = 206740

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 67    acatatatgtctacattcttcaaa 90
             |||| |||||||||||||||||||
Sbjct: 22936 acatttatgtctacattcttcaaa 22913
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>emb|AL845449.4| Mouse DNA sequence from clone RP23-211M20 on chromosome 2, complete
              sequence
          Length = 226324

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 132    aaaaagatgaaagataaaagaaga 155
              |||||||| |||||||||||||||
Sbjct: 204712 aaaaagattaaagataaaagaaga 204689


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 4,465,391
Number of Sequences: 3902068
Number of extensions: 4465391
Number of successful extensions: 100868
Number of sequences better than 10.0: 53
Number of HSP's better than 10.0 without gapping: 53
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 100586
Number of HSP's gapped (non-prelim): 282
length of query: 377
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 355
effective length of database: 17,147,199,772
effective search space: 6087255919060
effective search space used: 6087255919060
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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