No.
Definition
Score (bits)
E Value
1 ref|XM_474449.1| Oryza sativa (japonica cultivar-group), predic...
90
6e-15
2 dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic D...
90
6e-15
3 dbj|AK067667.1| Oryza sativa (japonica cultivar-group) cDNA clon...
90
6e-15
4 tpe|BN000591.1| TPA: TPA_inf: Oryza sativa (japonica cultivar-gr...
90
6e-15
5 emb|AL606637.3|OSJN00076 Oryza sativa genomic DNA, chromosome 4,...
90
6e-15
6 ref|XM_474454.1| Oryza sativa (japonica cultivar-group), predic...
80
6e-12
7 emb|AJ245900.1|OSA245900 Oryza sativa chromosome 4 BAC q3037-207...
80
6e-12
8 dbj|AK073360.1| Oryza sativa (japonica cultivar-group) cDNA clon...
80
6e-12
9 tpe|BN000593.1| TPA: TPA_inf: Oryza sativa (japonica cultivar-gr...
80
6e-12
10 emb|AL732348.2| Oryza sativa genomic DNA, chromosome 4, BAC clon...
80
6e-12
11 ref|XM_474450.1| Oryza sativa (japonica cultivar-group), predic...
72
1e-09
12 tpe|BN000592.1| TPA: TPA_inf: Oryza sativa (japonica cultivar-gr...
72
1e-09
13 dbj|AK070680.1| Oryza sativa (japonica cultivar-group) cDNA clon...
64
3e-07
14 emb|AL731628.4|OSJN00282 Oryza sativa genomic DNA, chromosome 4,...
52
0.001
15 dbj|AK108989.1| Oryza sativa (japonica cultivar-group) cDNA clon...
52
0.001
16 tpe|BN000583.1| TPA: TPA_inf: Oryza sativa (japonica cultivar-gr...
52
0.001
17 emb|AL731590.4|OSJN00233 Oryza sativa genomic DNA, chromosome 4,...
52
0.001
18 gb|AY857763.1| Triticum monococcum peroxidase 9 (POX9) mRNA, par...
48
0.021
19 gb|AY110228.1| Zea mays CL32412_1 mRNA sequence
48
0.021
20 gb|DQ376124.1| Eucalyptus globulus subsp. globulus peroxidase (P...
44
0.32
21 gb|CP000285.1| Chromohalobacter salexigens DSM 3043, complete ge...
42
1.3
22 ref|XM_754706.1| Ustilago maydis 521 hypothetical protein (UM036...
42
1.3
23 gb|AF397297.1|AF397297 Arthrobacter sp. AD2 halohydrin dehalogen...
42
1.3
24 dbj|AB178018.1| Ralstonia solanacearum hpx24 gene for hypothetic...
42
1.3
25 dbj|D90349.1|CORHHEA Corynebacterium sp. N-1074 hheA gene for ha...
42
1.3
26 gb|AE016827.1| Mannheimia succiniciproducens MBEL55E, complete g...
40
5.0
27 gb|AY857764.1| Triticum monococcum peroxidase 10 (POX10) mRNA, p...
40
5.0
28 ref|XM_501984.1| Yarrowia lipolytica CLIB122, YALI0C18645g predi...
40
5.0
29 gb|CP000090.1| Ralstonia eutropha JMP134 chromosome 1, complete ...
40
5.0
30 emb|AJ632270.1| Actinoplanes teichomyceticus teicoplanin gene cl...
40
5.0
31 emb|AJ538328.1|ECL538328 Enterobacter cloacae putative hemin upt...
40
5.0
32 gb|AE016818.1| Ashbya gossypii (= Eremothecium gossypii) ATCC 10...
40
5.0
33 gb|AF340167.1|AF340167 Streptomyces verticillus polyketide synth...
40
5.0
34 gb|AE005086.1| Halobacterium sp. NRC-1 section 117 of 170 of the...
40
5.0
35 emb|AJ438168.1|HSA438168 Halobacterium salinarum basB gene for a...
40
5.0
36 ref|NM_210013.1| Eremothecium gossypii AEL201Wp (AEL201W), mRNA
40
5.0
37 gb|AE016958.1| Mycobacterium avium subsp. paratuberculosis str. ...
40
5.0
38 emb|CR382129.1| Yarrowia lipolytica chromosome C of strain CLIB1...
40
5.0
39 gb|U11701.1|HSU11701 Human LIM-homeobox domain protein (hLH-2) m...
40
5.0
>dbj|AP008210.1 | Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete
sequence
Length = 35498469
Score = 89.7 bits (45), Expect = 6e-15
Identities = 126/153 (82%)
Strand = Plus / Plus
Query: 225 gaagcagctgcgacggatctcaccgacgttgccgccgggccggggcgcggtggcgagctt 284
|||||||||||| |||||||| |||||||| |||||||||| ||| | || ||||||
Sbjct: 35250654 gaagcagctgcggcggatctcgccgacgttcccgccgggcctgggtaccttgctgagctt 35250713
Query: 285 ggccatggatttggcgaactgcgcgaagaaggcgtccttgctgcgcgcgaactgccccac 344
| ||||||| ||||| ||||| ||||||||||| ||||| |||||||||||| ||
Sbjct: 35250714 gaccatggacttggcaaactggtcgaagaaggcggccttgtcctgcgcgaactgcctgac 35250773
Query: 345 gatgggcgccgtggtgcggtccttgatgagcgc 377
||||| ||||||||| ||| ||| ||||||||
Sbjct: 35250774 gatggacgccgtggtctggttcttcatgagcgc 35250806
Score = 79.8 bits (40), Expect = 6e-12
Identities = 81/92 (88%), Gaps = 2/92 (2%)
Strand = Plus / Plus
Query: 287 ccatggatttggcgaactgcgcgaagaaggcgtccttgctgcgcg-cgaactgccccacg 345
||||||| ||||||||||||| |||||||||| ||||| | || | ||||||||| |||
Sbjct: 35280836 ccatggacttggcgaactgcgtgaagaaggcggccttg-tccgtggcgaactgcctgacg 35280894
Query: 346 atgggcgccgtggtgcggtccttgatgagcgc 377
|||||||||||| | |||||||||||||||||
Sbjct: 35280895 atgggcgccgtgatccggtccttgatgagcgc 35280926
Score = 71.9 bits (36), Expect = 1e-09
Identities = 86/100 (86%), Gaps = 2/100 (2%)
Strand = Plus / Plus
Query: 279 gagcttggccatggatttggcgaactgcgcgaagaaggcgtccttgctgcgcg-cgaact 337
||||||| ||||||| |||||||||||| |||||| ||| ||||| | |||| ||||||
Sbjct: 35258114 gagcttgaccatggacttggcgaactgcctgaagaatgcggccttg-tccgcggcgaact 35258172
Query: 338 gccccacgatgggcgccgtggtgcggtccttgatgagcgc 377
||| ||||| ||||||||| | |||||||||||||||||
Sbjct: 35258173 gcctgacgattggcgccgtgatccggtccttgatgagcgc 35258212
Score = 52.0 bits (26), Expect = 0.001
Identities = 32/34 (94%)
Strand = Plus / Minus
Query: 282 cttggccatggatttggcgaactgcgcgaagaag 315
|||| ||||||| |||||||||||||||||||||
Sbjct: 20964324 cttgaccatggacttggcgaactgcgcgaagaag 20964291
Score = 48.1 bits (24), Expect = 0.021
Identities = 30/32 (93%)
Strand = Plus / Plus
Query: 223 ctgaagcagctgcgacggatctcaccgacgtt 254
|||||||||||||| |||||||| ||||||||
Sbjct: 35280772 ctgaagcagctgcggcggatctcgccgacgtt 35280803
Score = 48.1 bits (24), Expect = 0.021
Identities = 30/32 (93%)
Strand = Plus / Plus
Query: 223 ctgaagcagctgcgacggatctcaccgacgtt 254
|||||||||||||| |||||||| ||||||||
Sbjct: 35258058 ctgaagcagctgcggcggatctcgccgacgtt 35258089
>emb|AL606637.3 |OSJN00076 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0039K24,
complete sequence
Length = 173770
Score = 89.7 bits (45), Expect = 6e-15
Identities = 126/153 (82%)
Strand = Plus / Plus
Query: 225 gaagcagctgcgacggatctcaccgacgttgccgccgggccggggcgcggtggcgagctt 284
|||||||||||| |||||||| |||||||| |||||||||| ||| | || ||||||
Sbjct: 46499 gaagcagctgcggcggatctcgccgacgttcccgccgggcctgggtaccttgctgagctt 46558
Query: 285 ggccatggatttggcgaactgcgcgaagaaggcgtccttgctgcgcgcgaactgccccac 344
| ||||||| ||||| ||||| ||||||||||| ||||| |||||||||||| ||
Sbjct: 46559 gaccatggacttggcaaactggtcgaagaaggcggccttgtcctgcgcgaactgcctgac 46618
Query: 345 gatgggcgccgtggtgcggtccttgatgagcgc 377
||||| ||||||||| ||| ||| ||||||||
Sbjct: 46619 gatggacgccgtggtctggttcttcatgagcgc 46651
Score = 79.8 bits (40), Expect = 6e-12
Identities = 81/92 (88%), Gaps = 2/92 (2%)
Strand = Plus / Plus
Query: 287 ccatggatttggcgaactgcgcgaagaaggcgtccttgctgcgcg-cgaactgccccacg 345
||||||| ||||||||||||| |||||||||| ||||| | || | ||||||||| |||
Sbjct: 76681 ccatggacttggcgaactgcgtgaagaaggcggccttg-tccgtggcgaactgcctgacg 76739
Query: 346 atgggcgccgtggtgcggtccttgatgagcgc 377
|||||||||||| | |||||||||||||||||
Sbjct: 76740 atgggcgccgtgatccggtccttgatgagcgc 76771
Score = 71.9 bits (36), Expect = 1e-09
Identities = 86/100 (86%), Gaps = 2/100 (2%)
Strand = Plus / Plus
Query: 279 gagcttggccatggatttggcgaactgcgcgaagaaggcgtccttgctgcgcg-cgaact 337
||||||| ||||||| |||||||||||| |||||| ||| ||||| | |||| ||||||
Sbjct: 53959 gagcttgaccatggacttggcgaactgcctgaagaatgcggccttg-tccgcggcgaact 54017
Query: 338 gccccacgatgggcgccgtggtgcggtccttgatgagcgc 377
||| ||||| ||||||||| | |||||||||||||||||
Sbjct: 54018 gcctgacgattggcgccgtgatccggtccttgatgagcgc 54057
Score = 48.1 bits (24), Expect = 0.021
Identities = 30/32 (93%)
Strand = Plus / Plus
Query: 223 ctgaagcagctgcgacggatctcaccgacgtt 254
|||||||||||||| |||||||| ||||||||
Sbjct: 76617 ctgaagcagctgcggcggatctcgccgacgtt 76648
Score = 48.1 bits (24), Expect = 0.021
Identities = 30/32 (93%)
Strand = Plus / Plus
Query: 223 ctgaagcagctgcgacggatctcaccgacgtt 254
|||||||||||||| |||||||| ||||||||
Sbjct: 53903 ctgaagcagctgcggcggatctcgccgacgtt 53934
>emb|AJ245900.1 |OSA245900 Oryza sativa chromosome 4 BAC q3037-207F1 complete genome
Length = 124321
Score = 79.8 bits (40), Expect = 6e-12
Identities = 87/100 (87%), Gaps = 2/100 (2%)
Strand = Plus / Minus
Query: 279 gagcttggccatggatttggcgaactgcgcgaagaaggcgtccttgctgcgcg-cgaact 337
||||||| ||||||| ||||||||||||| |||||| ||| ||||| | |||| ||||||
Sbjct: 75713 gagcttgaccatggacttggcgaactgcgtgaagaatgcggccttg-tccgcggcgaact 75655
Query: 338 gccccacgatgggcgccgtggtgcggtccttgatgagcgc 377
||| ||||| ||||||||| | |||||||||||||||||
Sbjct: 75654 gcctgacgattggcgccgtgatccggtccttgatgagcgc 75615
Score = 79.8 bits (40), Expect = 6e-12
Identities = 81/92 (88%), Gaps = 2/92 (2%)
Strand = Plus / Minus
Query: 287 ccatggatttggcgaactgcgcgaagaaggcgtccttgctgcgcg-cgaactgccccacg 345
||||||| ||||||||||||| |||||||||| ||||| | || | ||||||||| |||
Sbjct: 72398 ccatggacttggcgaactgcgtgaagaaggcggccttg-tccgtggcgaactgcctgacg 72340
Query: 346 atgggcgccgtggtgcggtccttgatgagcgc 377
|||||||||||| | |||||||||||||||||
Sbjct: 72339 atgggcgccgtgatccggtccttgatgagcgc 72308
Score = 48.1 bits (24), Expect = 0.021
Identities = 30/32 (93%)
Strand = Plus / Minus
Query: 223 ctgaagcagctgcgacggatctcaccgacgtt 254
|||||||||||||| |||||||| ||||||||
Sbjct: 75769 ctgaagcagctgcggcggatctcgccgacgtt 75738
Score = 48.1 bits (24), Expect = 0.021
Identities = 30/32 (93%)
Strand = Plus / Minus
Query: 223 ctgaagcagctgcgacggatctcaccgacgtt 254
|||||||||||||| |||||||| ||||||||
Sbjct: 72462 ctgaagcagctgcggcggatctcgccgacgtt 72431
>emb|AL732348.2 | Oryza sativa genomic DNA, chromosome 4, BAC clone: H0701F11, complete
sequence
Length = 82895
Score = 79.8 bits (40), Expect = 6e-12
Identities = 87/100 (87%), Gaps = 2/100 (2%)
Strand = Plus / Plus
Query: 279 gagcttggccatggatttggcgaactgcgcgaagaaggcgtccttgctgcgcg-cgaact 337
||||||| ||||||| ||||||||||||| |||||| ||| ||||| | |||| ||||||
Sbjct: 81334 gagcttgaccatggacttggcgaactgcgtgaagaatgcggccttg-tccgcggcgaact 81392
Query: 338 gccccacgatgggcgccgtggtgcggtccttgatgagcgc 377
||| ||||| ||||||||| | |||||||||||||||||
Sbjct: 81393 gcctgacgattggcgccgtgatccggtccttgatgagcgc 81432
Score = 48.1 bits (24), Expect = 0.021
Identities = 30/32 (93%)
Strand = Plus / Plus
Query: 223 ctgaagcagctgcgacggatctcaccgacgtt 254
|||||||||||||| |||||||| ||||||||
Sbjct: 81278 ctgaagcagctgcggcggatctcgccgacgtt 81309
>gb|U11701.1 |HSU11701 Human LIM-homeobox domain protein (hLH-2) mRNA, complete cds
Length = 1887
Score = 40.1 bits (20), Expect = 5.0
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 261 gggccggggcgcggtggcga 280
||||||||||||||||||||
Sbjct: 377 gggccggggcgcggtggcga 396
Database: nt
Posted date: May 29, 2006 11:10 AM
Number of letters in database: 3,984,495,279
Number of sequences in database: 917,343
Database: /shigen/export/home/twatanab/db/nt/nt.01
Posted date: May 29, 2006 11:16 AM
Number of letters in database: 3,988,174,986
Number of sequences in database: 835,257
Database: /shigen/export/home/twatanab/db/nt/nt.02
Posted date: May 29, 2006 11:21 AM
Number of letters in database: 3,991,246,324
Number of sequences in database: 771,481
Database: /shigen/export/home/twatanab/db/nt/nt.03
Posted date: May 29, 2006 11:27 AM
Number of letters in database: 3,990,718,311
Number of sequences in database: 977,174
Database: /shigen/export/home/twatanab/db/nt/nt.04
Posted date: May 29, 2006 11:29 AM
Number of letters in database: 1,278,410,368
Number of sequences in database: 400,813
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2,333,848
Number of Sequences: 3902068
Number of extensions: 2333848
Number of successful extensions: 48176
Number of sequences better than 10.0: 40
Number of HSP's better than 10.0 without gapping: 41
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 47748
Number of HSP's gapped (non-prelim): 411
length of query: 377
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 355
effective length of database: 17,147,199,772
effective search space: 6087255919060
effective search space used: 6087255919060
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)