ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbart59d07
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1PIP13_ORYSA (Q9SXF8) Aquaporin PIP 1.3 (Plasma membrane intrinsi... 32 0.54
2PIP11_VICFA (P61838) Aquaporin PIP1.1 (Plasma membrane intrinsic... 29 2.7
3PIP11_ARATH (P61837) Aquaporin PIP1.1 (Plasma membrane intrinsic... 29 2.7
4PIP12_ARATH (Q06611) Aquaporin PIP1.2 (Plasma membrane intrinsic... 29 3.5

>PIP13_ORYSA (Q9SXF8) Aquaporin PIP 1.3 (Plasma membrane intrinsic protein 1.3)|
           (OsPIP1.3) (Water channel protein RWC3) (RWC-3)
          Length = 288

 Score = 31.6 bits (70), Expect = 0.54
 Identities = 14/14 (100%), Positives = 14/14 (100%)
 Frame = -1

Query: 288 HVVVIRAIPFKSRD 247
           HVVVIRAIPFKSRD
Sbjct: 275 HVVVIRAIPFKSRD 288



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>PIP11_VICFA (P61838) Aquaporin PIP1.1 (Plasma membrane intrinsic protein 1a)|
           (PIP1a) (Aquaporin 1) (Plasma membrane aquaporin 1)
          Length = 286

 Score = 29.3 bits (64), Expect = 2.7
 Identities = 13/13 (100%), Positives = 13/13 (100%)
 Frame = -1

Query: 288 HVVVIRAIPFKSR 250
           HVVVIRAIPFKSR
Sbjct: 273 HVVVIRAIPFKSR 285



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>PIP11_ARATH (P61837) Aquaporin PIP1.1 (Plasma membrane intrinsic protein 1a)|
           (PIP1a) (Aquaporin 1) (Plasma membrane aquaporin 1)
          Length = 286

 Score = 29.3 bits (64), Expect = 2.7
 Identities = 13/13 (100%), Positives = 13/13 (100%)
 Frame = -1

Query: 288 HVVVIRAIPFKSR 250
           HVVVIRAIPFKSR
Sbjct: 273 HVVVIRAIPFKSR 285



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>PIP12_ARATH (Q06611) Aquaporin PIP1.2 (Plasma membrane intrinsic protein 1b)|
           (PIP1b) (Transmembrane protein A) (TMP-A) (AthH2)
          Length = 286

 Score = 28.9 bits (63), Expect = 3.5
 Identities = 12/13 (92%), Positives = 13/13 (100%)
 Frame = -1

Query: 288 HVVVIRAIPFKSR 250
           HV+VIRAIPFKSR
Sbjct: 273 HVIVIRAIPFKSR 285


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 44,069,013
Number of Sequences: 219361
Number of extensions: 788881
Number of successful extensions: 1926
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1888
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1926
length of database: 80,573,946
effective HSP length: 71
effective length of database: 64,999,315
effective search space used: 1559983560
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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