ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbart59d05 |
|---|---|
| Clone Library Name | barley_pub |
>SLIT3_MOUSE (Q9WVB4) Slit homolog 3 protein precursor (Slit-3) (Slit3)| Length = 1523 Score = 32.3 bits (72), Expect = 0.29 Identities = 16/48 (33%), Positives = 26/48 (54%), Gaps = 2/48 (4%) Frame = -3 Query: 184 EALRPVVQLRHDYAGCATSSRG--RRCIPWCATCCTQRLKFKRLTNIF 47 E +R ++ + DYA CAT+S+ C C + C Q ++ KR +F Sbjct: 1452 EIVREAIRRQKDYASCATASKVPIMECRGGCGSQCCQPIRSKRRKYVF 1499
>PLS2_MOUSE (Q9DCW2) Phospholipid scramblase 2 (PL scramblase 2)| (Ca(2+)-dependent phospholipid scramblase 2) Length = 307 Score = 32.3 bits (72), Expect = 0.29 Identities = 20/61 (32%), Positives = 26/61 (42%), Gaps = 2/61 (3%) Frame = -3 Query: 241 MIYLLFLDAPMVRRPCN*CEALRPVVQLRHDYAG--CATSSRGRRCIPWCATCCTQRLKF 68 M+Y+ D R C CEA RP D+ G T R RC C CC Q ++ Sbjct: 136 MVYVAVEDTDCCTRNC--CEASRPFTLRILDHLGQEVMTLERPLRCSSCCFPCCLQEIEI 193 Query: 67 K 65 + Sbjct: 194 Q 194
>SLIT3_RAT (O88280) Slit homolog 3 protein precursor (Slit-3) (Multiple| epidermal growth factor-like domains 5) Length = 1523 Score = 31.2 bits (69), Expect = 0.64 Identities = 16/48 (33%), Positives = 26/48 (54%), Gaps = 2/48 (4%) Frame = -3 Query: 184 EALRPVVQLRHDYAGCATSSRG--RRCIPWCATCCTQRLKFKRLTNIF 47 E +R ++ + DYA CAT+S+ C C + C Q ++ KR +F Sbjct: 1452 EIVREAIRRQKDYASCATASKVPIMVCRGGCGSQCCQPIRSKRRKYVF 1499
>RGS19_HUMAN (P49795) Regulator of G-protein signaling 19 (RGS19)| (G-alpha-interacting protein) (GAIP protein) Length = 217 Score = 30.0 bits (66), Expect = 1.4 Identities = 14/32 (43%), Positives = 15/32 (46%) Frame = -3 Query: 184 EALRPVVQLRHDYAGCATSSRGRRCIPWCATC 89 EA RP HD A A SR C+ WC C Sbjct: 16 EADRPPSMSSHDTASPAAPSRNPCCLCWCCCC 47
>CYB_CANST (Q6ED58) Cytochrome b| Length = 384 Score = 28.9 bits (63), Expect = 3.2 Identities = 19/68 (27%), Positives = 32/68 (47%) Frame = +1 Query: 118 VLCLMWHTLHNHGAAEPQGVTLHINCRDGVP*AHPRIINKSYNST*FGNLLDPIPPFLLV 297 + CL LH+HG+ P G+T +I D +P HP + K D + F + Sbjct: 193 ICCLHLLALHSHGSNNPLGITANI---DRIP-MHPFFLFK-----------DTVTIFAFL 237 Query: 298 YVVFCMLN 321 +V F +++ Sbjct: 238 FVYFFLIS 245
>CCPH_SHV21 (Q01016) Complement control protein homolog precursor (CCPH)| Length = 360 Score = 28.9 bits (63), Expect = 3.2 Identities = 17/55 (30%), Positives = 26/55 (47%), Gaps = 3/55 (5%) Frame = +1 Query: 49 ICLSNV*ILIAVCNKLHTMECIV---VLCLMWHTLHNHGAAEPQGVTLHINCRDG 204 ICL +L V + T+ C + + + L N+ P G TLH+ CR+G Sbjct: 7 ICL----VLSCVIYFVWTLSCPTRNQYVSVKYVNLTNYSGPYPNGTTLHVTCREG 57
>YRS4_CAEEL (Q09348) Hypothetical protein T05H10.4| Length = 436 Score = 28.9 bits (63), Expect = 3.2 Identities = 14/35 (40%), Positives = 19/35 (54%) Frame = +1 Query: 142 LHNHGAAEPQGVTLHINCRDGVP*AHPRIINKSYN 246 +HNHGA EP G G+P I+++SYN Sbjct: 223 VHNHGAVEPVG---QAGSHAGLPKTIREIVDRSYN 254
>TM16B_HUMAN (Q9NQ90) Transmembrane protein 16B| Length = 999 Score = 28.1 bits (61), Expect = 5.5 Identities = 22/60 (36%), Positives = 29/60 (48%), Gaps = 5/60 (8%) Frame = +2 Query: 5 MMFLY--CTIMQ*IEDKYVCQ---TFEF*SLCATSCTPWNASSSSA*CGTPCIIMAQLNH 169 ++FLY TI + I + +C F LC SC WN SS+ CGT AQ +H Sbjct: 379 IVFLYGCATIEEDIPSREMCDQQNAFTMCPLCDKSCDYWNLSSA---CGT-----AQASH 430
>RGS19_RAT (O70521) Regulator of G-protein signaling 19 (RGS19)| (G-alpha-interacting protein) (GAIP protein) Length = 216 Score = 28.1 bits (61), Expect = 5.5 Identities = 13/32 (40%), Positives = 14/32 (43%) Frame = -3 Query: 184 EALRPVVQLRHDYAGCATSSRGRRCIPWCATC 89 EA RP HD A SR C+ WC C Sbjct: 16 EADRPPSMSSHDAAPSGPPSRNPCCLCWCCCC 47
>RGS19_MOUSE (Q9CX84) Regulator of G-protein signaling 19 (RGS19)| Length = 216 Score = 28.1 bits (61), Expect = 5.5 Identities = 13/32 (40%), Positives = 14/32 (43%) Frame = -3 Query: 184 EALRPVVQLRHDYAGCATSSRGRRCIPWCATC 89 EA RP HD A SR C+ WC C Sbjct: 16 EADRPPSMSSHDAAPSGPPSRNPCCLCWCCCC 47
>WDR17_HUMAN (Q8IZU2) WD-repeat protein 17| Length = 1322 Score = 27.7 bits (60), Expect = 7.1 Identities = 17/52 (32%), Positives = 23/52 (44%), Gaps = 6/52 (11%) Frame = +2 Query: 80 LCATSCTPWN------ASSSSA*CGTPCIIMAQLNHRA*RFTSIAGTAYHRR 217 L A C PWN + A C T I + QL+HR F A + H++ Sbjct: 33 LLAAGCQPWNKDVCAASGDRFAYCATLAIYIYQLDHRYNEFKLHAIMSEHKK 84
>MOK12_SCHPO (Q9UUL4) Cell wall alpha-1,3-glucan synthase mok12 (EC 2.4.1.183)| Length = 2352 Score = 27.7 bits (60), Expect = 7.1 Identities = 12/38 (31%), Positives = 18/38 (47%) Frame = +2 Query: 104 WNASSSSA*CGTPCIIMAQLNHRA*RFTSIAGTAYHRR 217 WN S C +PC +A + +F ++ G YH R Sbjct: 2313 WNPSEGPGPCASPCFYIALIC----QFVAVGGLLYHYR 2346
>RRP45_YEAST (Q05636) Exosome complex exonuclease RRP45 (EC 3.1.13.-) (Ribosomal| RNA-processing protein 45) Length = 305 Score = 27.3 bits (59), Expect = 9.3 Identities = 10/27 (37%), Positives = 15/27 (55%) Frame = -1 Query: 162 SCAMIMQGVPHQAEDDDAFHGVQLVAH 82 SC +M G+ H + D HG Q++ H Sbjct: 151 SCIAVMAGLMHFKKPDITVHGEQIIVH 177
>JHD1_ASPFU (Q4WHB7) JmjC domain-containing histone demethylation protein 1 (EC| 1.14.11.-) Length = 1418 Score = 27.3 bits (59), Expect = 9.3 Identities = 13/46 (28%), Positives = 23/46 (50%), Gaps = 3/46 (6%) Frame = +1 Query: 154 GAAEPQGVTLHINCRDGVP*AHPR---IINKSYNST*FGNLLDPIP 282 G EP + H+N RD +P P ++ ++ + F LL+ +P Sbjct: 463 GMTEPIVIPAHLNTRDSIPIVDPEFDSLVQEATSQEMFDELLEHLP 508 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 57,102,593 Number of Sequences: 219361 Number of extensions: 1164545 Number of successful extensions: 2029 Number of sequences better than 10.0: 14 Number of HSP's better than 10.0 without gapping: 2007 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 2029 length of database: 80,573,946 effective HSP length: 98 effective length of database: 59,076,568 effective search space used: 1417837632 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
